Wall clock time and date at job start Mon Mar 30 2020 01:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46754 * 2 1 4 4 C 1.37100 * 120.00009 * 264.76884 * 3 2 1 5 5 H 1.07998 * 119.99966 * 138.85570 * 4 3 2 6 6 C 1.38950 * 120.00018 * 318.85813 * 4 3 2 7 7 N 1.31413 * 119.99860 * 341.83197 * 6 4 3 8 8 Si 1.86799 * 120.00354 * 161.83535 * 6 4 3 9 9 H 1.48497 * 109.47209 * 59.99110 * 8 6 4 10 10 H 1.48494 * 109.47415 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46681 * 299.99835 * 8 6 4 12 12 C 1.34780 * 119.99956 * 84.77399 * 3 2 1 13 13 O 1.21293 * 119.99640 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00141 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47420 * 180.02562 * 14 12 3 16 16 H 1.09004 * 109.46864 * 305.00452 * 15 14 12 17 17 C 1.52995 * 109.46893 * 64.99804 * 15 14 12 18 18 C 1.53005 * 109.47191 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46752 * 299.99959 * 18 17 15 20 20 C 1.53006 * 109.46898 * 60.00204 * 19 18 17 21 21 H 1.09000 * 109.46776 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47417 * 59.99870 * 20 19 18 23 23 C 1.42903 * 114.00131 * 89.99794 * 22 20 19 24 24 C 1.52995 * 109.47349 * 185.00098 * 15 14 12 25 25 H 1.09006 * 109.47345 * 300.00040 * 1 2 3 26 26 H 1.09000 * 109.47506 * 59.99826 * 1 2 3 27 27 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46476 * 240.00125 * 2 1 3 29 29 H 1.08999 * 109.46843 * 119.99824 * 2 1 3 30 30 H 0.96999 * 120.00015 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46794 * 59.99924 * 14 12 3 32 32 H 1.08998 * 109.47110 * 300.00593 * 14 12 3 33 33 H 1.09002 * 109.47613 * 299.99995 * 17 15 14 34 34 H 1.08997 * 109.47474 * 60.00457 * 17 15 14 35 35 H 1.08991 * 109.47416 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.46875 * 59.99677 * 18 17 15 37 37 H 1.08996 * 109.47384 * 300.00030 * 19 18 17 38 38 H 1.09006 * 109.47011 * 179.97438 * 19 18 17 39 39 H 1.08994 * 109.46680 * 60.00106 * 23 22 20 40 40 H 1.09000 * 109.46619 * 179.97438 * 23 22 20 41 41 H 1.08994 * 109.47051 * 300.00152 * 23 22 20 42 42 H 1.08996 * 109.47150 * 300.00021 * 24 15 14 43 43 H 1.09001 * 109.47058 * 59.99773 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0742 3.0218 -1.3535 6 6 3.0370 1.2842 -2.1606 7 7 3.6789 0.1818 -1.8452 8 14 3.0500 1.9006 -3.9239 9 1 3.6535 3.2566 -3.9699 10 1 3.8490 0.9747 -4.7661 11 1 1.6579 1.9608 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5473 3.1954 1.1624 14 6 1.7789 1.3815 2.4620 15 6 2.0099 2.3543 3.6200 16 1 3.0375 2.7167 3.5906 17 6 1.0481 3.5372 3.4918 18 6 1.2795 4.5104 4.6496 19 6 1.0302 3.7920 5.9772 20 6 1.9921 2.6090 6.1054 21 1 1.8149 2.0975 7.0514 22 8 3.3393 3.0841 6.0664 23 6 3.8779 3.4104 7.3491 24 6 1.7604 1.6356 4.9474 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1597 -0.3118 -2.5280 31 1 2.4004 0.4968 2.6007 32 1 0.7294 1.0881 2.4381 33 1 1.2259 4.0493 2.5462 34 1 0.0205 3.1749 3.5212 35 1 0.5940 5.3529 4.5586 36 1 2.3071 4.8727 4.6198 37 1 0.0027 3.4297 6.0070 38 1 1.1955 4.4852 6.8021 39 1 3.8676 2.5242 7.9836 40 1 4.9031 3.7624 7.2338 41 1 3.2741 4.1930 7.8083 42 1 0.7328 1.2732 4.9768 43 1 2.4456 0.7928 5.0387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331081777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:44 Heat of formation + Delta-G solvation = -120.787551 kcal Electronic energy + Delta-G solvation = -21913.587139 eV Core-core repulsion = 18764.334239 eV Total energy + Delta-G solvation = -3149.252899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90571 -39.82075 -37.33118 -36.54121 -34.10360 -33.05343 -31.18262 -30.99738 -28.59419 -27.29442 -26.32633 -23.91874 -23.39573 -22.58796 -20.57646 -20.27722 -18.65314 -17.69425 -16.95256 -16.90848 -16.62284 -16.36503 -15.92875 -15.84523 -15.40465 -14.69876 -14.46292 -14.39164 -14.17603 -13.61560 -13.50093 -13.38773 -13.25045 -12.92388 -12.80624 -12.69250 -12.58478 -12.54099 -12.22363 -12.12830 -12.06898 -11.80963 -11.71405 -11.37742 -11.13282 -10.96893 -10.83108 -10.28397 -10.08386 -9.32085 -8.30488 -6.06514 1.39778 1.39886 1.50516 2.16265 2.32352 3.01081 3.04807 3.16203 3.81430 3.86256 3.96460 4.15007 4.25730 4.33283 4.37675 4.47458 4.53567 4.59132 4.62005 4.63414 4.70808 4.73882 4.76351 4.87056 4.91734 4.95168 4.96056 5.01116 5.07971 5.12091 5.32130 5.35669 5.40392 5.43988 5.48112 5.58501 5.62853 5.73991 6.27951 6.46256 6.63310 7.25868 7.55609 8.18616 8.73169 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.004540 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.184081 B = 6166.058665 C = 6332.263851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 N -0.461 5.461 4 C -0.340 4.340 5 H 0.057 0.943 6 C 0.002 3.998 7 N -0.895 5.895 8 Si 0.980 3.020 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.263 1.263 12 C 0.449 3.551 13 O -0.621 6.621 14 C -0.119 4.119 15 C -0.056 4.056 16 H 0.039 0.961 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.133 4.133 20 C 0.086 3.914 21 H 0.085 0.915 22 O -0.410 6.410 23 C 0.025 3.975 24 C -0.106 4.106 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.272 0.728 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.099 0.901 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -1.354 16.285 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 N -0.181 5.181 4 C -0.469 4.469 5 H 0.075 0.925 6 C -0.200 4.200 7 N -0.532 5.532 8 Si 0.803 3.197 9 H -0.206 1.206 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.239 3.761 13 O -0.508 6.508 14 C -0.159 4.159 15 C -0.075 4.075 16 H 0.058 0.942 17 C -0.151 4.151 18 C -0.145 4.145 19 C -0.170 4.170 20 C 0.029 3.971 21 H 0.103 0.897 22 O -0.329 6.329 23 C -0.071 4.071 24 C -0.144 4.144 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.863 -0.957 16.002 17.438 hybrid contribution 0.493 0.443 -1.063 1.253 sum -6.370 -0.515 14.939 16.249 Atomic orbital electron populations 1.22106 0.95217 1.02466 1.01304 1.21526 0.94049 0.83659 1.02837 1.43788 1.56703 1.12983 1.04646 1.19278 1.36345 0.97954 0.93281 0.92489 1.26136 0.93238 0.96687 1.03902 1.69996 1.29706 1.18333 1.35203 0.85221 0.78868 0.77932 0.77658 1.20555 1.19613 1.18721 1.21431 0.80566 0.87496 0.86577 1.90446 1.51652 1.20927 1.87740 1.21698 1.03457 0.99221 0.91528 1.20638 0.99066 0.94683 0.93107 0.94219 1.21584 0.98518 0.96522 0.98488 1.21327 1.00580 0.97818 0.94756 1.22012 1.00260 0.97796 0.96942 1.22270 0.81819 0.94210 0.98791 0.89702 1.88003 1.28948 1.85760 1.30219 1.22905 0.99356 0.99960 0.84873 1.21734 1.03190 0.97196 0.92247 0.92422 0.94274 0.89660 0.90598 0.91690 0.91899 0.89552 0.87950 0.94088 0.91448 0.91919 0.94119 0.89223 0.91046 0.92780 0.89920 0.93229 0.88232 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 10.15 71.98 0.73 -4.53 16 2 C 0.10 4.48 5.41 86.38 0.47 4.95 16 3 N -0.46 -24.42 2.50 -635.53 -1.59 -26.01 16 4 C -0.34 -20.02 8.84 84.04 0.74 -19.28 16 5 H 0.06 3.58 7.82 -2.91 -0.02 3.56 16 6 C 0.00 0.13 4.95 84.93 0.42 0.55 16 7 N -0.89 -50.11 11.61 21.66 0.25 -49.86 16 8 Si 0.98 43.89 29.59 68.60 2.03 45.92 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 12 C 0.45 22.99 7.31 87.65 0.64 23.63 16 13 O -0.62 -36.99 13.88 -3.07 -0.04 -37.04 16 14 C -0.12 -4.44 3.78 29.85 0.11 -4.33 16 15 C -0.06 -1.94 1.69 -10.80 -0.02 -1.95 16 16 H 0.04 1.71 7.49 -2.38 -0.02 1.69 16 17 C -0.11 -3.88 4.94 30.59 0.15 -3.73 16 18 C -0.11 -3.08 5.78 30.60 0.18 -2.91 16 19 C -0.13 -2.78 5.63 30.60 0.17 -2.60 16 20 C 0.09 1.91 2.92 30.61 0.09 2.00 16 21 H 0.09 1.38 7.78 -2.39 -0.02 1.36 16 22 O -0.41 -11.22 9.00 -148.98 -1.34 -12.56 16 23 C 0.03 0.48 10.82 113.37 1.23 1.70 16 24 C -0.11 -2.60 4.95 30.61 0.15 -2.45 16 25 H 0.06 1.80 6.60 -2.38 -0.02 1.79 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.08 3.71 5.76 -2.39 -0.01 3.70 16 29 H 0.06 2.55 6.66 -2.39 -0.02 2.53 16 30 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.09 3.04 7.41 -2.39 -0.02 3.03 16 32 H 0.10 3.21 6.54 -2.39 -0.02 3.19 16 33 H 0.04 1.79 5.95 -2.39 -0.01 1.78 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.37 7.68 -2.39 -0.02 1.35 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.30 7.87 -2.38 -0.02 1.28 16 39 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 0.79 7.87 -2.39 -0.02 0.77 16 42 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -73.10 332.02 5.34 -67.76 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.97 Total: 20.73 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 5.06 Total: -8.94 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.34 Total: -75.87 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -1.38 Total: -49.59 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.10 5.34 -67.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331081777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.025 kcal (2) G-P(sol) polarization free energy of solvation -73.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds