Wall clock time and date at job start Mon Mar 30 2020 01:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47263 * 2 1 4 4 C 1.37096 * 120.00504 * 95.13787 * 3 2 1 5 5 H 1.07997 * 120.00279 * 213.87983 * 4 3 2 6 6 C 1.38945 * 119.99813 * 33.87880 * 4 3 2 7 7 N 1.31420 * 120.00358 * 22.44327 * 6 4 3 8 8 Si 1.86796 * 119.99962 * 202.16985 * 6 4 3 9 9 H 1.48506 * 109.47178 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47444 * 119.99877 * 8 6 4 11 11 H 1.48500 * 109.47470 * 240.00134 * 8 6 4 12 12 C 1.34782 * 119.99712 * 275.13324 * 3 2 1 13 13 O 1.21291 * 119.99867 * 180.02562 * 12 3 2 14 14 C 1.50707 * 119.99790 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.46947 * 179.97438 * 14 12 3 16 16 H 1.08999 * 109.47140 * 54.99831 * 15 14 12 17 17 C 1.53005 * 109.46930 * 295.00211 * 15 14 12 18 18 C 1.53003 * 109.46930 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.46813 * 59.99657 * 18 17 15 20 20 C 1.52992 * 109.47443 * 299.99894 * 19 18 17 21 21 H 1.09005 * 109.47048 * 179.97438 * 20 19 18 22 22 O 1.42893 * 109.47243 * 299.99972 * 20 19 18 23 23 C 1.42901 * 114.00356 * 269.99817 * 22 20 19 24 24 C 1.52990 * 109.47012 * 175.00223 * 15 14 12 25 25 H 1.09008 * 109.47248 * 300.00353 * 1 2 3 26 26 H 1.09000 * 109.47274 * 59.99839 * 1 2 3 27 27 H 1.08992 * 109.47515 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46916 * 239.99285 * 2 1 3 29 29 H 1.08998 * 109.46993 * 119.99444 * 2 1 3 30 30 H 0.96997 * 120.00006 * 179.97438 * 7 6 4 31 31 H 1.08989 * 109.47176 * 299.99682 * 14 12 3 32 32 H 1.08995 * 109.46990 * 60.00094 * 14 12 3 33 33 H 1.08999 * 109.46899 * 299.99767 * 17 15 14 34 34 H 1.08997 * 109.47160 * 59.99966 * 17 15 14 35 35 H 1.08999 * 109.47043 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.47140 * 299.99619 * 18 17 15 37 37 H 1.09000 * 109.46734 * 60.00565 * 19 18 17 38 38 H 1.09009 * 109.46834 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.46614 * 60.00418 * 23 22 20 40 40 H 1.09003 * 109.46893 * 179.97438 * 23 22 20 41 41 H 1.08993 * 109.47282 * 299.99814 * 23 22 20 42 42 H 1.09004 * 109.47195 * 299.99939 * 24 15 14 43 43 H 1.08999 * 109.47488 * 59.99821 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3471 1.9921 1.1825 5 1 2.1784 3.0514 1.3082 6 6 2.8974 1.2484 2.2191 7 7 3.5052 0.1120 1.9620 8 14 2.7798 1.8676 3.9775 9 1 2.0581 3.1654 3.9982 10 1 2.0425 0.8775 4.8029 11 1 4.1459 2.0528 4.5296 12 6 2.1445 2.0513 -1.1626 13 8 2.5493 3.1947 -1.1627 14 6 1.7826 1.3799 -2.4624 15 6 2.0155 2.3521 -3.6207 16 1 3.0430 2.7144 -3.5900 17 6 1.0535 3.5352 -3.4946 18 6 1.2868 4.5077 -4.6526 19 6 1.0396 3.7885 -5.9802 20 6 2.0015 2.6055 -6.1062 21 1 1.8250 2.0929 -7.0518 22 8 3.3486 3.0804 -6.0654 23 6 3.8893 3.4059 -7.3475 24 6 1.7678 1.6326 -4.9480 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8897 -0.4070 2.6857 31 1 2.4042 0.4952 -2.5997 32 1 0.7331 1.0867 -2.4400 33 1 0.0260 3.1729 -3.5254 34 1 1.2300 4.0478 -2.5490 35 1 0.6012 5.3504 -4.5630 36 1 2.3143 4.8700 -4.6214 37 1 0.0120 3.4264 -6.0113 38 1 1.2054 4.4815 -6.8051 39 1 3.2862 4.1884 -7.8080 40 1 4.9140 3.7587 -7.2307 41 1 3.8799 2.5194 -7.9815 42 1 2.4531 0.7897 -5.0377 43 1 0.7403 1.2703 -4.9787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331081778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:46 Heat of formation + Delta-G solvation = -100.107597 kcal Electronic energy + Delta-G solvation = -21911.104826 eV Core-core repulsion = 18762.748676 eV Total energy + Delta-G solvation = -3148.356149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.51854 -38.30367 -36.02653 -34.75864 -32.24427 -31.57098 -30.01181 -29.34766 -27.07555 -26.43772 -24.48281 -22.28257 -22.21680 -21.23905 -19.37823 -18.50944 -16.69850 -16.17910 -15.70538 -15.60079 -15.24763 -14.90331 -14.57008 -14.07477 -13.94272 -13.38284 -13.02233 -12.84155 -12.73436 -12.42685 -12.07166 -11.91183 -11.77643 -11.65520 -11.46255 -11.13857 -11.07033 -11.01917 -10.85177 -10.61314 -10.28078 -10.23974 -10.16029 -10.02530 -9.84066 -9.69874 -9.31356 -8.85036 -8.15497 -7.37737 -6.25073 -3.85041 3.19981 3.30670 3.37401 3.86178 4.05256 4.22788 4.81098 4.85938 4.96927 5.08474 5.17238 5.27457 5.30265 5.44567 5.50061 5.59584 5.62430 5.70610 5.76912 5.80138 5.93446 6.00535 6.07054 6.09353 6.16429 6.19490 6.28503 6.31162 6.41761 6.54477 6.60736 6.63392 6.70883 6.96118 7.02301 7.09141 7.32074 7.34942 7.67569 8.34984 8.62233 9.30386 9.53922 10.15558 10.78819 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.004497 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.957536 B = 6225.203381 C = 6370.410622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.446 5.446 4 C -0.303 4.303 5 H 0.091 0.909 6 C 0.033 3.967 7 N -0.872 5.872 8 Si 0.914 3.086 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.283 1.283 12 C 0.460 3.540 13 O -0.578 6.578 14 C -0.131 4.131 15 C -0.061 4.061 16 H 0.084 0.916 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.139 4.139 20 C 0.091 3.909 21 H 0.054 0.946 22 O -0.373 6.373 23 C 0.031 3.969 24 C -0.112 4.112 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.112 0.888 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 0.178 -14.723 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.165 5.165 4 C -0.431 4.431 5 H 0.109 0.891 6 C -0.170 4.170 7 N -0.511 5.511 8 Si 0.741 3.259 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.209 1.209 12 C 0.249 3.751 13 O -0.462 6.462 14 C -0.171 4.171 15 C -0.080 4.080 16 H 0.102 0.898 17 C -0.154 4.154 18 C -0.148 4.148 19 C -0.177 4.177 20 C 0.033 3.967 21 H 0.072 0.928 22 O -0.292 6.292 23 C -0.066 4.066 24 C -0.149 4.149 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.960 0.615 -14.419 15.261 hybrid contribution -0.183 -0.060 0.525 0.559 sum -5.143 0.555 -13.894 14.825 Atomic orbital electron populations 1.22206 0.98430 1.00158 1.01404 1.21552 0.91567 0.85731 1.03968 1.43563 1.56092 1.11810 1.05050 1.19486 1.39314 0.95372 0.88928 0.89128 1.25298 0.94739 0.96581 1.00395 1.69944 1.32986 1.15565 1.32556 0.86068 0.78046 0.79058 0.82734 1.19257 1.20716 1.20885 1.20326 0.82038 0.87896 0.84865 1.90471 1.50168 1.18767 1.86804 1.21706 1.01793 0.99207 0.94439 1.20732 1.01493 0.94515 0.91245 0.89809 1.21681 0.97548 0.96370 0.99795 1.21391 1.01977 0.97696 0.93716 1.22029 0.99150 0.97857 0.98668 1.22127 0.82355 0.94126 0.98063 0.92835 1.88024 1.27842 1.85412 1.27942 1.22741 0.99172 0.98752 0.85946 1.21743 1.01427 0.97263 0.94502 0.92578 0.93920 0.93270 0.93507 0.87073 0.92454 0.90569 0.90856 0.93572 0.89243 0.92897 0.91357 0.91464 0.92626 0.94509 0.89916 0.94503 0.91604 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.15 37.16 0.38 -2.63 16 2 C 0.10 2.13 5.44 -4.04 -0.02 2.11 16 3 N -0.45 -11.48 2.56 -114.81 -0.29 -11.77 16 4 C -0.30 -8.56 8.98 -14.94 -0.13 -8.69 16 5 H 0.09 2.69 7.70 -52.49 -0.40 2.29 16 6 C 0.03 0.89 4.92 -17.47 -0.09 0.80 16 7 N -0.87 -23.89 11.34 55.50 0.63 -23.26 16 8 Si 0.91 20.94 29.61 -169.99 -5.03 15.91 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.46 11.36 7.31 -10.98 -0.08 11.28 16 13 O -0.58 -16.10 13.79 5.55 0.08 -16.02 16 14 C -0.13 -2.48 3.78 -27.88 -0.11 -2.59 16 15 C -0.06 -1.06 1.69 -90.62 -0.15 -1.21 16 16 H 0.08 1.72 7.49 -51.93 -0.39 1.33 16 17 C -0.12 -1.98 4.94 -26.73 -0.13 -2.11 16 18 C -0.11 -1.61 5.78 -26.73 -0.15 -1.76 16 19 C -0.14 -1.67 5.63 -26.74 -0.15 -1.82 16 20 C 0.09 1.14 2.92 -26.71 -0.08 1.06 16 21 H 0.05 0.56 7.79 -51.93 -0.40 0.16 16 22 O -0.37 -5.29 9.00 -35.23 -0.32 -5.61 16 23 C 0.03 0.32 10.82 101.05 1.09 1.41 16 24 C -0.11 -1.52 4.95 -26.71 -0.13 -1.65 16 25 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 26 H 0.04 0.73 6.61 -51.93 -0.34 0.39 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.95 6.65 -51.93 -0.35 0.60 16 29 H 0.11 2.73 5.35 -51.93 -0.28 2.45 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.08 1.38 7.41 -51.94 -0.38 1.00 16 32 H 0.07 1.25 6.55 -51.93 -0.34 0.91 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.85 5.95 -51.93 -0.31 1.54 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.10 7.68 -51.93 -0.40 0.71 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.60 7.87 -51.92 -0.41 0.19 16 39 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -31.20 331.37 -7.05 -38.25 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.35 Total: 3.31 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 0.24 Total: -5.80 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.34 Total: -35.03 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.24 Total: -21.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.20 -7.05 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331081778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.853 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds