Wall clock time and date at job start Mon Mar 30 2020 01:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47210 * 2 1 4 4 C 1.46500 * 120.00239 * 89.99747 * 3 2 1 5 5 C 1.50696 * 109.47323 * 270.00422 * 4 3 2 6 6 H 1.07995 * 120.00332 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99983 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 C 1.34775 * 119.99856 * 269.99969 * 3 2 1 14 14 O 1.21285 * 119.99693 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00250 * 0.02562 * 13 3 2 16 16 H 1.08998 * 110.45685 * 57.39044 * 15 13 3 17 17 C 1.54516 * 110.50585 * 294.64347 * 15 13 3 18 18 C 1.54484 * 104.05757 * 241.35299 * 17 15 13 19 19 O 1.44423 * 104.80362 * 336.02186 * 18 17 15 20 20 C 1.44419 * 105.27733 * 40.51390 * 19 18 17 21 21 H 1.09003 * 110.46560 * 78.36505 * 20 19 18 22 22 C 1.52999 * 110.37665 * 200.65644 * 20 19 18 23 23 C 1.53004 * 109.46953 * 295.38189 * 22 20 19 24 24 C 1.53001 * 109.46981 * 55.37776 * 22 20 19 25 25 H 1.09006 * 109.47209 * 299.99943 * 1 2 3 26 26 H 1.08998 * 109.47025 * 59.99945 * 1 2 3 27 27 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47118 * 239.99609 * 2 1 3 29 29 H 1.09005 * 109.47159 * 119.99667 * 2 1 3 30 30 H 1.09004 * 109.47134 * 149.99735 * 4 3 2 31 31 H 1.09010 * 109.47025 * 30.00169 * 4 3 2 32 32 H 0.97000 * 119.99462 * 359.97438 * 8 7 5 33 33 H 1.09001 * 110.51310 * 359.97438 * 17 15 13 34 34 H 1.08994 * 110.50850 * 122.70971 * 17 15 13 35 35 H 1.09003 * 110.36812 * 217.19134 * 18 17 15 36 36 H 1.09000 * 110.46456 * 94.90590 * 18 17 15 37 37 H 1.08990 * 109.47350 * 175.38202 * 22 20 19 38 38 H 1.08998 * 109.46994 * 59.99546 * 23 22 20 39 39 H 1.08991 * 109.47437 * 179.97438 * 23 22 20 40 40 H 1.09002 * 109.47061 * 299.99910 * 23 22 20 41 41 H 1.08999 * 109.46867 * 300.00203 * 24 22 20 42 42 H 1.09000 * 109.47004 * 60.00036 * 24 22 20 43 43 H 1.08999 * 109.46824 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0067 2.7822 1.7037 6 1 0.1159 2.7253 1.0958 7 6 0.9952 3.5057 2.8774 8 7 2.0801 3.5754 3.6175 9 14 -0.5612 4.3868 3.4163 10 1 -0.5692 5.7631 2.8586 11 1 -1.7476 3.6446 2.9195 12 1 -0.6042 4.4534 4.8992 13 6 2.2430 2.0165 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9912 1.3063 -2.4723 16 1 0.9577 0.9645 -2.5269 17 6 2.9665 0.1196 -2.6396 18 6 3.7679 0.4692 -3.9132 19 8 2.9102 1.3636 -4.6550 20 6 2.3188 2.2324 -3.6645 21 1 3.0273 3.0037 -3.3624 22 6 1.0398 2.8700 -4.2107 23 6 1.3875 3.7818 -5.3892 24 6 0.0831 1.7722 -4.6803 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.0645 2.7985 1.1383 31 1 2.5506 1.3451 2.0284 32 1 2.8882 3.1176 3.3378 33 1 3.6310 0.0469 -1.7786 34 1 2.4157 -0.8107 -2.7783 35 1 3.9699 -0.4312 -4.4935 36 1 4.7009 0.9682 -3.6514 37 1 0.5624 3.4566 -3.4260 38 1 1.8649 3.1950 -6.1740 39 1 0.4763 4.2356 -5.7786 40 1 2.0691 4.5638 -5.0546 41 1 0.5605 1.1855 -5.4652 42 1 -0.1646 1.1225 -3.8408 43 1 -0.8280 2.2264 -5.0699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331205344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:29 Heat of formation + Delta-G solvation = -98.454008 kcal Electronic energy + Delta-G solvation = -22391.033800 eV Core-core repulsion = 19242.749356 eV Total energy + Delta-G solvation = -3148.284444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46859 -38.26557 -35.51904 -34.84047 -33.23491 -31.97321 -30.00454 -28.47895 -27.10918 -26.73257 -23.97943 -23.15048 -22.64697 -21.42691 -19.90052 -18.64956 -17.05383 -16.68291 -16.11158 -15.80858 -15.34275 -14.68054 -14.35468 -13.99232 -13.72691 -13.51864 -13.44039 -13.24731 -12.92436 -12.65976 -12.44471 -12.12315 -11.95570 -11.80298 -11.48401 -11.36817 -11.27959 -11.19949 -10.93404 -10.69344 -10.65163 -10.57005 -10.41982 -10.35185 -10.13425 -9.62984 -9.13842 -8.97148 -8.39067 -7.67880 -6.39120 -4.10949 3.25861 3.42414 3.45745 3.60148 3.72038 3.96968 4.51645 4.57201 4.67198 4.87440 4.99600 5.10494 5.14381 5.16229 5.29033 5.35532 5.40356 5.55666 5.64778 5.66867 5.73624 5.75353 5.76275 5.81802 5.84483 5.91662 6.04163 6.06293 6.12669 6.18798 6.23526 6.40299 6.46447 6.69635 6.77798 6.89854 7.09807 7.38304 8.02780 8.25256 8.42532 8.76459 8.95944 9.58391 10.97918 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.005763 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.155062 B = 4857.830809 C = 5251.922517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.591 5.591 4 C 0.236 3.764 5 C -0.602 4.602 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 1.072 2.928 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.515 3.485 14 O -0.539 6.539 15 C -0.145 4.145 16 H 0.108 0.892 17 C -0.145 4.145 18 C 0.047 3.953 19 O -0.368 6.368 20 C 0.095 3.905 21 H 0.089 0.911 22 C -0.090 4.090 23 C -0.141 4.141 24 C -0.145 4.145 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.020 0.980 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -9.203 -14.703 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.322 5.322 4 C 0.116 3.884 5 C -0.640 4.640 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.547 5.547 9 Si 0.901 3.099 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.209 1.209 13 C 0.301 3.699 14 O -0.417 6.417 15 C -0.166 4.166 16 H 0.126 0.874 17 C -0.183 4.183 18 C -0.030 4.030 19 O -0.287 6.287 20 C 0.038 3.962 21 H 0.106 0.894 22 C -0.108 4.108 23 C -0.199 4.199 24 C -0.202 4.202 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.569 -7.638 -13.704 15.767 hybrid contribution 0.550 -1.115 -0.797 1.477 sum -1.019 -8.753 -14.501 16.968 Atomic orbital electron populations 1.22216 0.96211 1.00938 1.03408 1.21574 0.94831 0.83637 1.01996 1.48021 1.63658 1.13255 1.07237 1.19356 0.97953 0.92141 0.78955 1.22259 0.97731 1.34619 1.09434 0.92868 1.25790 1.03303 0.96025 0.93411 1.70775 1.02108 1.42125 1.39662 0.83495 0.74069 0.76189 0.76193 1.21378 1.21545 1.20936 1.20025 0.78445 0.86584 0.84823 1.90660 1.46468 1.17587 1.86990 1.22847 1.02298 0.96689 0.94784 0.87386 1.22973 0.98188 0.97903 0.99228 1.23356 0.93644 0.93950 0.92057 1.89070 1.61357 1.48000 1.30318 1.22942 0.95592 0.92182 0.85514 0.89353 1.21152 0.94230 0.96787 0.98642 1.21743 1.01168 0.99088 0.97856 1.21827 0.98519 0.98441 1.01383 0.90511 0.93311 0.92730 0.91193 0.90916 0.94982 0.96183 0.92245 0.90077 0.89919 0.89130 0.92302 0.89812 0.92185 0.92872 0.92658 0.91892 0.92824 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.22 37.16 0.38 -2.23 16 2 C 0.10 1.65 5.77 -4.04 -0.02 1.63 16 3 N -0.59 -12.30 2.46 -175.06 -0.43 -12.73 16 4 C 0.24 6.06 4.51 -5.20 -0.02 6.04 16 5 C -0.60 -16.96 8.92 -34.44 -0.31 -17.27 16 6 H 0.05 1.51 7.42 -52.49 -0.39 1.12 16 7 C 0.02 0.54 5.46 -17.82 -0.10 0.45 16 8 N -0.91 -27.69 13.65 55.43 0.76 -26.93 16 9 Si 1.07 25.63 29.90 -169.99 -5.08 20.55 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.52 10.61 6.85 -10.99 -0.08 10.53 16 14 O -0.54 -13.46 15.03 5.55 0.08 -13.38 16 15 C -0.14 -2.22 2.04 -90.20 -0.18 -2.40 16 16 H 0.11 1.56 4.77 -51.93 -0.25 1.31 16 17 C -0.14 -1.77 4.78 -25.16 -0.12 -1.89 16 18 C 0.05 0.55 7.63 37.94 0.29 0.84 16 19 O -0.37 -5.16 10.12 -35.23 -0.36 -5.51 16 20 C 0.10 1.46 2.35 -25.96 -0.06 1.40 16 21 H 0.09 1.58 6.90 -51.93 -0.36 1.22 16 22 C -0.09 -1.25 2.84 -90.62 -0.26 -1.51 16 23 C -0.14 -1.76 9.10 37.16 0.34 -1.42 16 24 C -0.14 -1.73 8.77 37.16 0.33 -1.40 16 25 H 0.08 1.43 7.26 -51.93 -0.38 1.05 16 26 H 0.05 0.74 7.21 -51.93 -0.37 0.36 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.90 4.46 -51.93 -0.23 0.67 16 29 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 30 H 0.03 0.93 7.29 -51.93 -0.38 0.55 16 31 H 0.02 0.52 7.76 -51.92 -0.40 0.12 16 32 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 33 H 0.08 1.04 7.32 -51.93 -0.38 0.65 16 34 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.74 7.61 -51.93 -0.40 0.34 16 42 H 0.05 0.63 6.11 -51.93 -0.32 0.32 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -32.70 333.51 -6.94 -39.64 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.12 Total: 0.58 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 0.18 Total: -7.25 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.33 Total: -39.66 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.27 Total: -18.89 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.70 -6.94 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331205344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.811 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds