Wall clock time and date at job start Mon Mar 30 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47210 * 2 1 4 4 C 1.46500 * 120.00239 * 89.99747 * 3 2 1 5 5 C 1.50696 * 109.47323 * 270.00422 * 4 3 2 6 6 H 1.07995 * 120.00332 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99983 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 C 1.34775 * 119.99856 * 269.99969 * 3 2 1 14 14 O 1.21285 * 119.99693 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00250 * 0.02562 * 13 3 2 16 16 H 1.08998 * 110.45685 * 57.39044 * 15 13 3 17 17 C 1.54516 * 110.50585 * 294.64347 * 15 13 3 18 18 C 1.54484 * 104.05757 * 241.35299 * 17 15 13 19 19 O 1.44423 * 104.80362 * 336.02186 * 18 17 15 20 20 C 1.44419 * 105.27733 * 40.51390 * 19 18 17 21 21 H 1.09003 * 110.46560 * 78.36505 * 20 19 18 22 22 C 1.52999 * 110.37665 * 200.65644 * 20 19 18 23 23 C 1.53004 * 109.46953 * 295.38189 * 22 20 19 24 24 C 1.53001 * 109.46981 * 55.37776 * 22 20 19 25 25 H 1.09006 * 109.47209 * 299.99943 * 1 2 3 26 26 H 1.08998 * 109.47025 * 59.99945 * 1 2 3 27 27 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47118 * 239.99609 * 2 1 3 29 29 H 1.09005 * 109.47159 * 119.99667 * 2 1 3 30 30 H 1.09004 * 109.47134 * 149.99735 * 4 3 2 31 31 H 1.09010 * 109.47025 * 30.00169 * 4 3 2 32 32 H 0.97000 * 119.99462 * 359.97438 * 8 7 5 33 33 H 1.09001 * 110.51310 * 359.97438 * 17 15 13 34 34 H 1.08994 * 110.50850 * 122.70971 * 17 15 13 35 35 H 1.09003 * 110.36812 * 217.19134 * 18 17 15 36 36 H 1.09000 * 110.46456 * 94.90590 * 18 17 15 37 37 H 1.08990 * 109.47350 * 175.38202 * 22 20 19 38 38 H 1.08998 * 109.46994 * 59.99546 * 23 22 20 39 39 H 1.08991 * 109.47437 * 179.97438 * 23 22 20 40 40 H 1.09002 * 109.47061 * 299.99910 * 23 22 20 41 41 H 1.08999 * 109.46867 * 300.00203 * 24 22 20 42 42 H 1.09000 * 109.47004 * 60.00036 * 24 22 20 43 43 H 1.08999 * 109.46824 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0067 2.7822 1.7037 6 1 0.1159 2.7253 1.0958 7 6 0.9952 3.5057 2.8774 8 7 2.0801 3.5754 3.6175 9 14 -0.5612 4.3868 3.4163 10 1 -0.5692 5.7631 2.8586 11 1 -1.7476 3.6446 2.9195 12 1 -0.6042 4.4534 4.8992 13 6 2.2430 2.0165 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9912 1.3063 -2.4723 16 1 0.9577 0.9645 -2.5269 17 6 2.9665 0.1196 -2.6396 18 6 3.7679 0.4692 -3.9132 19 8 2.9102 1.3636 -4.6550 20 6 2.3188 2.2324 -3.6645 21 1 3.0273 3.0037 -3.3624 22 6 1.0398 2.8700 -4.2107 23 6 1.3875 3.7818 -5.3892 24 6 0.0831 1.7722 -4.6803 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.0645 2.7985 1.1383 31 1 2.5506 1.3451 2.0284 32 1 2.8882 3.1176 3.3378 33 1 3.6310 0.0469 -1.7786 34 1 2.4157 -0.8107 -2.7783 35 1 3.9699 -0.4312 -4.4935 36 1 4.7009 0.9682 -3.6514 37 1 0.5624 3.4566 -3.4260 38 1 1.8649 3.1950 -6.1740 39 1 0.4763 4.2356 -5.7786 40 1 2.0691 4.5638 -5.0546 41 1 0.5605 1.1855 -5.4652 42 1 -0.1646 1.1225 -3.8408 43 1 -0.8280 2.2264 -5.0699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331205344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:28 Heat of formation + Delta-G solvation = -119.441707 kcal Electronic energy + Delta-G solvation = -22391.943895 eV Core-core repulsion = 19242.749356 eV Total energy + Delta-G solvation = -3149.194539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81434 -39.70963 -37.20903 -35.90772 -35.25786 -33.30325 -31.51138 -29.62940 -28.66757 -28.03741 -25.64067 -24.47384 -24.23389 -22.67129 -21.07145 -20.13578 -19.14743 -18.08878 -17.41336 -17.26029 -16.47975 -16.10934 -15.93214 -15.60153 -15.23735 -14.85545 -14.63027 -14.52470 -14.33501 -13.96966 -13.93118 -13.53042 -13.42281 -13.32043 -12.97794 -12.61804 -12.56543 -12.53670 -12.39918 -12.19587 -11.98216 -11.90464 -11.66996 -11.63499 -11.46511 -11.18917 -10.82646 -10.62531 -10.57669 -9.53041 -8.69175 -6.44158 1.46866 1.56004 1.65908 1.73641 2.16110 2.51683 2.83257 3.09328 3.46582 3.52110 3.60597 3.93641 3.97906 4.04969 4.10451 4.19216 4.27908 4.36233 4.47809 4.53388 4.68852 4.69627 4.73040 4.78017 4.82824 4.86045 4.88156 4.89206 4.96022 4.97012 5.03331 5.05786 5.17999 5.38892 5.42176 5.46390 5.57387 5.79468 5.81685 6.14443 6.44844 6.62968 7.24678 7.37968 8.65511 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.005763 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.155062 B = 4857.830809 C = 5251.922517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.595 5.595 4 C 0.246 3.754 5 C -0.606 4.606 6 H 0.048 0.952 7 C -0.033 4.033 8 N -0.934 5.934 9 Si 1.117 2.883 10 H -0.282 1.282 11 H -0.266 1.266 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.596 6.596 15 C -0.134 4.134 16 H 0.127 0.873 17 C -0.141 4.141 18 C 0.042 3.958 19 O -0.368 6.368 20 C 0.099 3.901 21 H 0.051 0.949 22 C -0.094 4.094 23 C -0.137 4.137 24 C -0.137 4.137 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.076 0.924 30 H -0.010 1.010 31 H 0.018 0.982 32 H 0.255 0.745 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -11.647 -16.524 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.325 5.325 4 C 0.125 3.875 5 C -0.645 4.645 6 H 0.066 0.934 7 C -0.231 4.231 8 N -0.571 5.571 9 Si 0.939 3.061 10 H -0.209 1.209 11 H -0.191 1.191 12 H -0.201 1.201 13 C 0.295 3.705 14 O -0.478 6.478 15 C -0.155 4.155 16 H 0.144 0.856 17 C -0.179 4.179 18 C -0.034 4.034 19 O -0.287 6.287 20 C 0.040 3.960 21 H 0.069 0.931 22 C -0.112 4.112 23 C -0.194 4.194 24 C -0.194 4.194 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.008 0.992 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.278 -10.142 -15.550 18.853 hybrid contribution 1.166 -0.380 -0.264 1.254 sum -2.112 -10.522 -15.814 19.111 Atomic orbital electron populations 1.22159 0.95380 1.03071 1.01600 1.21955 0.95485 0.80933 1.04221 1.48069 1.63713 1.15057 1.05646 1.18889 0.95773 0.91508 0.81370 1.22515 0.98175 1.34511 1.09251 0.93406 1.27299 1.05476 0.96548 0.93813 1.70899 1.02424 1.43293 1.40474 0.82936 0.71337 0.75503 0.76354 1.20864 1.19077 1.20110 1.21019 0.76942 0.86151 0.86357 1.90631 1.48818 1.20352 1.87952 1.22825 1.04160 0.97436 0.91079 0.85557 1.23069 0.97675 0.97892 0.99274 1.23580 0.92781 0.94758 0.92276 1.89068 1.61610 1.48004 1.30043 1.22731 0.95449 0.91748 0.86039 0.93101 1.21166 0.94046 0.97609 0.98415 1.21713 1.01725 0.98614 0.97395 1.21777 0.98387 0.97630 1.01625 0.94348 0.93039 0.88575 0.87071 0.90583 0.99236 0.96409 0.93612 0.90702 0.85930 0.85393 0.93222 0.92326 0.91556 0.91183 0.94052 0.91128 0.92497 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 10.22 71.98 0.74 -3.91 16 2 C 0.10 2.86 5.77 86.38 0.50 3.36 16 3 N -0.59 -25.05 2.46 -826.16 -2.03 -27.08 16 4 C 0.25 13.24 4.51 85.63 0.39 13.63 16 5 C -0.61 -35.14 8.92 25.60 0.23 -34.91 16 6 H 0.05 2.77 7.42 -2.91 -0.02 2.75 16 7 C -0.03 -1.96 5.46 84.65 0.46 -1.50 16 8 N -0.93 -58.51 13.65 21.45 0.29 -58.22 16 9 Si 1.12 51.78 29.90 68.60 2.05 53.83 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.51 21.28 6.85 87.66 0.60 21.88 16 14 O -0.60 -31.55 15.03 -3.04 -0.05 -31.59 16 15 C -0.13 -3.91 2.04 -10.52 -0.02 -3.93 16 16 H 0.13 3.26 4.77 -2.39 -0.01 3.25 16 17 C -0.14 -2.98 4.78 31.61 0.15 -2.83 16 18 C 0.04 0.87 7.63 72.49 0.55 1.42 16 19 O -0.37 -9.49 10.12 -148.98 -1.51 -11.00 16 20 C 0.10 2.98 2.35 31.10 0.07 3.05 16 21 H 0.05 1.93 6.90 -2.39 -0.02 1.91 16 22 C -0.09 -2.56 2.84 -10.79 -0.03 -2.59 16 23 C -0.14 -3.32 9.10 71.98 0.65 -2.67 16 24 C -0.14 -2.89 8.77 71.98 0.63 -2.26 16 25 H 0.04 1.38 7.26 -2.38 -0.02 1.36 16 26 H 0.05 1.41 7.21 -2.39 -0.02 1.40 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.11 2.40 4.46 -2.39 -0.01 2.39 16 29 H 0.08 2.23 7.89 -2.38 -0.02 2.21 16 30 H -0.01 -0.64 7.29 -2.38 -0.02 -0.66 16 31 H 0.02 0.96 7.76 -2.38 -0.02 0.94 16 32 H 0.25 16.14 7.22 -92.71 -0.67 15.47 16 33 H 0.07 1.72 7.32 -2.39 -0.02 1.70 16 34 H 0.12 1.68 7.71 -2.39 -0.02 1.66 16 35 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.51 7.85 -2.39 -0.02 1.49 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.40 7.61 -2.39 -0.02 1.38 16 42 H 0.06 1.15 6.11 -2.39 -0.01 1.14 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -75.75 333.51 4.76 -70.98 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.08 Total: 14.34 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.92 Total: -11.25 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.74 Total: -85.30 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.55 Total: -42.60 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.05 Total: 53.83 kcal Total: -75.75 4.76 -70.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331205344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.459 kcal (2) G-P(sol) polarization free energy of solvation -75.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds