Wall clock time and date at job start Mon Mar 30 2020 01:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47233 * 2 1 4 4 C 1.46497 * 120.00090 * 88.64342 * 3 2 1 5 5 C 1.50702 * 109.46759 * 90.00140 * 4 3 2 6 6 H 1.08000 * 120.00047 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99616 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00401 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99816 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47251 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47492 * 119.99782 * 9 7 5 12 12 H 1.48502 * 109.47078 * 239.99426 * 9 7 5 13 13 C 1.34777 * 119.99537 * 268.64945 * 3 2 1 14 14 O 1.21270 * 120.00622 * 4.72315 * 13 3 2 15 15 C 1.50710 * 119.99500 * 184.72915 * 13 3 2 16 16 H 1.09004 * 110.45246 * 325.88318 * 15 13 3 17 17 C 1.54503 * 110.51108 * 88.48887 * 15 13 3 18 18 C 1.54480 * 104.06202 * 118.64552 * 17 15 13 19 19 O 1.44425 * 104.80383 * 23.97831 * 18 17 15 20 20 C 1.44422 * 105.27455 * 319.48862 * 19 18 17 21 21 H 1.09003 * 110.37529 * 281.68129 * 20 19 18 22 22 C 1.52996 * 110.37357 * 159.34268 * 20 19 18 23 23 C 1.52994 * 109.47249 * 64.62019 * 22 20 19 24 24 C 1.53000 * 109.47222 * 184.62213 * 22 20 19 25 25 H 1.08998 * 109.47007 * 178.96520 * 1 2 3 26 26 H 1.08998 * 109.47051 * 298.96152 * 1 2 3 27 27 H 1.08992 * 109.47485 * 58.96615 * 1 2 3 28 28 H 1.09009 * 109.46934 * 240.00105 * 2 1 3 29 29 H 1.08998 * 109.47318 * 120.00517 * 2 1 3 30 30 H 1.09000 * 109.47135 * 210.00247 * 4 3 2 31 31 H 1.09001 * 109.46825 * 330.00302 * 4 3 2 32 32 H 0.97000 * 120.00527 * 180.02562 * 8 7 5 33 33 H 1.08998 * 110.51263 * 237.28790 * 17 15 13 34 34 H 1.09006 * 110.51432 * 359.97438 * 17 15 13 35 35 H 1.09002 * 110.37141 * 142.81089 * 18 17 15 36 36 H 1.09000 * 110.36995 * 265.03291 * 18 17 15 37 37 H 1.09004 * 109.47348 * 304.61771 * 22 20 19 38 38 H 1.09000 * 109.47544 * 179.97438 * 23 22 20 39 39 H 1.09005 * 109.46972 * 299.99740 * 23 22 20 40 40 H 1.09000 * 109.47538 * 59.99950 * 23 22 20 41 41 H 1.09001 * 109.47702 * 59.99679 * 24 22 20 42 42 H 1.09000 * 109.47183 * 180.02562 * 24 22 20 43 43 H 1.09005 * 109.47135 * 299.99474 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2342 2.0818 1.2683 5 6 3.6475 1.8486 1.7368 6 1 4.3176 1.2390 1.1488 7 6 4.0845 2.4125 2.9166 8 7 3.2683 3.1543 3.6330 9 14 5.8364 2.1239 3.4970 10 1 6.5461 1.2609 2.5188 11 1 6.5410 3.4262 3.6113 12 1 5.8149 1.4549 4.8226 13 6 2.2689 2.0073 -1.1669 14 8 2.0096 1.4591 -2.2171 15 6 2.8715 3.3887 -1.1666 16 1 2.5125 3.9607 -0.3110 17 6 4.4143 3.3063 -1.1540 18 6 4.8380 3.9994 -2.4680 19 8 3.7379 4.8766 -2.7938 20 6 2.5455 4.1217 -2.4867 21 1 2.3373 3.4024 -3.2788 22 6 1.3546 5.0625 -2.2935 23 6 1.0498 5.7769 -3.6116 24 6 0.1313 4.2538 -1.8570 25 1 -0.3633 -1.0275 -0.0186 26 1 -0.3633 0.4976 0.8991 27 1 -0.3634 0.5298 -0.8805 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0703 3.1500 1.1259 31 1 1.5366 1.7036 2.0156 32 1 3.5759 3.5513 4.4628 33 1 4.8182 3.8397 -0.2935 34 1 4.7413 2.2665 -1.1475 35 1 5.7506 4.5756 -2.3159 36 1 4.9833 3.2610 -3.2566 37 1 1.5946 5.8000 -1.5276 38 1 0.2010 6.4468 -3.4741 39 1 1.9213 6.3531 -3.9225 40 1 0.8097 5.0395 -4.3776 41 1 0.3484 3.7448 -0.9179 42 1 -0.7173 4.9240 -1.7197 43 1 -0.1089 3.5163 -2.6229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331205345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:30 Heat of formation + Delta-G solvation = -102.761816 kcal Electronic energy + Delta-G solvation = -22635.049954 eV Core-core repulsion = 19486.578709 eV Total energy + Delta-G solvation = -3148.471245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17270 -38.10696 -35.23960 -34.82866 -32.88490 -31.98358 -30.14595 -28.08545 -27.04382 -26.83105 -23.93478 -23.12074 -22.25772 -21.20696 -19.84343 -18.24294 -16.63286 -16.53343 -15.98471 -15.66284 -15.24414 -14.73358 -14.34682 -13.95966 -13.59675 -13.35269 -13.15021 -12.93522 -12.75236 -12.43565 -12.22852 -11.92887 -11.92407 -11.64399 -11.50902 -11.30729 -10.98316 -10.96478 -10.92136 -10.70454 -10.62849 -10.51615 -10.29253 -10.20674 -10.04204 -9.74960 -9.38789 -8.95649 -8.57472 -7.75563 -6.22006 -4.28957 3.17876 3.26881 3.29038 3.35031 3.86045 4.19668 4.30726 4.90713 5.08058 5.11224 5.25880 5.32703 5.41217 5.42774 5.51195 5.68394 5.69712 5.79562 5.84438 5.86885 5.87922 5.98029 6.03058 6.07891 6.12413 6.23390 6.24515 6.32072 6.39534 6.44299 6.56880 6.57927 6.61343 6.63078 6.77381 7.16062 7.19174 7.50787 7.72696 8.01769 8.30754 8.75748 8.98110 9.38722 10.84797 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.007592 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.242909 B = 3687.184885 C = 4516.414547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.593 5.593 4 C 0.236 3.764 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.528 3.472 14 O -0.574 6.574 15 C -0.131 4.131 16 H 0.110 0.890 17 C -0.125 4.125 18 C 0.045 3.955 19 O -0.373 6.373 20 C 0.090 3.910 21 H 0.085 0.915 22 C -0.089 4.089 23 C -0.141 4.141 24 C -0.146 4.146 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 1.369 -8.168 8.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.323 5.323 4 C 0.116 3.884 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.316 3.684 14 O -0.456 6.456 15 C -0.152 4.152 16 H 0.128 0.872 17 C -0.164 4.164 18 C -0.031 4.031 19 O -0.292 6.292 20 C 0.033 3.967 21 H 0.103 0.897 22 C -0.107 4.107 23 C -0.198 4.198 24 C -0.203 4.203 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.796 1.396 -8.583 9.135 hybrid contribution 1.039 -0.384 0.880 1.414 sum -1.758 1.012 -7.704 7.966 Atomic orbital electron populations 1.22099 0.96863 1.01190 1.01956 1.21238 0.93494 0.83819 1.02290 1.48244 1.62761 1.13438 1.07822 1.19466 0.97081 0.92570 0.79247 1.21484 0.97069 1.31952 1.06657 0.92064 1.24923 0.97715 0.94827 0.96281 1.69923 1.35414 1.32704 1.14820 0.86520 0.84504 0.78169 0.78793 1.19655 1.20779 1.20881 1.20108 0.77466 0.87445 0.83389 1.90565 1.55209 1.68140 1.31696 1.22601 0.97171 0.95088 1.00343 0.87242 1.22702 0.93046 1.02212 0.98408 1.23425 0.90733 0.93172 0.95819 1.89040 1.14887 1.38525 1.86779 1.23061 0.85796 0.92434 0.95447 0.89732 1.21124 0.93782 0.97287 0.98520 1.21755 1.01234 1.00077 0.96736 1.21812 0.96740 0.99907 1.01836 0.92510 0.92594 0.92772 0.91261 0.90559 0.94417 0.94652 0.92563 0.89212 0.90510 0.89334 0.92691 0.90482 0.92981 0.92154 0.92925 0.92336 0.92464 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.11 2.09 6.11 -4.04 -0.02 2.07 16 3 N -0.59 -12.18 2.46 -175.05 -0.43 -12.61 16 4 C 0.24 5.42 4.94 -5.19 -0.03 5.40 16 5 C -0.53 -13.25 9.00 -34.44 -0.31 -13.56 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -23.92 13.29 55.43 0.74 -23.19 16 9 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.53 10.73 5.39 -10.98 -0.06 10.68 16 14 O -0.57 -12.53 15.20 5.57 0.08 -12.44 16 15 C -0.13 -2.45 1.70 -90.20 -0.15 -2.61 16 16 H 0.11 2.18 5.55 -51.93 -0.29 1.89 16 17 C -0.13 -2.26 6.34 -25.17 -0.16 -2.42 16 18 C 0.05 0.71 7.63 37.93 0.29 1.00 16 19 O -0.37 -6.40 10.92 -35.23 -0.38 -6.79 16 20 C 0.09 1.55 2.33 -25.96 -0.06 1.49 16 21 H 0.08 1.57 6.83 -51.93 -0.35 1.22 16 22 C -0.09 -1.34 2.60 -90.62 -0.24 -1.58 16 23 C -0.14 -1.84 9.10 37.15 0.34 -1.50 16 24 C -0.15 -2.17 8.60 37.16 0.32 -1.85 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.27 7.45 -51.92 -0.39 0.88 16 29 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 30 H 0.04 0.90 5.94 -51.93 -0.31 0.60 16 31 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.08 1.44 7.73 -51.93 -0.40 1.04 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.97 6.46 -51.93 -0.34 0.64 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -27.44 341.79 -7.18 -34.62 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.52 Total: 3.72 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.20 Total: -3.48 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.31 Total: -35.79 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.30 Total: -19.23 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.44 -7.18 -34.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331205345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.142 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds