Wall clock time and date at job start Mon Mar 30 2020 01:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47233 * 2 1 4 4 C 1.46497 * 120.00090 * 88.64342 * 3 2 1 5 5 C 1.50702 * 109.46759 * 90.00140 * 4 3 2 6 6 H 1.08000 * 120.00047 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99616 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00401 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99816 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47251 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47492 * 119.99782 * 9 7 5 12 12 H 1.48502 * 109.47078 * 239.99426 * 9 7 5 13 13 C 1.34777 * 119.99537 * 268.64945 * 3 2 1 14 14 O 1.21270 * 120.00622 * 4.72315 * 13 3 2 15 15 C 1.50710 * 119.99500 * 184.72915 * 13 3 2 16 16 H 1.09004 * 110.45246 * 325.88318 * 15 13 3 17 17 C 1.54503 * 110.51108 * 88.48887 * 15 13 3 18 18 C 1.54480 * 104.06202 * 118.64552 * 17 15 13 19 19 O 1.44425 * 104.80383 * 23.97831 * 18 17 15 20 20 C 1.44422 * 105.27455 * 319.48862 * 19 18 17 21 21 H 1.09003 * 110.37529 * 281.68129 * 20 19 18 22 22 C 1.52996 * 110.37357 * 159.34268 * 20 19 18 23 23 C 1.52994 * 109.47249 * 64.62019 * 22 20 19 24 24 C 1.53000 * 109.47222 * 184.62213 * 22 20 19 25 25 H 1.08998 * 109.47007 * 178.96520 * 1 2 3 26 26 H 1.08998 * 109.47051 * 298.96152 * 1 2 3 27 27 H 1.08992 * 109.47485 * 58.96615 * 1 2 3 28 28 H 1.09009 * 109.46934 * 240.00105 * 2 1 3 29 29 H 1.08998 * 109.47318 * 120.00517 * 2 1 3 30 30 H 1.09000 * 109.47135 * 210.00247 * 4 3 2 31 31 H 1.09001 * 109.46825 * 330.00302 * 4 3 2 32 32 H 0.97000 * 120.00527 * 180.02562 * 8 7 5 33 33 H 1.08998 * 110.51263 * 237.28790 * 17 15 13 34 34 H 1.09006 * 110.51432 * 359.97438 * 17 15 13 35 35 H 1.09002 * 110.37141 * 142.81089 * 18 17 15 36 36 H 1.09000 * 110.36995 * 265.03291 * 18 17 15 37 37 H 1.09004 * 109.47348 * 304.61771 * 22 20 19 38 38 H 1.09000 * 109.47544 * 179.97438 * 23 22 20 39 39 H 1.09005 * 109.46972 * 299.99740 * 23 22 20 40 40 H 1.09000 * 109.47538 * 59.99950 * 23 22 20 41 41 H 1.09001 * 109.47702 * 59.99679 * 24 22 20 42 42 H 1.09000 * 109.47183 * 180.02562 * 24 22 20 43 43 H 1.09005 * 109.47135 * 299.99474 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2342 2.0818 1.2683 5 6 3.6475 1.8486 1.7368 6 1 4.3176 1.2390 1.1488 7 6 4.0845 2.4125 2.9166 8 7 3.2683 3.1543 3.6330 9 14 5.8364 2.1239 3.4970 10 1 6.5461 1.2609 2.5188 11 1 6.5410 3.4262 3.6113 12 1 5.8149 1.4549 4.8226 13 6 2.2689 2.0073 -1.1669 14 8 2.0096 1.4591 -2.2171 15 6 2.8715 3.3887 -1.1666 16 1 2.5125 3.9607 -0.3110 17 6 4.4143 3.3063 -1.1540 18 6 4.8380 3.9994 -2.4680 19 8 3.7379 4.8766 -2.7938 20 6 2.5455 4.1217 -2.4867 21 1 2.3373 3.4024 -3.2788 22 6 1.3546 5.0625 -2.2935 23 6 1.0498 5.7769 -3.6116 24 6 0.1313 4.2538 -1.8570 25 1 -0.3633 -1.0275 -0.0186 26 1 -0.3633 0.4976 0.8991 27 1 -0.3634 0.5298 -0.8805 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0703 3.1500 1.1259 31 1 1.5366 1.7036 2.0156 32 1 3.5759 3.5513 4.4628 33 1 4.8182 3.8397 -0.2935 34 1 4.7413 2.2665 -1.1475 35 1 5.7506 4.5756 -2.3159 36 1 4.9833 3.2610 -3.2566 37 1 1.5946 5.8000 -1.5276 38 1 0.2010 6.4468 -3.4741 39 1 1.9213 6.3531 -3.9225 40 1 0.8097 5.0395 -4.3776 41 1 0.3484 3.7448 -0.9179 42 1 -0.7173 4.9240 -1.7197 43 1 -0.1089 3.5163 -2.6229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331205345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:30 Heat of formation + Delta-G solvation = -117.312176 kcal Electronic energy + Delta-G solvation = -22635.680905 eV Core-core repulsion = 19486.578709 eV Total energy + Delta-G solvation = -3149.102196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68828 -39.61734 -36.93851 -36.06667 -34.74221 -33.51738 -31.66162 -29.44877 -28.88045 -27.98283 -25.34903 -24.99920 -23.64863 -22.63307 -21.14258 -19.87997 -18.48704 -18.22428 -17.51784 -17.08418 -16.69041 -16.37371 -15.93721 -15.56364 -14.90100 -14.73942 -14.47884 -14.35649 -14.24001 -14.09239 -13.66417 -13.43842 -13.28315 -13.14674 -12.98884 -12.77524 -12.68021 -12.64958 -12.25237 -12.16536 -12.08246 -11.86784 -11.81353 -11.65614 -11.56893 -11.47455 -10.84811 -10.62769 -10.45684 -9.48340 -8.19441 -6.32657 1.39481 1.43715 1.52864 1.69769 2.25252 2.43099 2.86474 3.11510 3.58725 3.65205 3.79051 4.03412 4.05272 4.11089 4.20957 4.30805 4.35351 4.39289 4.45268 4.53211 4.68467 4.76132 4.78973 4.80249 4.85100 4.90667 4.95993 4.98365 5.03375 5.06921 5.12052 5.18003 5.21366 5.31535 5.36587 5.42827 5.66845 5.81748 5.86823 6.06207 6.55525 6.81597 7.28311 7.41050 8.86633 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.007592 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.242909 B = 3687.184885 C = 4516.414547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.597 5.597 4 C 0.253 3.747 5 C -0.534 4.534 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.529 3.471 14 O -0.589 6.589 15 C -0.131 4.131 16 H 0.095 0.905 17 C -0.126 4.126 18 C 0.049 3.951 19 O -0.378 6.378 20 C 0.097 3.903 21 H 0.072 0.928 22 C -0.090 4.090 23 C -0.134 4.134 24 C -0.139 4.139 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.020 0.980 32 H 0.267 0.733 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 1.583 -8.814 9.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.326 5.326 4 C 0.132 3.868 5 C -0.573 4.573 6 H 0.072 0.928 7 C -0.176 4.176 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.318 3.682 14 O -0.472 6.472 15 C -0.152 4.152 16 H 0.113 0.887 17 C -0.164 4.164 18 C -0.028 4.028 19 O -0.297 6.297 20 C 0.039 3.961 21 H 0.090 0.910 22 C -0.108 4.108 23 C -0.192 4.192 24 C -0.197 4.197 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.099 0.901 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.490 1.597 -9.238 9.700 hybrid contribution 0.926 -0.493 1.076 1.503 sum -1.564 1.104 -8.162 8.383 Atomic orbital electron populations 1.21999 0.94777 1.02975 1.01241 1.21424 0.95250 0.82521 1.02243 1.48258 1.62973 1.14303 1.07099 1.19099 0.95901 0.91998 0.79787 1.21607 0.97648 1.31463 1.06560 0.92757 1.25580 1.00993 0.94633 0.96440 1.70012 1.37027 1.33627 1.15269 0.85616 0.80476 0.78079 0.78210 1.19317 1.20400 1.20700 1.20307 0.77034 0.87870 0.82984 1.90548 1.55924 1.68715 1.31985 1.22593 0.97655 0.94145 1.00836 0.88707 1.22683 0.92443 1.01663 0.99611 1.23535 0.91193 0.93502 0.94553 1.89036 1.15134 1.38783 1.86730 1.22996 0.86707 0.92571 0.93811 0.91006 1.21166 0.92932 0.96933 0.99798 1.21704 1.02004 1.00171 0.95275 1.21758 0.97551 1.00049 1.00300 0.89479 0.93011 0.93667 0.91323 0.90493 0.95594 0.96168 0.92427 0.90096 0.91678 0.86664 0.91764 0.90741 0.90895 0.92331 0.92756 0.94686 0.90105 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.11 3.92 6.11 86.38 0.53 4.44 16 3 N -0.60 -24.82 2.46 -826.14 -2.03 -26.85 16 4 C 0.25 11.85 4.94 85.63 0.42 12.27 16 5 C -0.53 -26.75 9.00 25.60 0.23 -26.52 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.02 1.22 5.46 84.65 0.46 1.68 16 8 N -0.92 -49.67 13.29 21.45 0.28 -49.39 16 9 Si 0.95 40.80 29.54 68.60 2.03 42.83 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.53 21.74 5.39 87.66 0.47 22.22 16 14 O -0.59 -25.74 15.20 -3.00 -0.05 -25.78 16 15 C -0.13 -4.96 1.70 -10.52 -0.02 -4.98 16 16 H 0.09 3.88 5.55 -2.39 -0.01 3.87 16 17 C -0.13 -4.51 6.34 31.61 0.20 -4.31 16 18 C 0.05 1.45 7.63 72.49 0.55 2.01 16 19 O -0.38 -12.48 10.92 -148.98 -1.63 -14.11 16 20 C 0.10 3.30 2.33 31.10 0.07 3.37 16 21 H 0.07 2.65 6.83 -2.39 -0.02 2.63 16 22 C -0.09 -2.64 2.60 -10.80 -0.03 -2.67 16 23 C -0.13 -3.25 9.10 71.98 0.65 -2.60 16 24 C -0.14 -4.06 8.60 71.98 0.62 -3.44 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 2.49 7.45 -2.38 -0.02 2.47 16 29 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 30 H 0.03 1.29 5.94 -2.39 -0.01 1.27 16 31 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 32 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 33 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.06 2.46 7.73 -2.38 -0.02 2.44 16 35 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.44 7.85 -2.38 -0.02 1.42 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.03 1.16 6.46 -2.39 -0.02 1.15 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -57.36 341.79 4.48 -52.88 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.96 Total: 22.85 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.91 Total: -2.43 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.74 Total: -76.24 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.67 Total: -39.89 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -57.36 4.48 -52.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331205345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.432 kcal (2) G-P(sol) polarization free energy of solvation -57.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds