Wall clock time and date at job start Mon Mar 30 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47038 * 2 1 4 4 C 1.46500 * 119.99877 * 89.99592 * 3 2 1 5 5 C 1.50699 * 109.47154 * 90.00657 * 4 3 2 6 6 H 1.08003 * 119.99580 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00567 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00335 * 180.27037 * 7 5 4 10 10 H 1.48497 * 109.47262 * 269.72511 * 9 7 5 11 11 H 1.48496 * 109.47114 * 29.72582 * 9 7 5 12 12 H 1.48500 * 109.47282 * 149.72489 * 9 7 5 13 13 C 1.34780 * 120.00138 * 270.00208 * 3 2 1 14 14 O 1.21277 * 119.99907 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99730 * 359.97438 * 13 3 2 16 16 H 1.08997 * 110.46029 * 17.14266 * 15 13 3 17 17 C 1.54506 * 110.51172 * 254.53214 * 15 13 3 18 18 C 1.54474 * 104.06683 * 241.35571 * 17 15 13 19 19 O 1.44429 * 104.80092 * 23.98038 * 18 17 15 20 20 C 1.44423 * 105.27450 * 319.49007 * 19 18 17 21 21 H 1.09006 * 110.36957 * 281.67781 * 20 19 18 22 22 C 1.52995 * 110.37222 * 159.34756 * 20 19 18 23 23 C 1.52998 * 109.47471 * 67.71374 * 22 20 19 24 24 C 1.52999 * 109.47140 * 187.71919 * 22 20 19 25 25 H 1.09002 * 109.47360 * 60.00095 * 1 2 3 26 26 H 1.09005 * 109.46720 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47738 * 299.99750 * 1 2 3 28 28 H 1.08997 * 109.47738 * 240.00250 * 2 1 3 29 29 H 1.09002 * 109.47360 * 119.99905 * 2 1 3 30 30 H 1.09001 * 109.47317 * 330.00463 * 4 3 2 31 31 H 1.09003 * 109.47372 * 210.00030 * 4 3 2 32 32 H 0.96997 * 120.00300 * 180.02562 * 8 7 5 33 33 H 1.09007 * 110.51265 * 0.02562 * 17 15 13 34 34 H 1.09006 * 110.51262 * 122.70690 * 17 15 13 35 35 H 1.08999 * 110.37449 * 142.80515 * 18 17 15 36 36 H 1.08996 * 110.37585 * 265.03838 * 18 17 15 37 37 H 1.09005 * 109.47023 * 307.71268 * 22 20 19 38 38 H 1.09007 * 109.46693 * 60.00596 * 23 22 20 39 39 H 1.09005 * 109.46825 * 179.97438 * 23 22 20 40 40 H 1.09000 * 109.47523 * 300.00269 * 23 22 20 41 41 H 1.09006 * 109.47325 * 59.99131 * 24 22 20 42 42 H 1.08996 * 109.47425 * 179.97438 * 24 22 20 43 43 H 1.09007 * 109.47370 * 299.99615 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0719 1.2687 5 6 3.6856 1.8352 1.7038 6 1 4.3425 1.2305 1.0962 7 6 4.1493 2.3907 2.8775 8 7 3.3492 3.1267 3.6176 9 14 5.9157 2.1036 3.4129 10 1 5.9845 0.8856 4.2597 11 1 6.7729 1.9220 2.2140 12 1 6.3938 3.2748 4.1905 13 6 2.2429 2.0167 -1.1672 14 8 2.6467 3.1602 -1.1672 15 6 1.9922 1.3060 -2.4723 16 1 1.3635 0.4298 -2.3144 17 6 3.3286 0.9015 -3.1338 18 6 3.3282 1.6636 -4.4775 19 8 2.4472 2.7880 -4.2637 20 6 1.3425 2.2648 -3.4945 21 1 0.6541 1.7205 -4.1410 22 6 0.6123 3.3987 -2.7719 23 6 -0.0872 4.2911 -3.7991 24 6 -0.4271 2.8088 -1.8167 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5815 1.6877 2.0284 31 1 2.0954 3.1411 1.1384 32 1 3.6754 3.5178 4.4431 33 1 4.1706 1.2151 -2.5167 34 1 3.3597 -0.1745 -3.3051 35 1 4.3335 2.0097 -4.7178 36 1 2.9462 1.0265 -5.2751 37 1 1.3312 3.9910 -2.2057 38 1 -0.8061 3.6987 -4.3652 39 1 -0.6077 5.0986 -3.2842 40 1 0.6533 4.7113 -4.4796 41 1 0.0713 2.1730 -1.0849 42 1 -0.9470 3.6165 -1.3016 43 1 -1.1461 2.2164 -2.3828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331205347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:34 Heat of formation + Delta-G solvation = -83.443958 kcal Electronic energy + Delta-G solvation = -22737.743233 eV Core-core repulsion = 19590.109673 eV Total energy + Delta-G solvation = -3147.633560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55405 -37.96668 -35.34726 -34.74096 -32.91210 -31.89979 -30.11269 -28.48367 -27.01086 -26.87259 -23.94703 -23.02080 -22.47209 -21.21957 -20.19095 -17.99907 -17.01128 -16.38669 -16.04194 -15.85397 -15.25317 -14.89658 -14.51547 -14.12111 -13.51612 -13.45127 -13.18011 -12.97252 -12.83211 -12.29523 -12.07453 -12.04724 -11.94557 -11.61613 -11.50035 -11.32491 -11.11995 -11.02909 -10.91973 -10.81157 -10.58271 -10.51471 -10.33841 -10.16341 -10.10579 -9.58201 -9.57261 -8.64473 -8.42988 -7.58654 -6.03742 -4.08320 3.29615 3.34527 3.37278 3.42140 3.87509 4.06050 4.44720 4.70254 4.85829 4.97939 5.13410 5.19799 5.29388 5.30605 5.32055 5.43681 5.50069 5.54836 5.62585 5.69122 5.75625 5.80071 5.85852 5.87643 5.97971 6.04412 6.06602 6.16922 6.21555 6.23404 6.37908 6.47493 6.61005 6.81274 7.07487 7.11531 7.46410 7.57812 7.92978 8.24676 8.44718 8.91615 9.14226 9.56909 11.04213 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.006201 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.893281 B = 4514.347480 C = 4785.492784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.285 1.285 13 C 0.520 3.480 14 O -0.525 6.525 15 C -0.149 4.149 16 H 0.097 0.903 17 C -0.141 4.141 18 C 0.048 3.952 19 O -0.360 6.360 20 C 0.105 3.895 21 H 0.067 0.933 22 C -0.116 4.116 23 C -0.139 4.139 24 C -0.159 4.159 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.121 0.879 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 -7.057 -13.416 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.211 1.211 13 C 0.307 3.693 14 O -0.403 6.403 15 C -0.170 4.170 16 H 0.115 0.885 17 C -0.179 4.179 18 C -0.029 4.029 19 O -0.278 6.278 20 C 0.047 3.953 21 H 0.085 0.915 22 C -0.134 4.134 23 C -0.196 4.196 24 C -0.216 4.216 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.524 -6.107 -13.283 16.009 hybrid contribution 0.932 -0.615 0.533 1.237 sum -5.592 -6.722 -12.749 15.459 Atomic orbital electron populations 1.22420 0.96954 1.01595 1.02786 1.21425 0.93457 0.84526 1.02551 1.48299 1.63885 1.13135 1.07714 1.19244 0.96160 0.93624 0.78150 1.21431 0.96982 1.31789 1.06188 0.92583 1.24927 0.97778 0.94942 0.96438 1.69927 1.35682 1.33425 1.14339 0.86518 0.84820 0.77646 0.78566 1.20686 1.19943 1.21083 1.19783 0.78279 0.86771 0.84424 1.90588 1.45258 1.17696 1.86715 1.22916 0.98468 0.99898 0.95766 0.88467 1.22870 0.97391 1.00595 0.97028 1.23328 0.95383 0.88372 0.95812 1.89161 1.33799 1.31447 1.73412 1.22802 0.88614 0.93715 0.90140 0.91549 1.21637 0.98186 0.96770 0.96851 1.21752 0.99843 0.99240 0.98756 1.22135 0.98483 1.01560 0.99466 0.92240 0.92195 0.91891 0.91794 0.89972 0.95144 0.93884 0.92747 0.89850 0.90266 0.89192 0.92627 0.86173 0.93662 0.92926 0.92342 0.90718 0.92285 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.38 37.15 0.35 -1.99 16 2 C 0.10 1.65 5.72 -4.04 -0.02 1.62 16 3 N -0.60 -12.31 2.03 -175.06 -0.36 -12.66 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 5 C -0.52 -14.82 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 C 0.52 10.57 3.74 -10.98 -0.04 10.53 16 14 O -0.53 -13.02 13.57 5.56 0.08 -12.94 16 15 C -0.15 -2.29 2.17 -90.21 -0.20 -2.48 16 16 H 0.10 1.25 5.46 -51.93 -0.28 0.97 16 17 C -0.14 -1.96 6.72 -25.17 -0.17 -2.13 16 18 C 0.05 0.63 7.63 37.93 0.29 0.92 16 19 O -0.36 -5.92 11.05 -35.23 -0.39 -6.31 16 20 C 0.11 1.59 2.60 -25.96 -0.07 1.52 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.12 -1.88 2.16 -90.62 -0.20 -2.07 16 23 C -0.14 -1.90 9.12 37.16 0.34 -1.56 16 24 C -0.16 -2.36 8.09 37.16 0.30 -2.06 16 25 H 0.06 0.74 5.26 -51.93 -0.27 0.47 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.85 6.28 -51.93 -0.33 0.52 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.08 1.38 7.73 -51.93 -0.40 0.97 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.12 2.46 5.30 -51.93 -0.28 2.19 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 41 H 0.07 1.21 2.52 -51.93 -0.13 1.08 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -32.53 329.72 -6.95 -39.48 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.10 Total: 1.26 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 0.14 Total: -4.85 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.38 Total: -38.53 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.31 Total: -19.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.53 -6.95 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331205347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.966 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds