Wall clock time and date at job start Mon Mar 30 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47038 * 2 1 4 4 C 1.46500 * 119.99877 * 89.99592 * 3 2 1 5 5 C 1.50699 * 109.47154 * 90.00657 * 4 3 2 6 6 H 1.08003 * 119.99580 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00567 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00335 * 180.27037 * 7 5 4 10 10 H 1.48497 * 109.47262 * 269.72511 * 9 7 5 11 11 H 1.48496 * 109.47114 * 29.72582 * 9 7 5 12 12 H 1.48500 * 109.47282 * 149.72489 * 9 7 5 13 13 C 1.34780 * 120.00138 * 270.00208 * 3 2 1 14 14 O 1.21277 * 119.99907 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99730 * 359.97438 * 13 3 2 16 16 H 1.08997 * 110.46029 * 17.14266 * 15 13 3 17 17 C 1.54506 * 110.51172 * 254.53214 * 15 13 3 18 18 C 1.54474 * 104.06683 * 241.35571 * 17 15 13 19 19 O 1.44429 * 104.80092 * 23.98038 * 18 17 15 20 20 C 1.44423 * 105.27450 * 319.49007 * 19 18 17 21 21 H 1.09006 * 110.36957 * 281.67781 * 20 19 18 22 22 C 1.52995 * 110.37222 * 159.34756 * 20 19 18 23 23 C 1.52998 * 109.47471 * 67.71374 * 22 20 19 24 24 C 1.52999 * 109.47140 * 187.71919 * 22 20 19 25 25 H 1.09002 * 109.47360 * 60.00095 * 1 2 3 26 26 H 1.09005 * 109.46720 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47738 * 299.99750 * 1 2 3 28 28 H 1.08997 * 109.47738 * 240.00250 * 2 1 3 29 29 H 1.09002 * 109.47360 * 119.99905 * 2 1 3 30 30 H 1.09001 * 109.47317 * 330.00463 * 4 3 2 31 31 H 1.09003 * 109.47372 * 210.00030 * 4 3 2 32 32 H 0.96997 * 120.00300 * 180.02562 * 8 7 5 33 33 H 1.09007 * 110.51265 * 0.02562 * 17 15 13 34 34 H 1.09006 * 110.51262 * 122.70690 * 17 15 13 35 35 H 1.08999 * 110.37449 * 142.80515 * 18 17 15 36 36 H 1.08996 * 110.37585 * 265.03838 * 18 17 15 37 37 H 1.09005 * 109.47023 * 307.71268 * 22 20 19 38 38 H 1.09007 * 109.46693 * 60.00596 * 23 22 20 39 39 H 1.09005 * 109.46825 * 179.97438 * 23 22 20 40 40 H 1.09000 * 109.47523 * 300.00269 * 23 22 20 41 41 H 1.09006 * 109.47325 * 59.99131 * 24 22 20 42 42 H 1.08996 * 109.47425 * 179.97438 * 24 22 20 43 43 H 1.09007 * 109.47370 * 299.99615 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0719 1.2687 5 6 3.6856 1.8352 1.7038 6 1 4.3425 1.2305 1.0962 7 6 4.1493 2.3907 2.8775 8 7 3.3492 3.1267 3.6176 9 14 5.9157 2.1036 3.4129 10 1 5.9845 0.8856 4.2597 11 1 6.7729 1.9220 2.2140 12 1 6.3938 3.2748 4.1905 13 6 2.2429 2.0167 -1.1672 14 8 2.6467 3.1602 -1.1672 15 6 1.9922 1.3060 -2.4723 16 1 1.3635 0.4298 -2.3144 17 6 3.3286 0.9015 -3.1338 18 6 3.3282 1.6636 -4.4775 19 8 2.4472 2.7880 -4.2637 20 6 1.3425 2.2648 -3.4945 21 1 0.6541 1.7205 -4.1410 22 6 0.6123 3.3987 -2.7719 23 6 -0.0872 4.2911 -3.7991 24 6 -0.4271 2.8088 -1.8167 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5815 1.6877 2.0284 31 1 2.0954 3.1411 1.1384 32 1 3.6754 3.5178 4.4431 33 1 4.1706 1.2151 -2.5167 34 1 3.3597 -0.1745 -3.3051 35 1 4.3335 2.0097 -4.7178 36 1 2.9462 1.0265 -5.2751 37 1 1.3312 3.9910 -2.2057 38 1 -0.8061 3.6987 -4.3652 39 1 -0.6077 5.0986 -3.2842 40 1 0.6533 4.7113 -4.4796 41 1 0.0713 2.1730 -1.0849 42 1 -0.9470 3.6165 -1.3016 43 1 -1.1461 2.2164 -2.3828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331205347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:34 Heat of formation + Delta-G solvation = -104.809052 kcal Electronic energy + Delta-G solvation = -22738.669693 eV Core-core repulsion = 19590.109673 eV Total energy + Delta-G solvation = -3148.560020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90198 -39.36329 -36.95054 -35.95453 -34.96460 -33.21616 -31.59182 -29.72887 -28.78266 -28.02004 -25.62231 -24.46934 -23.73593 -22.50449 -21.47091 -19.50916 -18.61832 -18.28051 -17.38828 -17.16056 -16.66003 -16.43868 -16.00995 -15.68598 -14.81047 -14.72171 -14.50478 -14.35437 -14.15847 -13.81214 -13.60782 -13.30054 -13.20919 -13.08012 -13.02583 -12.71089 -12.66015 -12.49714 -12.31820 -12.24821 -12.07513 -11.99414 -11.79721 -11.64769 -11.47198 -11.35346 -10.67316 -10.64972 -10.23686 -9.31821 -8.23113 -6.38159 1.33407 1.36869 1.46794 1.84779 2.28992 2.44083 2.95967 3.05800 3.48665 3.66566 3.83053 4.05993 4.08330 4.14307 4.22547 4.31408 4.38334 4.41354 4.46480 4.59440 4.70198 4.74753 4.79696 4.85267 4.86442 4.91628 4.96881 4.99458 5.04553 5.08838 5.10034 5.21856 5.27328 5.39228 5.47317 5.54505 5.61935 5.89705 6.01734 6.07189 6.70310 6.85708 7.28639 7.57697 8.83409 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.006201 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.893281 B = 4514.347480 C = 4785.492784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.604 5.604 4 C 0.266 3.734 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.282 1.282 13 C 0.515 3.485 14 O -0.583 6.583 15 C -0.141 4.141 16 H 0.133 0.867 17 C -0.140 4.140 18 C 0.045 3.955 19 O -0.392 6.392 20 C 0.106 3.894 21 H 0.108 0.892 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.038 0.962 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.019 0.981 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.045 0.955 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 -10.055 -15.518 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.335 5.335 4 C 0.145 3.855 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.207 1.207 13 C 0.305 3.695 14 O -0.463 6.463 15 C -0.163 4.163 16 H 0.151 0.849 17 C -0.178 4.178 18 C -0.031 4.031 19 O -0.312 6.312 20 C 0.048 3.952 21 H 0.126 0.874 22 C -0.140 4.140 23 C -0.189 4.189 24 C -0.213 4.213 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.110 -9.154 -15.398 19.273 hybrid contribution 1.093 0.360 1.188 1.654 sum -6.017 -8.794 -14.210 17.761 Atomic orbital electron populations 1.22350 0.94555 1.03771 1.02201 1.21769 0.95427 0.81660 1.03739 1.48287 1.64159 1.14955 1.06092 1.18613 0.95000 0.91348 0.80560 1.21716 0.98019 1.31827 1.06408 0.93082 1.25852 1.02323 0.94509 0.96499 1.70052 1.37772 1.34225 1.14806 0.85442 0.79108 0.78247 0.78181 1.18613 1.19930 1.20699 1.20729 0.76744 0.86221 0.85848 1.90582 1.47633 1.20459 1.87670 1.22979 1.00196 1.00563 0.92520 0.84900 1.22943 0.94911 1.03268 0.96692 1.23567 0.95363 0.87913 0.96283 1.89138 1.34849 1.33578 1.73596 1.22966 0.88801 0.93115 0.90275 0.87412 1.21555 0.97755 0.97375 0.97321 1.21684 0.99886 0.99214 0.98092 1.22109 0.98627 1.01382 0.99220 0.91134 0.88478 0.94261 0.88224 0.91139 0.96287 0.98856 0.92461 0.93589 0.85968 0.89207 0.88574 0.91602 0.90704 0.93083 0.93397 0.92308 0.93409 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 9.38 71.98 0.67 -3.37 16 2 C 0.10 2.88 5.72 86.38 0.49 3.37 16 3 N -0.60 -25.44 2.03 -826.16 -1.68 -27.11 16 4 C 0.27 14.58 5.16 85.63 0.44 15.02 16 5 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 9 Si 0.97 45.75 29.54 68.60 2.03 47.77 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 C 0.51 21.38 3.74 87.66 0.33 21.71 16 14 O -0.58 -30.89 13.57 -3.02 -0.04 -30.93 16 15 C -0.14 -4.01 2.17 -10.53 -0.02 -4.04 16 16 H 0.13 2.77 5.46 -2.39 -0.01 2.76 16 17 C -0.14 -3.53 6.72 31.61 0.21 -3.32 16 18 C 0.05 1.05 7.63 72.48 0.55 1.60 16 19 O -0.39 -12.36 11.05 -148.98 -1.65 -14.00 16 20 C 0.11 2.93 2.60 31.09 0.08 3.01 16 21 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 22 C -0.12 -3.89 2.16 -10.80 -0.02 -3.92 16 23 C -0.13 -3.46 9.12 71.98 0.66 -2.80 16 24 C -0.16 -4.47 8.09 71.98 0.58 -3.89 16 25 H 0.07 1.52 5.26 -2.39 -0.01 1.51 16 26 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 2.26 6.28 -2.39 -0.01 2.24 16 29 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 30 H 0.02 1.06 8.07 -2.39 -0.02 1.05 16 31 H -0.01 -0.43 7.42 -2.39 -0.02 -0.44 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.05 1.50 7.73 -2.38 -0.02 1.48 16 34 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 2.89 5.30 -2.38 -0.01 2.87 16 38 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 40 H 0.05 1.34 7.95 -2.39 -0.02 1.32 16 41 H 0.06 1.87 2.52 -2.38 -0.01 1.87 16 42 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -77.76 329.72 4.61 -73.15 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.98 Total: 15.33 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.68 Total: -7.27 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.39 Total: -84.05 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.69 Total: -44.93 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -77.76 4.61 -73.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331205347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.657 kcal (2) G-P(sol) polarization free energy of solvation -77.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds