Wall clock time and date at job start Mon Mar 30 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47059 * 2 1 4 4 C 1.46497 * 120.00165 * 274.53961 * 3 2 1 5 5 C 1.50704 * 109.47281 * 275.87102 * 4 3 2 6 6 H 1.07996 * 119.99537 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99707 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00758 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99727 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47006 * 89.99805 * 9 7 5 11 11 H 1.48495 * 109.47359 * 210.00044 * 9 7 5 12 12 H 1.48504 * 109.46908 * 330.00219 * 9 7 5 13 13 C 1.34770 * 119.99918 * 94.54258 * 3 2 1 14 14 O 1.21286 * 120.00089 * 4.55223 * 13 3 2 15 15 C 1.50701 * 119.99995 * 184.55552 * 13 3 2 16 16 H 1.08994 * 109.47082 * 44.45100 * 15 13 3 17 17 O 1.42904 * 109.47143 * 164.44691 * 15 13 3 18 18 C 1.53002 * 109.46994 * 284.44648 * 15 13 3 19 19 C 1.52998 * 109.47113 * 297.85166 * 18 15 13 20 20 C 1.52999 * 109.46766 * 180.02562 * 19 18 15 21 21 C 1.53000 * 109.47667 * 60.00190 * 20 19 18 22 22 C 1.53008 * 109.46626 * 300.00248 * 21 20 19 23 23 C 1.52997 * 109.46820 * 177.85138 * 18 15 13 24 24 H 1.09000 * 109.46696 * 304.99096 * 1 2 3 25 25 H 1.08994 * 109.47362 * 64.99166 * 1 2 3 26 26 H 1.08997 * 109.47152 * 184.99469 * 1 2 3 27 27 H 1.08999 * 109.46894 * 240.00341 * 2 1 3 28 28 H 1.08995 * 109.47440 * 120.00351 * 2 1 3 29 29 H 1.09004 * 109.47178 * 35.86367 * 4 3 2 30 30 H 1.09001 * 109.47227 * 155.86772 * 4 3 2 31 31 H 0.96998 * 120.00153 * 180.02562 * 8 7 5 32 32 H 0.96705 * 113.99892 * 60.00279 * 17 15 13 33 33 H 1.08998 * 109.47045 * 57.85155 * 18 15 13 34 34 H 1.09001 * 109.47152 * 299.99393 * 19 18 15 35 35 H 1.08996 * 109.47541 * 60.00082 * 19 18 15 36 36 H 1.08998 * 109.47170 * 299.99852 * 20 19 18 37 37 H 1.09006 * 109.47258 * 179.97438 * 20 19 18 38 38 H 1.08992 * 109.47868 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.47011 * 59.99430 * 21 20 19 40 40 H 1.09007 * 109.46758 * 299.99337 * 22 21 20 41 41 H 1.09000 * 109.46605 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.47412 * 299.99676 * 23 18 15 43 43 H 1.09001 * 109.47730 * 60.00432 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1679 2.1053 -1.2647 5 6 3.5001 1.7673 -1.8827 6 1 4.1687 1.0819 -1.3831 7 6 3.8657 2.3338 -3.0854 8 7 3.0518 3.1687 -3.6935 9 14 5.5175 1.9153 -3.8511 10 1 5.3669 0.7332 -4.7373 11 1 6.0016 3.0719 -4.6466 12 1 6.4968 1.6078 -2.7779 13 6 2.3301 1.9857 1.1635 14 8 2.2856 1.3613 2.2023 15 6 2.7340 3.4376 1.1738 16 1 2.0603 4.0066 0.5332 17 8 2.6619 3.9426 2.5086 18 6 4.1669 3.5720 0.6543 19 6 5.1193 2.8174 1.5840 20 6 6.5521 2.9525 1.0649 21 6 6.9432 4.4311 1.0253 22 6 5.9906 5.1857 0.0956 23 6 4.5581 5.0506 0.6143 24 1 -0.3633 0.5893 0.8419 25 1 -0.3634 0.4344 -0.9312 26 1 -0.3633 -1.0237 0.0895 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3676 1.8160 -1.9459 30 1 2.1158 3.1779 -1.0777 31 1 3.3089 3.5669 -4.5398 32 1 3.2369 3.4821 3.1350 33 1 4.2303 3.1520 -0.3495 34 1 5.0559 3.2375 2.5879 35 1 4.8406 1.7641 1.6126 36 1 6.6159 2.5328 0.0610 37 1 7.2308 2.4153 1.7275 38 1 7.9640 4.5273 0.6559 39 1 6.8793 4.8509 2.0293 40 1 6.0544 4.7660 -0.9084 41 1 6.2689 6.2392 0.0677 42 1 3.8796 5.5882 -0.0482 43 1 4.4947 5.4706 1.6181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331248486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:46 Heat of formation + Delta-G solvation = -121.444184 kcal Electronic energy + Delta-G solvation = -22909.761814 eV Core-core repulsion = 19760.480441 eV Total energy + Delta-G solvation = -3149.281373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.94819 -37.82289 -35.84622 -34.99381 -32.86227 -31.37452 -30.34267 -30.04218 -27.24704 -26.15258 -23.15971 -22.67568 -22.16377 -21.05904 -19.15935 -18.60009 -16.85880 -16.53520 -16.22189 -15.45603 -14.79473 -14.68189 -14.42580 -13.86416 -13.76616 -13.47864 -13.36416 -12.80970 -12.51814 -12.31633 -12.08043 -11.84021 -11.72506 -11.64999 -11.52246 -11.21657 -11.03860 -10.88215 -10.76818 -10.63481 -10.48713 -10.39048 -10.19746 -9.87208 -9.81302 -9.71431 -9.49368 -8.75633 -8.55301 -7.76130 -6.26209 -4.32532 3.16662 3.24937 3.25796 3.33246 3.88472 4.26405 4.84820 5.05608 5.08241 5.11363 5.13959 5.32964 5.56023 5.64440 5.68998 5.76925 5.81509 5.87523 5.88502 5.94472 5.96949 6.07360 6.13715 6.26495 6.29563 6.38535 6.41172 6.56085 6.57436 6.62990 6.66250 6.70156 6.74576 6.80900 7.09563 7.19580 7.47916 7.68554 7.96659 7.97338 8.30663 8.71137 8.94832 9.33728 10.79903 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.011356 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.614483 B = 2465.016592 C = 4066.659399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.591 5.591 4 C 0.233 3.767 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.491 3.509 14 O -0.573 6.573 15 C 0.101 3.899 16 H 0.118 0.882 17 O -0.549 6.549 18 C -0.133 4.133 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.101 4.101 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.374 0.626 33 H 0.137 0.863 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 1.039 5.765 6.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.113 3.887 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.279 3.721 14 O -0.455 6.455 15 C 0.039 3.961 16 H 0.136 0.864 17 O -0.354 6.354 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.139 4.139 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.155 0.845 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.402 1.250 5.842 6.439 hybrid contribution 1.219 -0.608 -0.528 1.461 sum 3.621 0.642 5.313 6.462 Atomic orbital electron populations 1.22103 0.96867 1.01195 1.01920 1.21240 0.93365 0.84022 1.02535 1.48261 1.62355 1.13587 1.08025 1.19519 0.97475 0.92304 0.79402 1.21387 1.02348 1.27909 1.05710 0.91880 1.24904 0.97250 0.94670 0.96569 1.69910 1.36165 1.29205 1.16983 0.86626 0.83970 0.78194 0.79599 1.20511 1.20949 1.19479 1.21372 0.76799 0.90313 0.83604 1.90578 1.55786 1.66590 1.32553 1.21877 0.98390 0.91317 0.84476 0.86416 1.86503 1.69495 1.60672 1.18750 1.22182 0.91784 0.96744 1.04428 1.21483 0.94957 1.00269 0.98132 1.21479 0.96115 0.96148 1.01644 1.21511 0.98441 0.95824 0.99543 1.21511 0.95149 0.99258 0.99725 1.21387 0.95938 0.95761 1.00812 0.93016 0.92476 0.92437 0.90481 0.90973 0.94713 0.94155 0.92391 0.77703 0.84544 0.92899 0.92044 0.91496 0.92767 0.92743 0.92514 0.91560 0.92663 0.91998 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.11 2.07 6.23 -4.04 -0.03 2.04 16 3 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 4 C 0.23 5.25 4.70 -5.19 -0.02 5.23 16 5 C -0.54 -12.92 6.89 -34.44 -0.24 -13.16 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -23.08 13.29 55.43 0.74 -22.34 16 9 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.49 10.18 5.85 -10.99 -0.06 10.12 16 14 O -0.57 -12.86 15.72 -13.86 -0.22 -13.08 16 15 C 0.10 1.91 2.33 -27.88 -0.06 1.84 16 16 H 0.12 2.26 6.73 -51.93 -0.35 1.91 16 17 O -0.55 -9.85 12.43 -54.64 -0.68 -10.53 16 18 C -0.13 -2.38 1.83 -90.62 -0.17 -2.55 16 19 C -0.11 -1.84 4.63 -26.73 -0.12 -1.97 16 20 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 21 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 22 C -0.12 -1.79 5.92 -26.75 -0.16 -1.95 16 23 C -0.10 -1.64 5.07 -26.76 -0.14 -1.78 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.41 8.11 -51.93 -0.42 0.98 16 28 H 0.07 1.35 7.24 -51.93 -0.38 0.97 16 29 H 0.03 0.83 8.12 -51.93 -0.42 0.41 16 30 H 0.04 0.94 5.62 -51.93 -0.29 0.65 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.37 6.06 6.90 45.56 0.31 6.37 16 33 H 0.14 2.86 4.49 -51.93 -0.23 2.63 16 34 H 0.05 0.80 6.75 -51.93 -0.35 0.45 16 35 H 0.06 1.14 7.22 -51.93 -0.37 0.77 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.90 7.74 -51.93 -0.40 0.50 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -26.62 332.21 -8.32 -34.94 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.68 Total: 10.52 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.03 Total: -6.46 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.31 Total: -34.97 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.90 Total: -23.61 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.62 -8.32 -34.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331248486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.509 kcal (2) G-P(sol) polarization free energy of solvation -26.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds