Wall clock time and date at job start Mon Mar 30 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47059 * 2 1 4 4 C 1.46497 * 120.00165 * 274.53961 * 3 2 1 5 5 C 1.50704 * 109.47281 * 275.87102 * 4 3 2 6 6 H 1.07996 * 119.99537 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99707 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00758 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99727 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47006 * 89.99805 * 9 7 5 11 11 H 1.48495 * 109.47359 * 210.00044 * 9 7 5 12 12 H 1.48504 * 109.46908 * 330.00219 * 9 7 5 13 13 C 1.34770 * 119.99918 * 94.54258 * 3 2 1 14 14 O 1.21286 * 120.00089 * 4.55223 * 13 3 2 15 15 C 1.50701 * 119.99995 * 184.55552 * 13 3 2 16 16 H 1.08994 * 109.47082 * 44.45100 * 15 13 3 17 17 O 1.42904 * 109.47143 * 164.44691 * 15 13 3 18 18 C 1.53002 * 109.46994 * 284.44648 * 15 13 3 19 19 C 1.52998 * 109.47113 * 297.85166 * 18 15 13 20 20 C 1.52999 * 109.46766 * 180.02562 * 19 18 15 21 21 C 1.53000 * 109.47667 * 60.00190 * 20 19 18 22 22 C 1.53008 * 109.46626 * 300.00248 * 21 20 19 23 23 C 1.52997 * 109.46820 * 177.85138 * 18 15 13 24 24 H 1.09000 * 109.46696 * 304.99096 * 1 2 3 25 25 H 1.08994 * 109.47362 * 64.99166 * 1 2 3 26 26 H 1.08997 * 109.47152 * 184.99469 * 1 2 3 27 27 H 1.08999 * 109.46894 * 240.00341 * 2 1 3 28 28 H 1.08995 * 109.47440 * 120.00351 * 2 1 3 29 29 H 1.09004 * 109.47178 * 35.86367 * 4 3 2 30 30 H 1.09001 * 109.47227 * 155.86772 * 4 3 2 31 31 H 0.96998 * 120.00153 * 180.02562 * 8 7 5 32 32 H 0.96705 * 113.99892 * 60.00279 * 17 15 13 33 33 H 1.08998 * 109.47045 * 57.85155 * 18 15 13 34 34 H 1.09001 * 109.47152 * 299.99393 * 19 18 15 35 35 H 1.08996 * 109.47541 * 60.00082 * 19 18 15 36 36 H 1.08998 * 109.47170 * 299.99852 * 20 19 18 37 37 H 1.09006 * 109.47258 * 179.97438 * 20 19 18 38 38 H 1.08992 * 109.47868 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.47011 * 59.99430 * 21 20 19 40 40 H 1.09007 * 109.46758 * 299.99337 * 22 21 20 41 41 H 1.09000 * 109.46605 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.47412 * 299.99676 * 23 18 15 43 43 H 1.09001 * 109.47730 * 60.00432 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1679 2.1053 -1.2647 5 6 3.5001 1.7673 -1.8827 6 1 4.1687 1.0819 -1.3831 7 6 3.8657 2.3338 -3.0854 8 7 3.0518 3.1687 -3.6935 9 14 5.5175 1.9153 -3.8511 10 1 5.3669 0.7332 -4.7373 11 1 6.0016 3.0719 -4.6466 12 1 6.4968 1.6078 -2.7779 13 6 2.3301 1.9857 1.1635 14 8 2.2856 1.3613 2.2023 15 6 2.7340 3.4376 1.1738 16 1 2.0603 4.0066 0.5332 17 8 2.6619 3.9426 2.5086 18 6 4.1669 3.5720 0.6543 19 6 5.1193 2.8174 1.5840 20 6 6.5521 2.9525 1.0649 21 6 6.9432 4.4311 1.0253 22 6 5.9906 5.1857 0.0956 23 6 4.5581 5.0506 0.6143 24 1 -0.3633 0.5893 0.8419 25 1 -0.3634 0.4344 -0.9312 26 1 -0.3633 -1.0237 0.0895 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3676 1.8160 -1.9459 30 1 2.1158 3.1779 -1.0777 31 1 3.3089 3.5669 -4.5398 32 1 3.2369 3.4821 3.1350 33 1 4.2303 3.1520 -0.3495 34 1 5.0559 3.2375 2.5879 35 1 4.8406 1.7641 1.6126 36 1 6.6159 2.5328 0.0610 37 1 7.2308 2.4153 1.7275 38 1 7.9640 4.5273 0.6559 39 1 6.8793 4.8509 2.0293 40 1 6.0544 4.7660 -0.9084 41 1 6.2689 6.2392 0.0677 42 1 3.8796 5.5882 -0.0482 43 1 4.4947 5.4706 1.6181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331248486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:46 Heat of formation + Delta-G solvation = -135.532362 kcal Electronic energy + Delta-G solvation = -22910.372723 eV Core-core repulsion = 19760.480441 eV Total energy + Delta-G solvation = -3149.892282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52373 -39.25985 -37.37834 -36.60705 -34.71653 -32.84488 -31.62551 -31.46836 -29.09300 -27.59948 -25.00320 -24.11617 -23.48055 -22.40767 -20.48019 -20.22006 -18.60579 -18.32148 -17.79649 -17.00065 -16.41408 -16.28018 -15.97752 -15.22468 -15.10735 -14.91570 -14.72234 -14.37760 -14.25415 -13.73411 -13.64423 -13.35227 -13.18244 -13.09619 -12.97477 -12.73721 -12.72265 -12.61294 -12.17968 -12.07051 -11.94456 -11.83707 -11.73064 -11.62585 -11.20004 -11.15048 -10.83265 -10.60329 -10.22680 -9.48996 -8.19355 -6.30263 1.39492 1.43588 1.50885 1.65493 2.25099 2.43460 3.10462 3.40281 3.60531 3.76073 3.84504 3.95464 4.20694 4.24168 4.36177 4.41571 4.47188 4.52616 4.55675 4.67493 4.72310 4.74734 4.82028 4.84214 4.94488 5.03291 5.04119 5.15234 5.16152 5.29610 5.30178 5.34690 5.41020 5.44545 5.49452 5.66645 5.74033 5.82905 6.05825 6.50679 6.62045 6.80855 7.24267 7.40139 8.86282 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.011356 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.614483 B = 2465.016592 C = 4066.659399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.249 3.751 5 C -0.531 4.531 6 H 0.053 0.947 7 C 0.033 3.967 8 N -0.913 5.913 9 Si 0.940 3.060 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.488 3.512 14 O -0.591 6.591 15 C 0.107 3.893 16 H 0.111 0.889 17 O -0.547 6.547 18 C -0.128 4.128 19 C -0.106 4.106 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.098 4.098 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.033 0.967 31 H 0.267 0.733 32 H 0.383 0.617 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 1.336 6.613 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.569 4.569 6 H 0.071 0.929 7 C -0.168 4.168 8 N -0.552 5.552 9 Si 0.766 3.234 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.277 3.723 14 O -0.474 6.474 15 C 0.045 3.955 16 H 0.128 0.872 17 O -0.354 6.354 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.135 4.135 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.233 0.767 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.499 1.531 6.697 7.709 hybrid contribution 0.841 -0.733 -0.752 1.345 sum 4.340 0.798 5.945 7.404 Atomic orbital electron populations 1.22012 0.94759 1.02964 1.01286 1.21413 0.95118 0.82838 1.02364 1.48291 1.62408 1.14381 1.07432 1.19194 0.96273 0.91969 0.79776 1.21426 1.02594 1.27269 1.05613 0.92872 1.25455 0.99738 0.94606 0.96990 1.69987 1.37580 1.30224 1.17407 0.85824 0.80935 0.77885 0.78805 1.20394 1.20700 1.19164 1.21716 0.76310 0.91075 0.83221 1.90557 1.56629 1.67275 1.32932 1.21776 0.98846 0.89880 0.84986 0.87173 1.86487 1.69887 1.60587 1.18411 1.22041 0.91567 0.98152 1.02887 1.21431 0.95472 0.98529 0.98872 1.21477 0.95594 0.97699 1.00533 1.21497 0.98791 0.94204 1.00283 1.21515 0.94707 1.00695 0.98695 1.21361 0.96580 0.94129 1.01435 0.93956 0.92767 0.89397 0.90498 0.91211 0.96230 0.94941 0.92341 0.76672 0.87665 0.90906 0.94560 0.93988 0.90843 0.91130 0.90605 0.93961 0.90511 0.93130 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 10.24 71.98 0.74 -4.02 16 2 C 0.11 3.88 6.23 86.38 0.54 4.42 16 3 N -0.59 -24.84 2.46 -826.14 -2.03 -26.88 16 4 C 0.25 11.46 4.70 85.63 0.40 11.87 16 5 C -0.53 -26.04 6.89 25.60 0.18 -25.86 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.03 1.67 5.46 84.65 0.46 2.13 16 8 N -0.91 -48.14 13.29 21.45 0.28 -47.86 16 9 Si 0.94 40.26 29.54 68.60 2.03 42.29 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 13 C 0.49 20.33 5.85 87.66 0.51 20.84 16 14 O -0.59 -26.38 15.72 15.51 0.24 -26.14 16 15 C 0.11 4.03 2.33 29.85 0.07 4.09 16 16 H 0.11 4.30 6.73 -2.39 -0.02 4.29 16 17 O -0.55 -18.96 12.43 -130.42 -1.62 -20.59 16 18 C -0.13 -4.54 1.83 -10.79 -0.02 -4.56 16 19 C -0.11 -3.40 4.63 30.59 0.14 -3.25 16 20 C -0.12 -3.35 5.92 30.59 0.18 -3.17 16 21 C -0.11 -2.74 5.92 30.60 0.18 -2.56 16 22 C -0.12 -3.36 5.92 30.58 0.18 -3.18 16 23 C -0.10 -3.04 5.07 30.58 0.16 -2.88 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 28 H 0.07 2.60 7.24 -2.39 -0.02 2.58 16 29 H 0.02 0.96 8.12 -2.39 -0.02 0.94 16 30 H 0.03 1.56 5.62 -2.39 -0.01 1.54 16 31 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 32 H 0.38 11.75 6.90 -74.05 -0.51 11.24 16 33 H 0.11 4.50 4.49 -2.39 -0.01 4.49 16 34 H 0.07 2.04 6.75 -2.39 -0.02 2.02 16 35 H 0.04 1.33 7.22 -2.39 -0.02 1.32 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.07 2.08 7.74 -2.39 -0.02 2.06 16 Total: -1.00 -56.12 332.21 3.10 -53.03 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.47 Total: 32.27 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 3.72 Total: -6.12 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -1.75 Total: -74.73 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -1.38 Total: -46.72 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -56.12 3.10 -53.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331248486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.507 kcal (2) G-P(sol) polarization free energy of solvation -56.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds