Wall clock time and date at job start Mon Mar 30 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46833 * 2 1 4 4 O 1.42897 * 109.47204 * 119.99944 * 2 1 3 5 5 C 1.42903 * 114.00123 * 270.00018 * 4 2 1 6 6 C 1.54239 * 108.89580 * 271.39815 * 5 4 2 7 7 C 1.50562 * 108.48564 * 159.17609 * 6 5 4 8 8 C 1.54068 * 112.41500 * 94.26448 * 7 6 5 9 9 C 1.54069 * 112.81208 * 318.28244 * 8 7 6 10 10 C 1.50473 * 112.50192 * 318.28028 * 9 8 7 11 11 C 1.45536 * 108.89932 * 148.60415 * 5 4 2 12 12 C 1.50696 * 109.47092 * 240.00090 * 2 1 3 13 13 O 1.21284 * 120.00109 * 244.99821 * 12 2 1 14 14 N 1.34777 * 120.00137 * 65.00036 * 12 2 1 15 15 C 1.46506 * 119.99873 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.46928 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99963 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99865 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00518 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46948 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47174 * 120.00320 * 20 18 16 23 23 H 1.48497 * 109.47378 * 240.00235 * 20 18 16 24 24 H 1.08998 * 109.46817 * 60.00276 * 1 2 3 25 25 H 1.09001 * 109.46504 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46983 * 299.99621 * 1 2 3 27 27 H 1.09006 * 108.87364 * 29.99914 * 5 4 2 28 28 H 1.08997 * 109.63097 * 278.97322 * 6 5 4 29 29 H 1.09002 * 109.62960 * 39.55080 * 6 5 4 30 30 H 1.08997 * 108.91865 * 333.51063 * 7 6 5 31 31 H 1.08996 * 108.91877 * 215.01634 * 7 6 5 32 32 H 1.08996 * 108.81369 * 197.42142 * 8 7 6 33 33 H 1.09000 * 108.72552 * 79.07831 * 8 7 6 34 34 H 1.09011 * 108.87121 * 197.50649 * 9 8 7 35 35 H 1.08997 * 108.88179 * 79.06818 * 9 8 7 36 36 H 1.09009 * 109.62497 * 334.45108 * 10 9 8 37 37 H 1.08997 * 109.63223 * 213.86915 * 10 9 8 38 38 H 1.08998 * 108.89382 * 303.44687 * 11 5 4 39 39 H 1.09000 * 108.89364 * 62.03124 * 11 5 4 40 40 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 41 41 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 42 42 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 43 43 H 0.96992 * 120.00316 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 0.1830 2.2941 6 6 3.6324 0.7534 2.2477 7 6 3.6765 2.0018 3.0882 8 6 4.1430 1.7232 4.5299 9 6 3.5262 0.4406 5.1199 10 6 2.0678 0.2937 4.7798 11 6 1.9457 -0.5742 3.5107 12 6 2.0324 -0.7104 -1.2304 13 8 2.6530 -1.7466 -1.1215 14 7 1.7919 -0.1941 -2.4520 15 6 2.2798 -0.8851 -3.6482 16 6 1.8807 -0.1071 -4.8756 17 1 1.3201 0.8106 -4.7746 18 6 2.2322 -0.5661 -6.1272 19 7 2.9152 -1.6832 -6.2502 20 14 1.7368 0.3979 -7.6487 21 1 0.9797 1.6091 -7.2424 22 1 2.9544 0.8033 -8.3960 23 1 0.8831 -0.4519 -8.5171 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.4897 1.0077 2.2365 28 1 4.3325 0.0181 2.6443 29 1 3.8966 0.9965 1.2185 30 1 2.6802 2.4426 3.1188 31 1 4.3611 2.7140 2.6275 32 1 3.8647 2.5687 5.1589 33 1 5.2286 1.6251 4.5336 34 1 3.6349 0.4637 6.2043 35 1 4.0675 -0.4221 4.7316 36 1 1.6343 1.2766 4.5944 37 1 1.5461 -0.1898 5.6057 38 1 0.9395 -0.9906 3.4633 39 1 2.6632 -1.3923 3.5738 40 1 1.2952 0.6345 -2.5392 41 1 3.3662 -0.9637 -3.6047 42 1 1.8448 -1.8835 -3.6939 43 1 3.1621 -2.0063 -7.1307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332001309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:54 Heat of formation + Delta-G solvation = -113.815969 kcal Electronic energy + Delta-G solvation = -21113.049136 eV Core-core repulsion = 17964.098547 eV Total energy + Delta-G solvation = -3148.950589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93239 -38.66566 -36.59357 -34.14657 -32.64190 -32.36146 -31.87151 -30.26259 -27.20604 -25.23020 -24.53804 -23.78754 -22.10323 -20.83185 -19.60850 -19.45148 -17.35924 -17.13940 -16.01692 -15.58811 -15.27419 -14.92144 -14.80603 -14.46897 -14.20760 -13.76229 -13.36599 -13.20832 -12.94630 -12.86961 -12.44698 -12.29428 -12.18712 -11.97595 -11.71738 -11.47553 -11.25840 -11.09953 -10.95511 -10.89177 -10.78507 -10.55814 -10.49738 -10.47370 -10.30360 -9.52775 -9.37629 -8.81092 -8.73559 -7.86950 -6.16262 -4.23312 3.23518 3.29587 3.32709 3.36330 3.41276 4.22523 4.37294 4.49453 4.60477 4.71666 4.90669 4.94849 5.05685 5.07557 5.12971 5.15888 5.19721 5.27384 5.33434 5.42153 5.54672 5.59281 5.65323 5.80877 5.82000 5.89670 5.95094 5.98017 5.98961 6.04868 6.14530 6.20515 6.22864 6.31086 7.22683 7.36142 7.46544 7.52976 7.68735 7.97319 8.62994 8.79527 9.12019 9.43402 10.94007 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037524 B = 0.003337 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.005285 B = 8390.003957 C = 8532.390591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 H 0.079 0.921 4 O -0.352 6.352 5 C 0.094 3.906 6 C -0.141 4.141 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.110 4.110 11 C -0.122 4.122 12 C 0.499 3.501 13 O -0.535 6.535 14 N -0.711 5.711 15 C 0.251 3.749 16 C -0.542 4.542 17 H 0.064 0.936 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 8.768 21.039 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 H 0.097 0.903 4 O -0.271 6.271 5 C 0.036 3.964 6 C -0.179 4.179 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.148 4.148 11 C -0.159 4.159 12 C 0.282 3.718 13 O -0.412 6.412 14 N -0.362 5.362 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.222 0.778 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.135 7.672 20.964 22.425 hybrid contribution -0.465 1.130 -1.010 1.585 sum -2.600 8.802 19.954 21.963 Atomic orbital electron populations 1.22220 0.94146 1.03658 1.02543 1.21986 0.94641 0.96212 0.86357 0.90312 1.88130 1.86250 1.33964 1.18718 1.21062 0.95605 0.92868 0.86840 1.21898 0.97700 0.97700 1.00593 1.21306 1.01575 0.97640 0.95024 1.21917 1.00254 0.97506 0.95742 1.21387 0.96067 0.98428 1.00115 1.21232 0.96732 1.00061 0.96740 1.20534 1.03107 0.99269 0.93028 1.20224 0.81027 0.86049 0.84476 1.90675 1.40452 1.23546 1.86555 1.46411 1.56196 1.27160 1.06383 1.19118 0.95292 0.92934 0.79651 1.21255 1.36982 1.09143 0.90689 0.91832 1.24958 0.94778 0.95089 0.99230 1.69985 1.37487 1.20671 1.24089 0.86360 0.78326 0.79793 0.82416 1.19632 1.20807 1.20790 0.90835 0.91203 0.91953 0.92726 0.90774 0.91276 0.92184 0.92022 0.92415 0.92273 0.92392 0.91740 0.91597 0.91479 0.91385 0.90929 0.77807 0.95509 0.95483 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.47 37.16 0.35 -1.79 16 2 C 0.07 1.08 2.78 -27.88 -0.08 1.01 16 3 H 0.08 1.04 7.57 -51.92 -0.39 0.64 16 4 O -0.35 -5.73 9.07 -55.09 -0.50 -6.23 16 5 C 0.09 1.12 1.92 -29.60 -0.06 1.06 16 6 C -0.14 -1.62 5.18 -27.30 -0.14 -1.76 16 7 C -0.12 -1.05 5.32 -27.39 -0.15 -1.19 16 8 C -0.12 -0.91 5.85 -25.62 -0.15 -1.06 16 9 C -0.12 -0.96 5.31 -27.44 -0.15 -1.11 16 10 C -0.11 -0.88 5.61 -27.35 -0.15 -1.03 16 11 C -0.12 -1.27 4.82 -29.60 -0.14 -1.41 16 12 C 0.50 10.53 7.18 -10.99 -0.08 10.45 16 13 O -0.54 -13.91 16.51 -14.31 -0.24 -14.14 16 14 N -0.71 -15.23 5.51 -61.47 -0.34 -15.57 16 15 C 0.25 6.73 5.43 -5.19 -0.03 6.71 16 16 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 17 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -26.23 13.29 55.43 0.74 -25.49 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H 0.07 0.86 7.92 -51.93 -0.41 0.45 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.64 7.93 -51.93 -0.41 0.23 16 27 H 0.05 0.57 6.87 -51.93 -0.36 0.21 16 28 H 0.07 0.89 6.97 -51.93 -0.36 0.53 16 29 H 0.07 0.90 7.81 -51.93 -0.41 0.49 16 30 H 0.06 0.50 6.63 -51.93 -0.34 0.15 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.06 0.56 6.62 -51.93 -0.34 0.22 16 36 H 0.07 0.50 6.98 -51.92 -0.36 0.13 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.83 7.46 -51.93 -0.39 0.44 16 40 H 0.39 7.03 8.10 -40.82 -0.33 6.70 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -32.79 338.87 -8.88 -41.67 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.45 Total: 2.38 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.18 Total: -3.55 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.40 Total: -41.06 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.74 Total: -20.37 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.79 -8.88 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332001309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.141 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds