Wall clock time and date at job start Mon Mar 30 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46833 * 2 1 4 4 O 1.42897 * 109.47204 * 119.99944 * 2 1 3 5 5 C 1.42903 * 114.00123 * 270.00018 * 4 2 1 6 6 C 1.54239 * 108.89580 * 271.39815 * 5 4 2 7 7 C 1.50562 * 108.48564 * 159.17609 * 6 5 4 8 8 C 1.54068 * 112.41500 * 94.26448 * 7 6 5 9 9 C 1.54069 * 112.81208 * 318.28244 * 8 7 6 10 10 C 1.50473 * 112.50192 * 318.28028 * 9 8 7 11 11 C 1.45536 * 108.89932 * 148.60415 * 5 4 2 12 12 C 1.50696 * 109.47092 * 240.00090 * 2 1 3 13 13 O 1.21284 * 120.00109 * 244.99821 * 12 2 1 14 14 N 1.34777 * 120.00137 * 65.00036 * 12 2 1 15 15 C 1.46506 * 119.99873 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.46928 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99963 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99865 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00518 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46948 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47174 * 120.00320 * 20 18 16 23 23 H 1.48497 * 109.47378 * 240.00235 * 20 18 16 24 24 H 1.08998 * 109.46817 * 60.00276 * 1 2 3 25 25 H 1.09001 * 109.46504 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46983 * 299.99621 * 1 2 3 27 27 H 1.09006 * 108.87364 * 29.99914 * 5 4 2 28 28 H 1.08997 * 109.63097 * 278.97322 * 6 5 4 29 29 H 1.09002 * 109.62960 * 39.55080 * 6 5 4 30 30 H 1.08997 * 108.91865 * 333.51063 * 7 6 5 31 31 H 1.08996 * 108.91877 * 215.01634 * 7 6 5 32 32 H 1.08996 * 108.81369 * 197.42142 * 8 7 6 33 33 H 1.09000 * 108.72552 * 79.07831 * 8 7 6 34 34 H 1.09011 * 108.87121 * 197.50649 * 9 8 7 35 35 H 1.08997 * 108.88179 * 79.06818 * 9 8 7 36 36 H 1.09009 * 109.62497 * 334.45108 * 10 9 8 37 37 H 1.08997 * 109.63223 * 213.86915 * 10 9 8 38 38 H 1.08998 * 108.89382 * 303.44687 * 11 5 4 39 39 H 1.09000 * 108.89364 * 62.03124 * 11 5 4 40 40 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 41 41 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 42 42 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 43 43 H 0.96992 * 120.00316 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 0.1830 2.2941 6 6 3.6324 0.7534 2.2477 7 6 3.6765 2.0018 3.0882 8 6 4.1430 1.7232 4.5299 9 6 3.5262 0.4406 5.1199 10 6 2.0678 0.2937 4.7798 11 6 1.9457 -0.5742 3.5107 12 6 2.0324 -0.7104 -1.2304 13 8 2.6530 -1.7466 -1.1215 14 7 1.7919 -0.1941 -2.4520 15 6 2.2798 -0.8851 -3.6482 16 6 1.8807 -0.1071 -4.8756 17 1 1.3201 0.8106 -4.7746 18 6 2.2322 -0.5661 -6.1272 19 7 2.9152 -1.6832 -6.2502 20 14 1.7368 0.3979 -7.6487 21 1 0.9797 1.6091 -7.2424 22 1 2.9544 0.8033 -8.3960 23 1 0.8831 -0.4519 -8.5171 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.4897 1.0077 2.2365 28 1 4.3325 0.0181 2.6443 29 1 3.8966 0.9965 1.2185 30 1 2.6802 2.4426 3.1188 31 1 4.3611 2.7140 2.6275 32 1 3.8647 2.5687 5.1589 33 1 5.2286 1.6251 4.5336 34 1 3.6349 0.4637 6.2043 35 1 4.0675 -0.4221 4.7316 36 1 1.6343 1.2766 4.5944 37 1 1.5461 -0.1898 5.6057 38 1 0.9395 -0.9906 3.4633 39 1 2.6632 -1.3923 3.5738 40 1 1.2952 0.6345 -2.5392 41 1 3.3662 -0.9637 -3.6047 42 1 1.8448 -1.8835 -3.6939 43 1 3.1621 -2.0063 -7.1307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332001309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:54 Heat of formation + Delta-G solvation = -135.021056 kcal Electronic energy + Delta-G solvation = -21113.968657 eV Core-core repulsion = 17964.098547 eV Total energy + Delta-G solvation = -3149.870111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14164 -40.06789 -37.70022 -36.15874 -34.48312 -33.28653 -32.91100 -31.35718 -29.19987 -26.18860 -25.52902 -25.05439 -23.82605 -21.72461 -21.32250 -20.13715 -19.09542 -18.26825 -17.73221 -16.93535 -16.67907 -16.47526 -15.93531 -15.75200 -15.43456 -14.91650 -14.76181 -14.22323 -14.15116 -14.01624 -13.92911 -13.62953 -13.27712 -13.20744 -13.05063 -12.90624 -12.75854 -12.48227 -12.21710 -12.17186 -12.01803 -11.47676 -11.42116 -11.39972 -11.24151 -11.16231 -10.82967 -10.74815 -10.37808 -9.88142 -8.29720 -6.46905 1.43443 1.44921 1.58418 1.67751 2.04253 2.39406 2.98582 3.05272 3.63521 3.78913 3.84502 3.95986 4.02215 4.10621 4.19315 4.23981 4.32353 4.39299 4.43982 4.54483 4.66564 4.77927 4.90991 4.96783 4.97781 5.09035 5.12822 5.18478 5.21021 5.23281 5.28131 5.32635 5.33666 5.36781 5.45684 5.46536 5.58548 5.65254 5.82538 6.25220 6.63739 6.87627 7.22206 7.44493 8.82945 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037524 B = 0.003337 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.005285 B = 8390.003957 C = 8532.390591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.081 3.919 3 H 0.111 0.889 4 O -0.386 6.386 5 C 0.090 3.910 6 C -0.140 4.140 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.124 4.124 10 C -0.102 4.102 11 C -0.121 4.121 12 C 0.492 3.508 13 O -0.594 6.594 14 N -0.701 5.701 15 C 0.266 3.734 16 C -0.554 4.554 17 H 0.087 0.913 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.987 3.013 21 H -0.250 1.250 22 H -0.280 1.280 23 H -0.279 1.279 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.410 0.590 41 H -0.014 1.014 42 H -0.014 1.014 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 12.018 22.041 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 H 0.129 0.871 4 O -0.305 6.305 5 C 0.034 3.966 6 C -0.178 4.178 7 C -0.152 4.152 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.139 4.139 11 C -0.159 4.159 12 C 0.278 3.722 13 O -0.475 6.475 14 N -0.352 5.352 15 C 0.144 3.856 16 C -0.592 4.592 17 H 0.105 0.895 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.810 3.190 21 H -0.173 1.173 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.246 0.754 41 H 0.004 0.996 42 H 0.004 0.996 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.035 10.972 22.004 24.917 hybrid contribution 0.177 0.045 -1.250 1.263 sum -3.858 11.017 20.754 23.811 Atomic orbital electron populations 1.22225 0.91401 1.03266 1.05027 1.21932 0.96358 0.96217 0.83465 0.87149 1.88115 1.86604 1.36027 1.19765 1.21349 0.96235 0.93270 0.85792 1.21878 0.97311 0.98735 0.99910 1.21280 1.02626 0.96094 0.95172 1.21916 1.00083 0.98059 0.95240 1.21397 0.95932 0.97839 1.00967 1.21212 0.96897 1.00235 0.95568 1.20564 1.02427 0.99152 0.93758 1.21409 0.79467 0.85402 0.85884 1.90641 1.42948 1.26377 1.87484 1.46111 1.56209 1.27578 1.05333 1.18569 0.92634 0.91980 0.82449 1.21638 1.37055 1.09795 0.90664 0.89458 1.26110 0.94370 0.96027 1.03254 1.70153 1.38892 1.22840 1.25224 0.85073 0.78040 0.78617 0.77247 1.17338 1.20526 1.20497 0.89412 0.93075 0.88354 0.90146 0.92302 0.93266 0.90673 0.91750 0.90673 0.92650 0.90951 0.93436 0.90227 0.90157 0.91358 0.92991 0.75390 0.99626 0.99578 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 9.47 71.98 0.68 -3.03 16 2 C 0.08 2.43 2.78 29.85 0.08 2.52 16 3 H 0.11 2.60 7.57 -2.38 -0.02 2.59 16 4 O -0.39 -12.46 9.07 -129.99 -1.18 -13.64 16 5 C 0.09 2.01 1.92 28.73 0.06 2.07 16 6 C -0.14 -3.14 5.18 30.22 0.16 -2.99 16 7 C -0.11 -1.78 5.32 30.17 0.16 -1.62 16 8 C -0.12 -1.54 5.85 31.32 0.18 -1.36 16 9 C -0.12 -1.71 5.31 30.14 0.16 -1.55 16 10 C -0.10 -1.35 5.61 30.20 0.17 -1.18 16 11 C -0.12 -2.39 4.82 28.73 0.14 -2.25 16 12 C 0.49 21.27 7.18 87.66 0.63 21.90 16 13 O -0.59 -32.67 16.51 15.95 0.26 -32.40 16 14 N -0.70 -30.44 5.51 -466.77 -2.57 -33.01 16 15 C 0.27 14.99 5.43 85.63 0.46 15.45 16 16 C -0.55 -30.24 9.28 25.60 0.24 -30.00 16 17 H 0.09 4.25 7.60 -2.91 -0.02 4.23 16 18 C 0.00 0.10 5.46 84.65 0.46 0.56 16 19 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 20 Si 0.99 42.28 29.54 68.60 2.03 44.31 16 21 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H 0.09 1.76 7.92 -2.39 -0.02 1.75 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 1.59 7.93 -2.39 -0.02 1.57 16 27 H 0.08 1.38 6.87 -2.38 -0.02 1.36 16 28 H 0.06 1.46 6.97 -2.39 -0.02 1.45 16 29 H 0.05 1.28 7.81 -2.39 -0.02 1.26 16 30 H 0.07 0.96 6.63 -2.39 -0.02 0.94 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.05 0.82 6.62 -2.39 -0.02 0.80 16 36 H 0.08 0.88 6.98 -2.38 -0.02 0.86 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.22 7.46 -2.39 -0.02 1.20 16 40 H 0.41 14.25 8.10 -92.71 -0.75 13.50 16 41 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 42 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -75.76 338.87 2.63 -73.13 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.23 Total: 19.74 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 3.58 Total: -1.48 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -2.29 Total: -89.65 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.92 Total: -46.04 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -75.76 2.63 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332001309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.891 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds