Wall clock time and date at job start Mon Mar 30 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47574 * 2 1 4 4 O 1.42896 * 109.47506 * 239.99544 * 2 1 3 5 5 C 1.42900 * 114.00324 * 149.71591 * 4 2 1 6 6 C 1.54246 * 108.89675 * 274.37499 * 5 4 2 7 7 C 1.50470 * 108.52790 * 159.26002 * 6 5 4 8 8 C 1.54073 * 112.49806 * 94.15020 * 7 6 5 9 9 C 1.54061 * 112.81388 * 318.28506 * 8 7 6 10 10 C 1.50470 * 112.49905 * 318.28060 * 9 8 7 11 11 C 1.45541 * 108.90216 * 151.49087 * 5 4 2 12 12 C 1.50699 * 109.46975 * 119.99614 * 2 1 3 13 13 O 1.21279 * 120.00133 * 114.99948 * 12 2 1 14 14 N 1.34783 * 120.00258 * 295.00267 * 12 2 1 15 15 C 1.46496 * 120.00244 * 180.27489 * 14 12 2 16 16 C 1.50700 * 109.47114 * 179.72449 * 15 14 12 17 17 H 1.07996 * 119.99889 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99747 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00293 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99802 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47026 * 59.99831 * 20 18 16 22 22 H 1.48498 * 109.47353 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47393 * 300.00125 * 20 18 16 24 24 H 1.09004 * 109.47487 * 177.38064 * 1 2 3 25 25 H 1.08999 * 109.48009 * 297.38644 * 1 2 3 26 26 H 1.09003 * 109.46967 * 57.38826 * 1 2 3 27 27 H 1.09004 * 108.87045 * 32.88044 * 5 4 2 28 28 H 1.08995 * 109.62773 * 278.97692 * 6 5 4 29 29 H 1.08997 * 109.62898 * 39.54964 * 6 5 4 30 30 H 1.09005 * 108.87481 * 333.37403 * 7 6 5 31 31 H 1.08999 * 108.88025 * 214.92795 * 7 6 5 32 32 H 1.09003 * 108.80966 * 197.42294 * 8 7 6 33 33 H 1.09000 * 108.72702 * 79.08555 * 8 7 6 34 34 H 1.09008 * 108.87431 * 197.50677 * 9 8 7 35 35 H 1.08997 * 108.79898 * 79.00977 * 9 8 7 36 36 H 1.09004 * 109.63077 * 334.45178 * 10 9 8 37 37 H 1.09000 * 109.63615 * 213.86348 * 10 9 8 38 38 H 1.09010 * 108.88969 * 303.44525 * 11 5 4 39 39 H 1.09000 * 108.89179 * 62.02462 * 11 5 4 40 40 H 0.97000 * 119.99284 * 359.97438 * 14 12 2 41 41 H 1.09000 * 109.47196 * 299.72172 * 15 14 12 42 42 H 1.08996 * 109.47146 * 59.72452 * 15 14 12 43 43 H 0.97003 * 119.99985 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.2629 -0.1897 -1.6450 6 6 3.0133 1.0195 -2.5695 7 6 4.2817 1.8243 -2.6570 8 6 5.1438 1.4357 -3.8734 9 6 5.2034 -0.0868 -4.1015 10 6 5.3583 -0.8557 -2.8174 11 6 3.9578 -1.2732 -2.3243 12 6 2.0322 -0.7103 1.2305 13 8 2.6528 -1.7466 1.1217 14 7 1.7917 -0.1941 2.4521 15 6 2.2852 -0.8814 3.6480 16 6 1.8911 -0.1002 4.8750 17 1 1.3297 0.8168 4.7740 18 6 2.2484 -0.5557 6.1263 19 7 2.9325 -1.6721 6.2492 20 14 1.7605 0.4130 7.6472 21 1 0.2808 0.5192 7.7129 22 1 2.2606 -0.2837 8.8595 23 1 2.3517 1.7735 7.5784 24 1 -0.3634 -1.0266 -0.0470 25 1 -0.3635 0.4727 0.9124 26 1 -0.3633 0.5539 -0.8657 27 1 3.8622 0.1357 -0.7946 28 1 2.7327 0.6692 -3.5627 29 1 2.2156 1.6372 -2.1571 30 1 4.8627 1.6667 -1.7483 31 1 4.0246 2.8810 -2.7301 32 1 6.1566 1.8082 -3.7198 33 1 4.7271 1.9083 -4.7629 34 1 6.0482 -0.3131 -4.7522 35 1 4.2844 -0.4044 -4.5941 36 1 5.8372 -0.2250 -2.0684 37 1 5.9644 -1.7444 -2.9935 38 1 4.0613 -2.1123 -1.6363 39 1 3.3636 -1.5911 -3.1811 40 1 1.2956 0.6349 2.5391 41 1 1.8512 -1.8800 3.6982 42 1 3.3713 -0.9593 3.6001 43 1 3.1835 -1.9927 7.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332001310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:56 Heat of formation + Delta-G solvation = -136.048466 kcal Electronic energy + Delta-G solvation = -21317.563137 eV Core-core repulsion = 18167.648474 eV Total energy + Delta-G solvation = -3149.914662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.23768 -39.96894 -37.65008 -36.14628 -34.50856 -33.40815 -32.94615 -31.32338 -29.20706 -25.86382 -25.69219 -25.12883 -23.93430 -21.68897 -21.35810 -20.18565 -19.11918 -18.28742 -17.72803 -17.16347 -16.68658 -16.29420 -16.09170 -15.64217 -15.37999 -14.91901 -14.77967 -14.31437 -14.08781 -13.98376 -13.94518 -13.55935 -13.20471 -13.09539 -13.07206 -12.95918 -12.68642 -12.53297 -12.38595 -12.23875 -11.93048 -11.54915 -11.51914 -11.40087 -11.26279 -11.19855 -11.06094 -10.80820 -10.18761 -9.87751 -8.30185 -6.47754 1.42682 1.47111 1.55345 1.67123 2.22285 2.41603 2.73248 3.04497 3.61434 3.79149 3.87582 3.97621 3.99798 4.07460 4.17132 4.25298 4.29760 4.35983 4.42800 4.55224 4.70190 4.83764 4.86174 4.96725 4.99843 5.06299 5.07887 5.19216 5.19830 5.21257 5.24690 5.31737 5.33356 5.35924 5.44871 5.45432 5.56103 5.65216 5.81993 6.15728 6.62680 6.87400 7.21524 7.44407 8.81944 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.003706 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.313378 B = 7553.310544 C = 7720.315607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.112 0.888 4 O -0.373 6.373 5 C 0.093 3.907 6 C -0.128 4.128 7 C -0.121 4.121 8 C -0.115 4.115 9 C -0.118 4.118 10 C -0.107 4.107 11 C -0.119 4.119 12 C 0.467 3.533 13 O -0.595 6.595 14 N -0.702 5.702 15 C 0.267 3.733 16 C -0.557 4.557 17 H 0.087 0.913 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.286 1.286 23 H -0.261 1.261 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.409 0.591 41 H -0.015 1.015 42 H -0.016 1.016 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 10.759 -20.095 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.020 3.980 3 H 0.129 0.871 4 O -0.291 6.291 5 C 0.036 3.964 6 C -0.166 4.166 7 C -0.158 4.158 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.145 4.145 11 C -0.157 4.157 12 C 0.254 3.746 13 O -0.476 6.476 14 N -0.354 5.354 15 C 0.144 3.856 16 C -0.595 4.595 17 H 0.105 0.895 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.810 3.190 21 H -0.185 1.185 22 H -0.212 1.212 23 H -0.185 1.185 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.245 0.755 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.259 9.753 -20.147 22.385 hybrid contribution 0.129 0.014 1.440 1.446 sum -0.129 9.767 -18.707 21.103 Atomic orbital electron populations 1.21848 0.89122 1.03460 1.05130 1.22147 0.97895 0.95812 0.82182 0.87092 1.88008 1.37699 1.62063 1.41354 1.21226 0.84143 0.95293 0.95765 1.21820 0.98747 0.95531 1.00474 1.21307 0.95574 1.00184 0.98777 1.21919 0.99906 0.95381 0.98011 1.21360 1.02566 0.95053 0.96554 1.21222 0.94496 1.00484 0.98309 1.20517 0.97159 0.97516 1.00515 1.22393 0.79696 0.85847 0.86655 1.90630 1.43178 1.26260 1.87550 1.46220 1.55941 1.27557 1.05667 1.18531 0.92447 0.91979 0.82673 1.21590 1.37207 1.09864 0.90800 0.89523 1.26107 0.94296 0.96023 1.03236 1.70143 1.38677 1.22928 1.25348 0.85178 0.79151 0.78362 0.76354 1.18504 1.21183 1.18497 0.92981 0.89093 0.87938 0.94866 0.90052 0.90533 0.93382 0.90431 0.91798 0.90866 0.90958 0.91711 0.92270 0.90976 0.94425 0.90658 0.75479 0.99740 0.99792 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.52 71.98 0.69 -2.52 16 2 C 0.08 2.42 2.75 29.84 0.08 2.50 16 3 H 0.11 2.62 7.36 -2.38 -0.02 2.60 16 4 O -0.37 -12.00 9.09 -129.99 -1.18 -13.18 16 5 C 0.09 2.54 1.92 28.74 0.06 2.60 16 6 C -0.13 -2.45 5.15 30.20 0.16 -2.29 16 7 C -0.12 -2.01 5.31 30.14 0.16 -1.85 16 8 C -0.11 -1.62 5.85 31.32 0.18 -1.44 16 9 C -0.12 -1.85 5.32 30.13 0.16 -1.69 16 10 C -0.11 -2.25 5.61 30.20 0.17 -2.08 16 11 C -0.12 -3.21 4.82 28.74 0.14 -3.07 16 12 C 0.47 19.93 7.10 87.66 0.62 20.56 16 13 O -0.60 -31.94 16.51 15.96 0.26 -31.68 16 14 N -0.70 -30.43 5.48 -466.79 -2.56 -32.99 16 15 C 0.27 15.00 5.43 85.63 0.46 15.46 16 16 C -0.56 -30.48 9.28 25.60 0.24 -30.24 16 17 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 18 C 0.00 0.16 5.46 84.66 0.46 0.63 16 19 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 20 Si 0.99 42.25 29.54 68.60 2.03 44.27 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 24 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.09 1.84 7.84 -2.39 -0.02 1.82 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.03 1.05 7.12 -2.39 -0.02 1.03 16 28 H 0.08 1.43 6.97 -2.39 -0.02 1.42 16 29 H 0.08 1.32 7.55 -2.39 -0.02 1.30 16 30 H 0.05 0.94 6.63 -2.38 -0.02 0.93 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.06 1.00 6.62 -2.39 -0.02 0.99 16 36 H 0.06 1.32 6.98 -2.38 -0.02 1.30 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.07 1.85 7.46 -2.39 -0.02 1.83 16 40 H 0.41 14.26 8.06 -92.71 -0.75 13.51 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -74.58 338.64 2.65 -71.93 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.23 Total: 21.74 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 3.58 Total: -3.43 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -2.27 Total: -89.65 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.92 Total: -44.85 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -74.58 2.65 -71.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332001310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.120 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds