Wall clock time and date at job start Mon Mar 30 2020 00:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99486 * 2 1 4 4 H 1.08997 * 109.47396 * 29.99932 * 3 2 1 5 5 C 1.53001 * 109.46869 * 269.99494 * 3 2 1 6 6 C 1.52999 * 109.47125 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47175 * 60.00218 * 6 5 3 8 8 C 1.53009 * 109.46977 * 300.00168 * 7 6 5 9 9 H 1.09001 * 109.46748 * 299.99930 * 8 7 6 10 10 C 1.50704 * 109.46973 * 180.02562 * 8 7 6 11 11 O 1.21279 * 119.99734 * 259.91186 * 10 8 7 12 12 N 1.34771 * 120.00061 * 79.90641 * 10 8 7 13 13 C 1.46499 * 120.00146 * 184.16594 * 12 10 8 14 14 C 1.46506 * 120.00017 * 4.17370 * 12 10 8 15 15 H 1.09002 * 109.47230 * 356.21623 * 14 12 10 16 16 C 1.53000 * 109.46769 * 236.21693 * 14 12 10 17 17 C 1.50699 * 109.47183 * 116.21596 * 14 12 10 18 18 H 1.08000 * 120.00335 * 0.02562 * 17 14 12 19 19 C 1.37875 * 119.99985 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00122 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00263 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47282 * 89.99568 * 21 19 17 23 23 H 1.48497 * 109.47255 * 210.00465 * 21 19 17 24 24 H 1.48505 * 109.46823 * 330.00165 * 21 19 17 25 25 C 1.52999 * 109.47305 * 59.99912 * 8 7 6 26 26 H 1.09006 * 109.47437 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47634 * 299.99962 * 1 2 3 28 28 H 1.09001 * 109.47501 * 60.00456 * 1 2 3 29 29 H 1.09004 * 109.47149 * 60.00183 * 5 3 2 30 30 H 1.08997 * 109.47470 * 300.00393 * 5 3 2 31 31 H 1.09006 * 109.46646 * 300.00318 * 6 5 3 32 32 H 1.08996 * 109.47144 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47325 * 59.99745 * 7 6 5 34 34 H 1.09000 * 109.47336 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46778 * 84.75903 * 13 12 10 36 36 H 1.09000 * 109.47389 * 204.75758 * 13 12 10 37 37 H 1.08999 * 109.46914 * 324.76143 * 13 12 10 38 38 H 1.08993 * 109.47574 * 60.00186 * 16 14 12 39 39 H 1.09001 * 109.46746 * 180.02562 * 16 14 12 40 40 H 1.09002 * 109.47188 * 299.99956 * 16 14 12 41 41 H 0.97001 * 120.00469 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.46646 * 59.99867 * 25 8 7 43 43 H 1.08996 * 109.47144 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 2.8404 3.1689 -1.4426 7 6 4.1891 3.1263 -0.7215 8 6 3.9816 2.6604 0.7211 9 1 3.3166 3.3545 1.2349 10 6 5.3100 2.6190 1.4315 11 8 5.8898 1.5630 1.5722 12 7 5.8538 3.7553 1.9104 13 6 7.1859 3.7299 2.5196 14 6 5.1127 5.0160 1.8219 15 1 4.1796 4.8519 1.2829 16 6 5.9566 6.0523 1.0770 17 6 4.8093 5.5189 3.2097 18 1 5.1362 4.9560 4.0716 19 6 4.1153 6.6981 3.3793 20 7 3.7186 7.3844 2.3299 21 14 3.7398 7.3219 5.0996 22 1 4.8473 8.1965 5.5617 23 1 2.4728 8.0961 5.0798 24 1 3.6009 6.1687 6.0249 25 6 3.3588 1.2629 0.7211 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.2568 1.8014 -1.9564 30 1 2.8829 1.0775 -1.9563 31 1 2.1753 3.8630 -0.9286 32 1 2.9878 3.5009 -2.4702 33 1 4.8541 2.4321 -1.2354 34 1 4.6326 4.1220 -0.7212 35 1 7.9434 3.8148 1.7405 36 1 7.2838 4.5644 3.2141 37 1 7.3215 2.7917 3.0576 38 1 6.1760 5.6887 0.0733 39 1 5.4054 6.9905 1.0116 40 1 6.8897 6.2164 1.6161 41 1 3.2301 8.2139 2.4492 42 1 4.0239 0.5688 0.2072 43 1 3.2115 0.9308 1.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339931807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:11 Heat of formation + Delta-G solvation = -118.265466 kcal Electronic energy + Delta-G solvation = -22173.768740 eV Core-core repulsion = 19024.625206 eV Total energy + Delta-G solvation = -3149.143534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38175 -39.61385 -37.36690 -37.12693 -34.55398 -32.13859 -31.14218 -30.94108 -27.99990 -27.32169 -27.21595 -24.20989 -23.33680 -23.01143 -21.11747 -19.71726 -18.46288 -18.22180 -17.34434 -16.81487 -16.56783 -16.18946 -16.01316 -15.89688 -15.41189 -14.88351 -14.63514 -14.40807 -14.16589 -13.84362 -13.54199 -13.40007 -13.09405 -13.04317 -12.86550 -12.75685 -12.62280 -12.55546 -12.39807 -12.18000 -12.03483 -11.90812 -11.63673 -11.46040 -11.44795 -11.19170 -10.70644 -10.48290 -10.30358 -9.37733 -8.14087 -6.28288 1.41819 1.45311 1.52867 1.73460 2.28736 2.45416 2.85532 3.13870 3.57531 3.72688 3.93053 4.06117 4.15683 4.26422 4.33425 4.41345 4.45950 4.55846 4.57554 4.64414 4.65397 4.66076 4.73071 4.86141 4.93410 4.94428 4.98192 5.06742 5.07871 5.14725 5.16937 5.21806 5.28207 5.41123 5.45882 5.58710 5.75428 6.00704 6.22247 6.30043 6.65038 6.84931 7.31103 7.45603 8.88535 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.005939 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.715591 B = 4713.549937 C = 5232.927779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.093 3.907 4 H 0.066 0.934 5 C -0.132 4.132 6 C -0.108 4.108 7 C -0.104 4.104 8 C -0.096 4.096 9 H 0.091 0.909 10 C 0.508 3.492 11 O -0.599 6.599 12 N -0.597 5.597 13 C 0.094 3.906 14 C 0.257 3.743 15 H 0.052 0.948 16 C -0.138 4.138 17 C -0.546 4.546 18 H 0.047 0.953 19 C 0.032 3.968 20 N -0.904 5.904 21 Si 0.950 3.050 22 H -0.276 1.276 23 H -0.280 1.280 24 H -0.278 1.278 25 C -0.087 4.087 26 H 0.098 0.902 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.267 0.733 42 H 0.065 0.935 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -6.175 -7.292 10.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.036 3.964 4 H 0.084 0.916 5 C -0.169 4.169 6 C -0.145 4.145 7 C -0.142 4.142 8 C -0.117 4.117 9 H 0.109 0.891 10 C 0.297 3.703 11 O -0.482 6.482 12 N -0.326 5.326 13 C -0.049 4.049 14 C 0.156 3.844 15 H 0.069 0.931 16 C -0.197 4.197 17 C -0.584 4.584 18 H 0.066 0.934 19 C -0.169 4.169 20 N -0.542 5.542 21 Si 0.776 3.224 22 H -0.201 1.201 23 H -0.206 1.206 24 H -0.203 1.203 25 C -0.126 4.126 26 H 0.117 0.883 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.733 -6.668 -7.254 10.931 hybrid contribution -0.147 0.763 1.295 1.510 sum -4.880 -5.906 -5.959 9.706 Atomic orbital electron populations 1.22984 0.79645 1.03794 1.00800 1.87869 1.21368 1.28182 1.95261 1.22099 0.93608 0.84334 0.96396 0.91629 1.21981 1.02131 0.96917 0.95889 1.21447 0.94936 0.96645 1.01482 1.21485 0.99344 1.01349 0.91975 1.21192 0.93666 0.98713 0.98124 0.89088 1.20959 0.87797 0.82889 0.78624 1.90561 1.65377 1.31042 1.61268 1.48314 1.18163 1.09444 1.56696 1.21442 0.83517 1.01957 0.98013 1.18961 0.90860 0.78961 0.95634 0.93083 1.21949 0.99186 1.01737 0.96818 1.21554 1.36772 1.07387 0.92711 0.93435 1.25433 0.95117 0.96378 0.99977 1.69925 1.38286 1.16013 1.30021 0.85687 0.77796 0.78173 0.80742 1.20131 1.20558 1.20349 1.21249 0.95813 0.95101 1.00395 0.88327 0.93799 0.92677 0.89869 0.91274 0.91532 0.89178 0.91587 0.91647 0.92606 0.90726 0.92692 0.95071 0.90588 0.94841 0.92395 0.91575 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.82 113.37 1.23 1.68 16 2 O -0.41 -11.17 10.35 -148.98 -1.54 -12.71 16 3 C 0.09 2.55 2.61 30.59 0.08 2.63 16 4 H 0.07 1.74 7.79 -2.39 -0.02 1.72 16 5 C -0.13 -3.03 5.54 30.59 0.17 -2.86 16 6 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 7 C -0.10 -3.15 4.96 30.60 0.15 -3.00 16 8 C -0.10 -3.43 1.66 -11.54 -0.02 -3.45 16 9 H 0.09 3.49 6.50 -2.39 -0.02 3.48 16 10 C 0.51 21.65 6.83 87.66 0.60 22.25 16 11 O -0.60 -28.16 15.67 -3.03 -0.05 -28.21 16 12 N -0.60 -25.65 2.75 -826.79 -2.28 -27.93 16 13 C 0.09 3.65 9.29 127.77 1.19 4.83 16 14 C 0.26 11.73 2.00 44.24 0.09 11.82 16 15 H 0.05 2.41 4.88 -2.39 -0.01 2.39 16 16 C -0.14 -6.00 8.91 71.98 0.64 -5.36 16 17 C -0.55 -27.66 8.02 25.60 0.21 -27.45 16 18 H 0.05 2.49 7.68 -2.91 -0.02 2.47 16 19 C 0.03 1.61 5.30 84.65 0.45 2.06 16 20 N -0.90 -46.33 11.32 21.45 0.24 -46.08 16 21 Si 0.95 40.80 29.54 68.60 2.03 42.83 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 C -0.09 -2.94 4.32 30.59 0.13 -2.81 16 26 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16 28 H 0.05 0.88 7.87 -2.39 -0.02 0.86 16 29 H 0.08 1.57 7.87 -2.38 -0.02 1.55 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.13 7.00 -2.39 -0.02 2.12 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 2.89 7.26 -2.39 -0.02 2.87 16 37 H 0.05 2.14 7.53 -2.39 -0.02 2.12 16 38 H 0.03 1.20 7.91 -2.39 -0.02 1.18 16 39 H 0.08 3.61 6.07 -2.39 -0.01 3.60 16 40 H 0.03 1.40 7.49 -2.39 -0.02 1.38 16 41 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 42 H 0.07 2.36 7.90 -2.38 -0.02 2.34 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -58.53 334.28 4.46 -54.07 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.97 Total: 20.09 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 5.09 Total: -2.07 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -2.03 Total: -74.01 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.59 Total: -40.92 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -58.53 4.46 -54.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339931807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.195 kcal (2) G-P(sol) polarization free energy of solvation -58.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds