Wall clock time and date at job start Mon Mar 30 2020 00:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00423 * 2 1 4 4 H 1.09005 * 109.47207 * 29.99874 * 3 2 1 5 5 C 1.52998 * 109.46994 * 269.99949 * 3 2 1 6 6 C 1.53003 * 109.46896 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47305 * 60.00147 * 6 5 3 8 8 C 1.52998 * 109.47024 * 299.99774 * 7 6 5 9 9 H 1.09001 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47352 * 299.99797 * 8 7 6 11 11 O 1.21290 * 120.00061 * 119.99837 * 10 8 7 12 12 N 1.34771 * 120.00146 * 300.00373 * 10 8 7 13 13 C 1.46505 * 119.99954 * 359.97438 * 12 10 8 14 14 C 1.46502 * 120.00086 * 179.97438 * 12 10 8 15 15 H 1.08994 * 109.47242 * 359.97438 * 14 12 10 16 16 C 1.53003 * 109.46850 * 239.99606 * 14 12 10 17 17 C 1.50703 * 109.47384 * 119.99966 * 14 12 10 18 18 H 1.07995 * 120.00202 * 34.99876 * 17 14 12 19 19 C 1.37873 * 119.99880 * 215.00325 * 17 14 12 20 20 N 1.31513 * 120.00265 * 184.91090 * 19 17 14 21 21 Si 1.86802 * 119.99983 * 4.91325 * 19 17 14 22 22 H 1.48506 * 109.47143 * 84.83756 * 21 19 17 23 23 H 1.48507 * 109.47329 * 204.83283 * 21 19 17 24 24 H 1.48499 * 109.47196 * 324.83556 * 21 19 17 25 25 C 1.52999 * 109.47243 * 149.99701 * 3 2 1 26 26 H 1.08999 * 109.46766 * 59.99705 * 1 2 3 27 27 H 1.08996 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46839 * 300.00017 * 1 2 3 29 29 H 1.08995 * 109.47279 * 299.99484 * 5 3 2 30 30 H 1.09001 * 109.47131 * 59.99797 * 5 3 2 31 31 H 1.09006 * 109.47012 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47391 * 300.00073 * 6 5 3 33 33 H 1.09004 * 109.47648 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.47401 * 59.99981 * 7 6 5 35 35 H 1.08998 * 109.47068 * 90.00266 * 13 12 10 36 36 H 1.08998 * 109.46823 * 330.00181 * 13 12 10 37 37 H 1.09008 * 109.46762 * 210.00231 * 13 12 10 38 38 H 1.08995 * 109.47112 * 54.97780 * 16 14 12 39 39 H 1.08999 * 109.46947 * 174.97837 * 16 14 12 40 40 H 1.08997 * 109.47381 * 294.97388 * 16 14 12 41 41 H 0.96997 * 120.00546 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.47262 * 60.00352 * 25 3 2 43 43 H 1.08996 * 109.47225 * 300.00190 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7712 -1.4425 6 6 2.8396 3.1692 -1.4425 7 6 4.1882 3.1275 -0.7211 8 6 3.9807 2.6617 0.7214 9 1 4.9415 2.6316 1.2353 10 6 3.0606 3.6208 1.4316 11 8 2.0107 3.2251 1.8925 12 7 3.4042 4.9181 1.5547 13 6 4.6725 5.3959 0.9985 14 6 2.5094 5.8506 2.2447 15 1 1.6224 5.3174 2.5865 16 6 2.0945 6.9656 1.2826 17 6 3.2238 6.4491 3.4290 18 1 4.2827 6.6541 3.3738 19 6 2.5255 6.7350 4.5829 20 7 3.1263 7.3454 5.5810 21 14 0.7260 6.2552 4.7288 22 1 0.6250 4.8448 5.1824 23 1 0.0558 7.1413 5.7143 24 1 0.0668 6.3982 3.4059 25 6 3.3589 1.2631 0.7213 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.8830 1.0774 -1.9563 30 1 1.2569 1.8013 -1.9563 31 1 2.9870 3.5013 -2.4702 32 1 2.1741 3.8629 -0.9288 33 1 4.6314 4.1234 -0.7214 34 1 4.8538 2.4338 -1.2348 35 1 4.5180 5.7231 -0.0297 36 1 5.4043 4.5884 1.0167 37 1 5.0387 6.2318 1.5947 38 1 1.6579 6.5273 0.3852 39 1 1.3600 7.6089 1.7671 40 1 2.9700 7.5549 1.0101 41 1 2.6349 7.5468 6.3927 42 1 4.0243 0.5692 0.2075 43 1 3.2111 0.9312 1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339931808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:13 Heat of formation + Delta-G solvation = -91.161397 kcal Electronic energy + Delta-G solvation = -22580.128176 eV Core-core repulsion = 19432.159963 eV Total energy + Delta-G solvation = -3147.968213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36560 -38.06608 -36.00260 -35.42349 -32.74984 -31.17549 -30.40209 -29.29755 -26.46595 -26.19124 -25.29281 -23.49720 -22.20359 -21.29267 -19.77322 -18.09048 -17.08909 -16.78286 -15.85460 -15.60128 -15.42972 -14.99572 -14.81480 -14.21182 -13.95075 -13.30277 -13.19006 -13.06301 -12.59901 -12.48121 -12.38953 -12.16370 -12.04887 -11.86347 -11.72673 -11.45650 -11.28591 -11.06805 -10.87903 -10.74998 -10.66752 -10.45387 -10.28332 -10.17416 -9.80117 -9.31783 -9.26441 -8.78088 -8.62308 -7.66372 -6.18893 -4.21059 3.28448 3.30768 3.36736 3.43571 3.83776 3.88686 4.36577 4.79479 4.81815 4.90963 5.15958 5.21831 5.28423 5.33700 5.43526 5.50196 5.52081 5.56519 5.64320 5.73198 5.74378 5.82973 5.90328 5.91350 6.04271 6.12270 6.20446 6.22174 6.26971 6.36180 6.38772 6.41403 6.48275 6.57010 6.91222 7.06393 7.40483 7.46904 7.62918 8.13794 8.49158 8.82261 8.95146 9.43891 10.93005 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.006467 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.299376 B = 4328.314609 C = 4969.277218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.074 3.926 4 H 0.096 0.904 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.107 4.107 9 H 0.098 0.902 10 C 0.511 3.489 11 O -0.556 6.556 12 N -0.586 5.586 13 C 0.081 3.919 14 C 0.222 3.778 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.525 4.525 18 H 0.078 0.922 19 C 0.080 3.920 20 N -0.892 5.892 21 Si 0.875 3.125 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.264 1.264 25 C -0.090 4.090 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.266 0.734 42 H 0.069 0.931 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 -9.019 -14.227 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.016 3.984 4 H 0.114 0.886 5 C -0.175 4.175 6 C -0.156 4.156 7 C -0.160 4.160 8 C -0.129 4.129 9 H 0.116 0.884 10 C 0.298 3.702 11 O -0.436 6.436 12 N -0.316 5.316 13 C -0.063 4.063 14 C 0.121 3.879 15 H 0.081 0.919 16 C -0.204 4.204 17 C -0.563 4.563 18 H 0.096 0.904 19 C -0.124 4.124 20 N -0.529 5.529 21 Si 0.702 3.298 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.128 4.128 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.194 -9.271 -13.779 16.609 hybrid contribution -0.977 0.106 0.219 1.007 sum -0.783 -9.165 -13.561 16.386 Atomic orbital electron populations 1.22711 0.81662 1.01902 1.00037 1.87801 1.19262 1.28808 1.95103 1.22544 0.96207 0.84793 0.94810 0.88599 1.22017 1.00783 0.96930 0.97771 1.21495 0.96851 0.96870 1.00415 1.21812 0.97857 1.02795 0.93563 1.21340 0.99763 0.94765 0.96989 0.88362 1.20406 0.86950 0.83027 0.79790 1.90552 1.25820 1.76984 1.50260 1.48284 1.20363 1.08271 1.54708 1.21778 0.86041 1.00796 0.97695 1.19298 0.91070 0.86601 0.90904 0.91853 1.22206 1.00491 0.99681 0.98058 1.21115 0.97542 1.41390 0.96265 0.90392 1.24953 0.98214 0.93971 0.95279 1.69884 1.37185 1.40171 1.05617 0.86896 0.85439 0.79170 0.78316 1.19639 1.21420 1.18911 1.21285 0.95219 0.94773 1.01536 0.94586 0.90239 0.93810 0.91636 0.92384 0.91665 0.91662 0.89940 0.91143 0.93547 0.92239 0.90143 0.95618 0.92725 0.93182 0.92384 0.91229 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 101.05 1.09 1.52 16 2 O -0.39 -6.01 10.35 -35.23 -0.36 -6.37 16 3 C 0.07 1.13 2.31 -26.73 -0.06 1.07 16 4 H 0.10 1.76 5.15 -51.93 -0.27 1.49 16 5 C -0.14 -1.77 5.54 -26.73 -0.15 -1.92 16 6 C -0.12 -1.49 5.70 -26.73 -0.15 -1.64 16 7 C -0.12 -1.45 5.09 -26.74 -0.14 -1.59 16 8 C -0.11 -1.56 2.21 -91.75 -0.20 -1.77 16 9 H 0.10 1.30 7.40 -51.93 -0.38 0.91 16 10 C 0.51 9.96 5.56 -10.99 -0.06 9.90 16 11 O -0.56 -12.82 12.99 5.55 0.07 -12.74 16 12 N -0.59 -11.71 2.75 -175.26 -0.48 -12.20 16 13 C 0.08 1.26 7.95 59.85 0.48 1.74 16 14 C 0.22 5.24 2.30 -69.08 -0.16 5.08 16 15 H 0.06 1.65 4.05 -51.93 -0.21 1.44 16 16 C -0.15 -3.01 9.10 37.16 0.34 -2.67 16 17 C -0.53 -14.22 8.72 -34.44 -0.30 -14.52 16 18 H 0.08 2.23 6.82 -52.49 -0.36 1.87 16 19 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 20 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 21 Si 0.87 22.16 26.99 -169.99 -4.59 17.57 16 22 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.26 -6.46 6.82 56.52 0.39 -6.07 16 25 C -0.09 -1.34 4.75 -26.70 -0.13 -1.46 16 26 H 0.04 0.41 7.87 -51.93 -0.41 0.00 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.58 8.08 -51.93 -0.42 0.17 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.98 7.22 -51.93 -0.37 0.60 16 33 H 0.08 0.92 4.53 -51.93 -0.24 0.68 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.62 6.95 -51.93 -0.36 0.25 16 36 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 37 H 0.08 1.39 6.56 -51.92 -0.34 1.05 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -31.71 323.36 -6.27 -37.98 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.02 Total: 0.85 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 0.46 Total: -4.10 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.29 Total: -38.06 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.29 Total: -19.12 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.59 Total: 17.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.71 -6.27 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339931808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.181 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds