Wall clock time and date at job start Mon Mar 30 2020 00:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00377 * 2 1 4 4 H 1.08994 * 109.47306 * 29.99392 * 3 2 1 5 5 C 1.53004 * 109.46853 * 269.99413 * 3 2 1 6 6 C 1.52996 * 109.47259 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47514 * 59.99956 * 6 5 3 8 8 C 1.53003 * 109.47078 * 300.00609 * 7 6 5 9 9 H 1.09002 * 109.47078 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46694 * 299.99548 * 8 7 6 11 11 O 1.21277 * 119.99793 * 108.42759 * 10 8 7 12 12 N 1.34773 * 119.99737 * 288.42076 * 10 8 7 13 13 C 1.46508 * 119.99757 * 184.54709 * 12 10 8 14 14 C 1.46495 * 120.00333 * 4.54203 * 12 10 8 15 15 H 1.08997 * 109.47229 * 357.32775 * 14 12 10 16 16 C 1.53004 * 109.47021 * 117.32700 * 14 12 10 17 17 C 1.50703 * 109.47497 * 237.32275 * 14 12 10 18 18 H 1.08000 * 119.99957 * 0.28055 * 17 14 12 19 19 C 1.37881 * 119.99813 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99330 * 180.02562 * 19 17 14 21 21 Si 1.86796 * 120.00392 * 0.02562 * 19 17 14 22 22 H 1.48497 * 109.47003 * 89.99562 * 21 19 17 23 23 H 1.48500 * 109.46965 * 209.99811 * 21 19 17 24 24 H 1.48501 * 109.47015 * 329.99759 * 21 19 17 25 25 C 1.52996 * 109.47446 * 59.99349 * 8 7 6 26 26 H 1.08999 * 109.47610 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47186 * 300.00791 * 1 2 3 28 28 H 1.09007 * 109.46793 * 60.00176 * 1 2 3 29 29 H 1.09004 * 109.47045 * 300.00078 * 5 3 2 30 30 H 1.09006 * 109.46738 * 60.00049 * 5 3 2 31 31 H 1.08998 * 109.47458 * 180.02562 * 6 5 3 32 32 H 1.09004 * 109.47142 * 300.00002 * 6 5 3 33 33 H 1.08994 * 109.47979 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.46878 * 59.99884 * 7 6 5 35 35 H 1.09004 * 109.46838 * 275.10904 * 13 12 10 36 36 H 1.08997 * 109.47145 * 35.10762 * 13 12 10 37 37 H 1.09000 * 109.47226 * 155.11245 * 13 12 10 38 38 H 1.09003 * 109.47000 * 180.02562 * 16 14 12 39 39 H 1.08998 * 109.46907 * 299.99986 * 16 14 12 40 40 H 1.08995 * 109.47574 * 59.99907 * 16 14 12 41 41 H 0.97004 * 119.99769 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47142 * 60.00337 * 25 8 7 43 43 H 1.08998 * 109.47458 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 2.8408 3.1686 -1.4427 7 6 4.1894 3.1258 -0.7215 8 6 3.9819 2.6600 0.7210 9 1 4.9427 2.6300 1.2349 10 6 3.0626 3.6199 1.4314 11 8 1.9302 3.2838 1.7064 12 7 3.4990 4.8516 1.7613 13 6 2.6408 5.7488 2.5391 14 6 4.8315 5.2932 1.3424 15 1 5.3358 4.4807 0.8194 16 6 4.6992 6.4971 0.4074 17 6 5.6353 5.6853 2.5553 18 1 5.1989 5.6085 3.5402 19 6 6.9300 6.1362 2.4081 20 7 7.6315 6.4779 3.4668 21 14 7.6875 6.2617 0.7052 22 1 7.4178 7.6088 0.1416 23 1 9.1541 6.0488 0.7990 24 1 7.0926 5.2271 -0.1785 25 6 3.3590 1.2626 0.7211 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.8831 1.0771 -1.9563 30 1 1.2569 1.8013 -1.9564 31 1 2.9882 3.5006 -2.4703 32 1 2.1759 3.8628 -0.9288 33 1 4.6331 4.1214 -0.7212 34 1 4.8543 2.4316 -1.2354 35 1 1.9666 6.2797 1.8670 36 1 2.0582 5.1662 3.2526 37 1 3.2592 6.4680 3.0761 38 1 5.6906 6.8254 0.0953 39 1 4.1178 6.2135 -0.4700 40 1 4.1948 7.3096 0.9303 41 1 8.5423 6.7955 3.3632 42 1 4.0239 0.5683 0.2072 43 1 3.2107 0.9309 1.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339931809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:14 Heat of formation + Delta-G solvation = -102.041049 kcal Electronic energy + Delta-G solvation = -22681.996732 eV Core-core repulsion = 19533.556742 eV Total energy + Delta-G solvation = -3148.439990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78821 -39.32622 -37.50869 -37.02539 -34.55449 -32.14373 -31.90110 -31.05558 -28.00249 -27.32460 -27.12690 -24.21188 -23.50974 -22.93936 -21.59393 -19.45030 -18.90130 -17.96938 -17.37774 -17.04140 -16.72740 -16.39211 -15.95098 -15.80028 -15.38581 -15.01374 -14.62662 -14.50059 -14.16993 -13.87636 -13.76563 -13.64583 -13.25249 -13.14145 -13.03351 -12.96097 -12.82534 -12.55138 -12.52322 -12.01824 -11.85877 -11.79770 -11.49682 -11.45805 -11.39354 -11.23775 -10.77071 -10.41187 -10.14171 -9.41971 -8.30158 -6.37531 1.36082 1.40421 1.50998 1.70962 2.28223 2.32457 2.84623 3.04855 3.57352 3.75893 3.81600 4.12280 4.19002 4.25245 4.33887 4.43111 4.51791 4.55080 4.55974 4.57235 4.58478 4.64428 4.68061 4.71947 4.76188 4.82772 4.92242 4.94432 4.97766 5.04884 5.13713 5.15325 5.20978 5.27520 5.32402 5.42384 5.54547 5.79178 6.13579 6.36141 6.66562 6.73800 7.23127 7.35775 8.86148 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028000 B = 0.005965 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.772455 B = 4693.054845 C = 5002.121787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.068 3.932 4 H 0.083 0.917 5 C -0.130 4.130 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.106 4.106 9 H 0.098 0.902 10 C 0.514 3.486 11 O -0.581 6.581 12 N -0.592 5.592 13 C 0.095 3.905 14 C 0.227 3.773 15 H 0.070 0.930 16 C -0.162 4.162 17 C -0.534 4.534 18 H 0.035 0.965 19 C 0.021 3.979 20 N -0.943 5.943 21 Si 0.940 3.060 22 H -0.264 1.264 23 H -0.301 1.301 24 H -0.229 1.229 25 C -0.089 4.089 26 H 0.101 0.899 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.267 0.733 42 H 0.090 0.910 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 -7.329 -12.794 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.011 3.989 4 H 0.100 0.900 5 C -0.168 4.168 6 C -0.150 4.150 7 C -0.157 4.157 8 C -0.127 4.127 9 H 0.116 0.884 10 C 0.304 3.696 11 O -0.464 6.464 12 N -0.321 5.321 13 C -0.048 4.048 14 C 0.124 3.876 15 H 0.088 0.912 16 C -0.219 4.219 17 C -0.573 4.573 18 H 0.054 0.946 19 C -0.178 4.178 20 N -0.582 5.582 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.228 1.228 24 H -0.152 1.152 25 C -0.127 4.127 26 H 0.119 0.881 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.225 -7.570 -12.568 17.331 hybrid contribution 0.498 0.757 0.386 0.985 sum -8.727 -6.813 -12.182 16.462 Atomic orbital electron populations 1.22864 0.80369 1.03381 1.00029 1.87770 1.20755 1.28954 1.95246 1.22662 0.95633 0.84462 0.96149 0.89969 1.21950 1.01486 0.96946 0.96374 1.21474 0.95632 0.96530 1.01395 1.21802 0.98827 1.03009 0.92062 1.21356 0.98973 0.93998 0.98374 0.88354 1.20940 0.87735 0.82256 0.78660 1.90456 1.21276 1.77164 1.57507 1.47988 1.17357 1.14297 1.52473 1.21444 0.93986 0.93861 0.95505 1.19411 0.79769 0.94754 0.93631 0.91248 1.22417 1.00737 0.99543 0.99251 1.21393 0.98239 1.44434 0.93189 0.94641 1.25764 0.97190 0.93975 1.00850 1.70039 1.11012 1.45301 1.31886 0.85996 0.76649 0.80492 0.80285 1.19003 1.22839 1.15182 1.21300 0.96142 0.94606 1.00623 0.88075 0.94931 0.93414 0.90402 0.91526 0.89143 0.93833 0.90772 0.88349 0.92069 0.92748 0.91339 0.93315 0.91549 0.92573 0.92344 0.89173 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.82 113.37 1.23 1.90 16 2 O -0.41 -11.78 10.35 -148.98 -1.54 -13.32 16 3 C 0.07 1.99 2.32 30.60 0.07 2.06 16 4 H 0.08 2.85 4.77 -2.39 -0.01 2.84 16 5 C -0.13 -3.10 5.54 30.59 0.17 -2.93 16 6 C -0.11 -2.72 5.70 30.59 0.17 -2.54 16 7 C -0.12 -3.12 5.04 30.59 0.15 -2.96 16 8 C -0.11 -3.35 2.15 -11.54 -0.02 -3.38 16 9 H 0.10 3.26 7.32 -2.39 -0.02 3.24 16 10 C 0.51 19.43 5.57 87.66 0.49 19.92 16 11 O -0.58 -23.83 13.03 -3.02 -0.04 -23.87 16 12 N -0.59 -23.36 2.75 -826.78 -2.28 -25.64 16 13 C 0.09 3.55 9.37 127.77 1.20 4.75 16 14 C 0.23 9.33 1.38 44.25 0.06 9.39 16 15 H 0.07 2.72 3.40 -2.39 -0.01 2.71 16 16 C -0.16 -5.86 8.34 71.98 0.60 -5.26 16 17 C -0.53 -27.76 8.50 25.60 0.22 -27.54 16 18 H 0.04 2.12 7.49 -2.91 -0.02 2.09 16 19 C 0.02 1.11 5.45 84.66 0.46 1.57 16 20 N -0.94 -55.48 13.96 21.45 0.30 -55.18 16 21 Si 0.94 39.46 24.37 68.60 1.67 41.13 16 22 H -0.26 -10.56 6.87 99.48 0.68 -9.88 16 23 H -0.30 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.23 -8.24 6.53 99.48 0.65 -7.59 16 25 C -0.09 -2.65 4.84 30.59 0.15 -2.51 16 26 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.03 0.78 8.08 -2.39 -0.02 0.76 16 28 H 0.05 0.95 7.87 -2.38 -0.02 0.93 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.46 7.87 -2.38 -0.02 1.45 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.23 7.22 -2.39 -0.02 1.21 16 33 H 0.07 2.05 4.86 -2.39 -0.01 2.04 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 2.04 7.65 -2.39 -0.02 2.02 16 37 H 0.07 2.73 6.91 -2.39 -0.02 2.71 16 38 H 0.05 1.79 3.27 -2.39 -0.01 1.79 16 39 H 0.07 2.01 7.57 -2.39 -0.02 1.99 16 40 H 0.06 2.05 7.74 -2.39 -0.02 2.03 16 41 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 42 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -63.07 317.30 3.97 -59.10 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.91 Total: 25.30 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.94 Total: -7.53 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.98 Total: -80.82 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.58 Total: -37.19 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.67 Total: 41.13 kcal Total: -63.07 3.97 -59.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339931809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.943 kcal (2) G-P(sol) polarization free energy of solvation -63.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds