Wall clock time and date at job start Mon Mar 30 2020 00:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00386 * 2 1 4 4 H 1.09001 * 109.47189 * 29.99516 * 3 2 1 5 5 C 1.52999 * 109.46902 * 270.00080 * 3 2 1 6 6 C 1.53001 * 109.47315 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47322 * 59.99275 * 6 5 3 8 8 C 1.52998 * 109.47205 * 300.00814 * 7 6 5 9 9 H 1.09001 * 109.46720 * 299.99593 * 8 7 6 10 10 C 1.50701 * 109.47115 * 180.02562 * 8 7 6 11 11 O 1.21276 * 119.99887 * 251.84537 * 10 8 7 12 12 N 1.34780 * 120.00375 * 71.83893 * 10 8 7 13 13 C 1.46494 * 119.99972 * 184.51968 * 12 10 8 14 14 C 1.46495 * 119.99880 * 4.52565 * 12 10 8 15 15 H 1.09009 * 109.47133 * 356.86204 * 14 12 10 16 16 C 1.52998 * 109.47347 * 116.86296 * 14 12 10 17 17 C 1.50700 * 109.47337 * 236.86778 * 14 12 10 18 18 H 1.08001 * 119.99636 * 359.97438 * 17 14 12 19 19 C 1.37873 * 120.00286 * 180.02562 * 17 14 12 20 20 N 1.31514 * 119.99931 * 179.97438 * 19 17 14 21 21 Si 1.86798 * 120.00123 * 359.97438 * 19 17 14 22 22 H 1.48494 * 109.47019 * 90.00297 * 21 19 17 23 23 H 1.48503 * 109.47138 * 210.00326 * 21 19 17 24 24 H 1.48503 * 109.46926 * 330.00365 * 21 19 17 25 25 C 1.52993 * 109.47802 * 59.99563 * 8 7 6 26 26 H 1.09000 * 109.46908 * 60.00263 * 1 2 3 27 27 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47126 * 300.00518 * 1 2 3 29 29 H 1.08997 * 109.47588 * 59.99861 * 5 3 2 30 30 H 1.09001 * 109.46737 * 299.99711 * 5 3 2 31 31 H 1.08994 * 109.47599 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.46577 * 299.99949 * 6 5 3 33 33 H 1.09001 * 109.46949 * 60.00266 * 7 6 5 34 34 H 1.08996 * 109.47187 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.46896 * 95.39679 * 13 12 10 36 36 H 1.09002 * 109.47369 * 215.38884 * 13 12 10 37 37 H 1.09003 * 109.47558 * 335.39240 * 13 12 10 38 38 H 1.09001 * 109.47262 * 179.97438 * 16 14 12 39 39 H 1.09000 * 109.47496 * 300.00007 * 16 14 12 40 40 H 1.08998 * 109.46737 * 60.00166 * 16 14 12 41 41 H 0.97004 * 120.00156 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.47756 * 179.97438 * 25 8 7 43 43 H 1.09002 * 109.46645 * 59.99733 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 2.8407 3.1687 -1.4426 7 6 4.1894 3.1259 -0.7214 8 6 3.9819 2.6600 0.7210 9 1 3.3170 3.3542 1.2349 10 6 5.3103 2.6185 1.4315 11 8 5.8202 1.5519 1.7020 12 7 5.9317 3.7667 1.7662 13 6 7.2672 3.7284 2.3671 14 6 5.2717 5.0528 1.5293 15 1 4.3177 4.8850 1.0291 16 6 5.0297 5.7560 2.8664 17 6 6.1497 5.9154 0.6597 18 1 7.1041 5.5429 0.3182 19 6 5.7350 7.1805 0.3011 20 7 6.5015 7.9334 -0.4573 21 14 4.0844 7.8250 0.8924 22 1 4.2618 8.5213 2.1919 23 1 3.5371 8.7761 -0.1082 24 1 3.1423 6.6899 1.0635 25 6 3.3590 1.2626 0.7212 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.2569 1.8014 -1.9564 30 1 2.8829 1.0773 -1.9563 31 1 2.9880 3.5008 -2.4702 32 1 2.1758 3.8629 -0.9286 33 1 4.8543 2.4317 -1.2353 34 1 4.6330 4.1215 -0.7211 35 1 8.0195 3.8595 1.5893 36 1 7.3590 4.5301 3.1000 37 1 7.4169 2.7674 2.8592 38 1 4.5390 6.7131 2.6900 39 1 4.3946 5.1321 3.4953 40 1 5.9836 5.9238 3.3664 41 1 6.2096 8.8233 -0.7100 42 1 3.2116 0.9306 1.7488 43 1 4.0239 0.5685 0.2072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339931810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:17 Heat of formation + Delta-G solvation = -92.071679 kcal Electronic energy + Delta-G solvation = -22325.896297 eV Core-core repulsion = 19177.888611 eV Total energy + Delta-G solvation = -3148.007686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02383 -38.45229 -36.03323 -35.78015 -32.60158 -30.94301 -30.13665 -29.97265 -26.54277 -26.42573 -25.28193 -22.93666 -22.18622 -21.43709 -19.93313 -18.22172 -17.07736 -16.70367 -16.03316 -15.48420 -15.27422 -15.07199 -14.92047 -14.24726 -14.12822 -13.58184 -13.33632 -13.09995 -12.92214 -12.48995 -12.35768 -12.25237 -11.88638 -11.78873 -11.68567 -11.40832 -11.35448 -11.11551 -10.90057 -10.69240 -10.47144 -10.37655 -10.27371 -10.15313 -9.81317 -9.52956 -9.41715 -8.97321 -8.75221 -7.75125 -6.26452 -4.28624 3.11325 3.18849 3.24876 3.26047 3.58367 3.97909 4.20180 4.79897 4.85031 5.03370 5.07340 5.18794 5.23147 5.31886 5.35746 5.43966 5.47667 5.55272 5.60954 5.68203 5.79444 5.98707 6.09872 6.12517 6.14211 6.16273 6.22927 6.24781 6.34461 6.35684 6.43114 6.50549 6.57168 6.60444 6.76663 6.87502 7.22147 7.25723 7.51902 8.05980 8.45384 8.76491 8.88220 9.33303 10.86044 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.006516 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.586783 B = 4296.054252 C = 5021.937471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.140 4.140 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.100 4.100 9 H 0.090 0.910 10 C 0.517 3.483 11 O -0.568 6.568 12 N -0.585 5.585 13 C 0.095 3.905 14 C 0.223 3.777 15 H 0.055 0.945 16 C -0.167 4.167 17 C -0.530 4.530 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.889 5.889 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.265 1.265 25 C -0.093 4.093 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.033 0.967 40 H 0.059 0.941 41 H 0.267 0.733 42 H 0.069 0.931 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 -8.467 1.098 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.032 3.968 4 H 0.077 0.923 5 C -0.177 4.177 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.121 4.121 9 H 0.108 0.892 10 C 0.304 3.696 11 O -0.448 6.448 12 N -0.315 5.315 13 C -0.048 4.048 14 C 0.120 3.880 15 H 0.073 0.927 16 C -0.225 4.225 17 C -0.568 4.568 18 H 0.100 0.900 19 C -0.125 4.125 20 N -0.526 5.526 21 Si 0.710 3.290 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.190 1.190 25 C -0.131 4.131 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.135 -8.975 1.151 13.587 hybrid contribution -1.051 1.016 0.289 1.490 sum -11.186 -7.959 1.440 13.804 Atomic orbital electron populations 1.22751 0.81642 1.02352 0.99795 1.87913 1.19150 1.28267 1.95080 1.22187 0.94957 0.83907 0.95725 0.92286 1.22056 1.01056 0.97783 0.96854 1.21476 0.96731 0.95818 1.01130 1.21683 0.97483 1.04181 0.92456 1.21188 0.95169 0.97894 0.97835 0.89162 1.20379 0.86740 0.83594 0.78847 1.90602 1.68108 1.29757 1.56376 1.47858 1.17417 1.06681 1.59565 1.21402 0.84047 1.01372 0.97973 1.19496 0.94635 0.80757 0.93084 0.92706 1.22514 1.00984 0.99660 0.99311 1.21137 1.06096 0.98961 1.30571 0.90009 1.24882 0.96754 0.96419 0.94493 1.69870 1.37050 1.09999 1.35675 0.86982 0.84827 0.79258 0.77942 1.20341 1.22063 1.19037 1.21339 0.94423 0.96274 1.01078 0.94233 0.89943 0.94221 0.92213 0.91019 0.91119 0.91864 0.91543 0.88261 0.92949 0.91654 0.91825 0.93118 0.94748 0.92219 0.92302 0.91249 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.40 16 2 O -0.39 -5.24 10.35 -35.23 -0.36 -5.60 16 3 C 0.09 1.20 2.61 -26.73 -0.07 1.13 16 4 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 5 C -0.14 -1.76 5.54 -26.73 -0.15 -1.91 16 6 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 7 C -0.12 -1.98 4.85 -26.73 -0.13 -2.11 16 8 C -0.10 -1.68 1.66 -91.78 -0.15 -1.83 16 9 H 0.09 1.46 6.97 -51.93 -0.36 1.10 16 10 C 0.52 10.33 6.91 -10.98 -0.08 10.26 16 11 O -0.57 -12.57 15.46 5.56 0.09 -12.48 16 12 N -0.59 -11.94 2.75 -175.27 -0.48 -12.42 16 13 C 0.10 1.80 9.71 59.84 0.58 2.38 16 14 C 0.22 4.75 1.36 -69.09 -0.09 4.66 16 15 H 0.06 1.15 3.68 -51.92 -0.19 0.96 16 16 C -0.17 -3.31 8.70 37.16 0.32 -2.99 16 17 C -0.53 -13.36 8.46 -34.44 -0.29 -13.65 16 18 H 0.08 2.31 7.56 -52.49 -0.40 1.91 16 19 C 0.08 2.04 5.45 -17.82 -0.10 1.95 16 20 N -0.89 -25.15 13.96 55.43 0.77 -24.37 16 21 Si 0.88 19.74 24.37 -169.99 -4.14 15.59 16 22 H -0.28 -6.12 6.87 56.52 0.39 -5.73 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -5.51 6.53 56.52 0.37 -5.15 16 25 C -0.09 -1.45 4.23 -26.73 -0.11 -1.57 16 26 H 0.04 0.35 7.87 -51.93 -0.41 -0.06 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.35 8.09 -51.92 -0.42 -0.07 16 29 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.90 5.97 -51.93 -0.31 1.59 16 35 H 0.05 1.02 7.87 -51.93 -0.41 0.61 16 36 H 0.06 1.16 6.61 -51.93 -0.34 0.81 16 37 H 0.06 1.15 7.22 -51.93 -0.37 0.78 16 38 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 1.16 6.80 -51.93 -0.35 0.80 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.35 7.97 -51.93 -0.41 0.94 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -29.06 324.45 -5.68 -34.74 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.10 Total: 3.64 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 0.67 Total: -3.99 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.29 Total: -36.80 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.28 Total: -18.08 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.14 Total: 15.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.06 -5.68 -34.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339931810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.331 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds