Wall clock time and date at job start Mon Mar 30 2020 00:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00386 * 2 1 4 4 H 1.09001 * 109.47189 * 29.99516 * 3 2 1 5 5 C 1.52999 * 109.46902 * 270.00080 * 3 2 1 6 6 C 1.53001 * 109.47315 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47322 * 59.99275 * 6 5 3 8 8 C 1.52998 * 109.47205 * 300.00814 * 7 6 5 9 9 H 1.09001 * 109.46720 * 299.99593 * 8 7 6 10 10 C 1.50701 * 109.47115 * 180.02562 * 8 7 6 11 11 O 1.21276 * 119.99887 * 251.84537 * 10 8 7 12 12 N 1.34780 * 120.00375 * 71.83893 * 10 8 7 13 13 C 1.46494 * 119.99972 * 184.51968 * 12 10 8 14 14 C 1.46495 * 119.99880 * 4.52565 * 12 10 8 15 15 H 1.09009 * 109.47133 * 356.86204 * 14 12 10 16 16 C 1.52998 * 109.47347 * 116.86296 * 14 12 10 17 17 C 1.50700 * 109.47337 * 236.86778 * 14 12 10 18 18 H 1.08001 * 119.99636 * 359.97438 * 17 14 12 19 19 C 1.37873 * 120.00286 * 180.02562 * 17 14 12 20 20 N 1.31514 * 119.99931 * 179.97438 * 19 17 14 21 21 Si 1.86798 * 120.00123 * 359.97438 * 19 17 14 22 22 H 1.48494 * 109.47019 * 90.00297 * 21 19 17 23 23 H 1.48503 * 109.47138 * 210.00326 * 21 19 17 24 24 H 1.48503 * 109.46926 * 330.00365 * 21 19 17 25 25 C 1.52993 * 109.47802 * 59.99563 * 8 7 6 26 26 H 1.09000 * 109.46908 * 60.00263 * 1 2 3 27 27 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47126 * 300.00518 * 1 2 3 29 29 H 1.08997 * 109.47588 * 59.99861 * 5 3 2 30 30 H 1.09001 * 109.46737 * 299.99711 * 5 3 2 31 31 H 1.08994 * 109.47599 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.46577 * 299.99949 * 6 5 3 33 33 H 1.09001 * 109.46949 * 60.00266 * 7 6 5 34 34 H 1.08996 * 109.47187 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.46896 * 95.39679 * 13 12 10 36 36 H 1.09002 * 109.47369 * 215.38884 * 13 12 10 37 37 H 1.09003 * 109.47558 * 335.39240 * 13 12 10 38 38 H 1.09001 * 109.47262 * 179.97438 * 16 14 12 39 39 H 1.09000 * 109.47496 * 300.00007 * 16 14 12 40 40 H 1.08998 * 109.46737 * 60.00166 * 16 14 12 41 41 H 0.97004 * 120.00156 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.47756 * 179.97438 * 25 8 7 43 43 H 1.09002 * 109.46645 * 59.99733 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 2.8407 3.1687 -1.4426 7 6 4.1894 3.1259 -0.7214 8 6 3.9819 2.6600 0.7210 9 1 3.3170 3.3542 1.2349 10 6 5.3103 2.6185 1.4315 11 8 5.8202 1.5519 1.7020 12 7 5.9317 3.7667 1.7662 13 6 7.2672 3.7284 2.3671 14 6 5.2717 5.0528 1.5293 15 1 4.3177 4.8850 1.0291 16 6 5.0297 5.7560 2.8664 17 6 6.1497 5.9154 0.6597 18 1 7.1041 5.5429 0.3182 19 6 5.7350 7.1805 0.3011 20 7 6.5015 7.9334 -0.4573 21 14 4.0844 7.8250 0.8924 22 1 4.2618 8.5213 2.1919 23 1 3.5371 8.7761 -0.1082 24 1 3.1423 6.6899 1.0635 25 6 3.3590 1.2626 0.7212 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.2569 1.8014 -1.9564 30 1 2.8829 1.0773 -1.9563 31 1 2.9880 3.5008 -2.4702 32 1 2.1758 3.8629 -0.9286 33 1 4.8543 2.4317 -1.2353 34 1 4.6330 4.1215 -0.7211 35 1 8.0195 3.8595 1.5893 36 1 7.3590 4.5301 3.1000 37 1 7.4169 2.7674 2.8592 38 1 4.5390 6.7131 2.6900 39 1 4.3946 5.1321 3.4953 40 1 5.9836 5.9238 3.3664 41 1 6.2096 8.8233 -0.7100 42 1 3.2116 0.9306 1.7488 43 1 4.0239 0.5685 0.2072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339931810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:16 Heat of formation + Delta-G solvation = -110.598113 kcal Electronic energy + Delta-G solvation = -22326.699663 eV Core-core repulsion = 19177.888611 eV Total energy + Delta-G solvation = -3148.811052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47684 -39.63791 -37.51545 -37.15557 -34.53546 -32.18464 -31.86543 -31.10843 -28.00665 -27.30928 -27.12954 -24.32267 -23.36127 -23.02902 -21.10532 -19.77424 -18.86696 -18.18748 -17.35981 -16.94608 -16.61243 -16.41305 -16.00663 -15.74344 -15.43853 -14.97909 -14.70190 -14.65651 -14.25529 -14.06802 -13.85955 -13.56291 -13.35020 -13.12631 -13.05795 -12.94190 -12.57220 -12.51628 -12.29601 -12.07758 -11.93759 -11.64399 -11.51300 -11.45382 -11.41987 -11.30573 -10.80305 -10.64418 -10.32528 -9.44507 -8.27931 -6.34833 1.36426 1.40022 1.50790 1.66281 2.21399 2.33149 2.84044 3.06698 3.50187 3.71710 3.92394 4.04912 4.14857 4.21061 4.28152 4.34729 4.44214 4.46945 4.55092 4.57669 4.58875 4.61420 4.65450 4.66091 4.75455 4.88614 4.90438 4.94962 4.96919 5.06737 5.14267 5.16864 5.26444 5.29176 5.35587 5.42973 5.49893 5.77175 6.14944 6.32617 6.68665 6.71557 7.21578 7.34890 8.88301 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.006516 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.586783 B = 4296.054252 C = 5021.937471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.094 3.906 4 H 0.077 0.923 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.117 4.117 8 C -0.094 4.094 9 H 0.107 0.893 10 C 0.510 3.490 11 O -0.593 6.593 12 N -0.592 5.592 13 C 0.095 3.905 14 C 0.227 3.773 15 H 0.068 0.932 16 C -0.165 4.165 17 C -0.524 4.524 18 H 0.035 0.965 19 C 0.025 3.975 20 N -0.942 5.942 21 Si 0.937 3.063 22 H -0.267 1.267 23 H -0.299 1.299 24 H -0.231 1.231 25 C -0.087 4.087 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.267 0.733 42 H 0.064 0.936 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.889 -8.723 1.939 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.037 3.963 4 H 0.095 0.905 5 C -0.171 4.171 6 C -0.146 4.146 7 C -0.155 4.155 8 C -0.115 4.115 9 H 0.125 0.875 10 C 0.300 3.700 11 O -0.475 6.475 12 N -0.321 5.321 13 C -0.048 4.048 14 C 0.125 3.875 15 H 0.086 0.914 16 C -0.223 4.223 17 C -0.563 4.563 18 H 0.054 0.946 19 C -0.174 4.174 20 N -0.581 5.581 21 Si 0.763 3.237 22 H -0.193 1.193 23 H -0.227 1.227 24 H -0.154 1.154 25 C -0.125 4.125 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.473 -9.258 2.007 16.470 hybrid contribution 0.111 1.008 -0.003 1.014 sum -13.362 -8.250 2.004 15.831 Atomic orbital electron populations 1.22988 0.79590 1.03741 1.00922 1.87882 1.21413 1.28241 1.95225 1.22101 0.93806 0.84520 0.95899 0.90465 1.22000 1.01915 0.96620 0.96606 1.21456 0.94921 0.96955 1.01284 1.21607 0.99200 1.01963 0.92688 1.21205 0.93533 0.99229 0.97538 0.87514 1.21006 0.87779 0.82940 0.78322 1.90584 1.69101 1.30530 1.57313 1.47952 1.17814 1.06680 1.59657 1.21423 0.83407 1.02237 0.97722 1.19397 0.94114 0.80464 0.93559 0.91425 1.22448 1.01685 0.99780 0.98415 1.21242 1.04831 0.99491 1.30699 0.94637 1.25685 1.00628 0.96575 0.94500 1.70029 1.39566 1.10602 1.37894 0.86049 0.80706 0.79547 0.77442 1.19347 1.22690 1.15405 1.21248 0.95580 0.94720 1.00960 0.92909 0.88602 0.93208 0.89814 0.92008 0.90297 0.90539 0.92776 0.91130 0.94533 0.90426 0.91088 0.93238 0.91783 0.92350 0.92375 0.91725 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.41 -10.04 10.35 -148.98 -1.54 -11.58 16 3 C 0.09 2.25 2.61 30.60 0.08 2.33 16 4 H 0.08 1.58 7.79 -2.39 -0.02 1.57 16 5 C -0.13 -2.98 5.54 30.59 0.17 -2.81 16 6 C -0.11 -2.67 5.92 30.60 0.18 -2.49 16 7 C -0.12 -3.75 4.85 30.59 0.15 -3.60 16 8 C -0.09 -3.03 1.66 -11.54 -0.02 -3.05 16 9 H 0.11 3.10 6.97 -2.39 -0.02 3.08 16 10 C 0.51 20.18 6.91 87.66 0.61 20.79 16 11 O -0.59 -26.34 15.46 -3.02 -0.05 -26.39 16 12 N -0.59 -23.90 2.75 -826.81 -2.28 -26.18 16 13 C 0.09 3.63 9.71 127.77 1.24 4.87 16 14 C 0.23 9.39 1.36 44.25 0.06 9.45 16 15 H 0.07 2.65 3.68 -2.38 -0.01 2.64 16 16 C -0.17 -6.08 8.70 71.98 0.63 -5.45 16 17 C -0.52 -26.86 8.46 25.60 0.22 -26.64 16 18 H 0.04 2.10 7.56 -2.91 -0.02 2.08 16 19 C 0.02 1.31 5.45 84.65 0.46 1.77 16 20 N -0.94 -54.69 13.96 21.45 0.30 -54.39 16 21 Si 0.94 39.11 24.37 68.60 1.67 40.78 16 22 H -0.27 -10.76 6.87 99.48 0.68 -10.08 16 23 H -0.30 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.23 -8.31 6.53 99.48 0.65 -7.66 16 25 C -0.09 -2.59 4.23 30.59 0.13 -2.46 16 26 H 0.05 0.72 7.87 -2.39 -0.02 0.70 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 0.71 8.09 -2.38 -0.02 0.69 16 29 H 0.08 1.51 7.87 -2.39 -0.02 1.49 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.68 5.97 -2.39 -0.01 2.67 16 35 H 0.04 1.48 7.87 -2.39 -0.02 1.46 16 36 H 0.08 2.73 6.61 -2.39 -0.02 2.72 16 37 H 0.07 2.59 7.22 -2.39 -0.02 2.57 16 38 H 0.05 1.84 3.27 -2.39 -0.01 1.83 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.14 6.80 -2.39 -0.02 2.12 16 41 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.06 1.97 7.97 -2.39 -0.02 1.95 16 Total: -1.00 -64.00 324.45 4.13 -59.86 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.90 Total: 23.57 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 5.13 Total: -5.67 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.98 Total: -80.57 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.59 Total: -37.97 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.67 Total: 40.78 kcal Total: -64.00 4.13 -59.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339931810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.737 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds