Wall clock time and date at job start Mon Mar 30 2020 01:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47187 * 2 1 4 4 C 1.42901 * 113.99779 * 185.61682 * 3 2 1 5 5 C 1.50704 * 110.01503 * 185.45670 * 4 3 2 6 6 O 1.21276 * 119.99660 * 4.38775 * 5 4 3 7 7 N 1.34775 * 120.00065 * 184.38790 * 5 4 3 8 8 C 1.46493 * 120.00124 * 175.05560 * 7 5 4 9 9 C 1.52998 * 109.47215 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.47225 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46872 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00494 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99632 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99858 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00191 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47399 * 89.99498 * 15 13 11 17 17 H 1.48500 * 109.47434 * 209.99668 * 15 13 11 18 18 H 1.48502 * 109.46834 * 329.99516 * 15 13 11 19 19 C 1.54264 * 110.03276 * 306.84420 * 4 3 2 20 20 C 1.54970 * 104.15856 * 95.75544 * 19 4 3 21 21 C 1.54890 * 102.77419 * 37.88837 * 20 19 4 22 22 C 1.53876 * 110.03615 * 64.06431 * 4 3 2 23 23 H 1.09007 * 109.47465 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46999 * 299.99849 * 1 2 3 25 25 H 1.08999 * 109.47353 * 59.99636 * 1 2 3 26 26 H 1.09000 * 109.46831 * 239.99360 * 2 1 3 27 27 H 1.09002 * 109.47081 * 119.99926 * 2 1 3 28 28 H 0.97000 * 119.99642 * 355.05574 * 7 5 4 29 29 H 1.08997 * 109.47076 * 60.00118 * 8 7 5 30 30 H 1.08998 * 109.47168 * 300.00038 * 8 7 5 31 31 H 1.09009 * 109.47275 * 299.99718 * 9 8 7 32 32 H 1.08996 * 109.47520 * 59.99414 * 9 8 7 33 33 H 1.08998 * 109.47084 * 299.99653 * 10 9 8 34 34 H 1.08997 * 109.47149 * 59.99728 * 10 9 8 35 35 H 0.97000 * 119.99969 * 180.02562 * 14 13 11 36 36 H 1.08995 * 110.48859 * 214.40170 * 19 4 3 37 37 H 1.08994 * 110.49083 * 337.05054 * 19 4 3 38 38 H 1.09002 * 110.72320 * 279.57610 * 20 19 4 39 39 H 1.08997 * 110.76350 * 156.22064 * 20 19 4 40 40 H 1.09000 * 110.48391 * 203.40236 * 21 20 19 41 41 H 1.09006 * 110.48676 * 80.76287 * 21 20 19 42 42 H 1.09008 * 110.02747 * 359.95089 * 22 4 3 43 43 H 1.08996 * 110.03334 * 121.37494 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4250 1.4621 -0.1278 5 6 3.8408 2.9035 0.0162 6 8 3.0149 3.7484 0.2896 7 7 5.1305 3.2534 -0.1588 8 6 5.5171 4.6661 -0.1262 9 6 7.0257 4.7873 -0.3503 10 6 7.4295 6.2627 -0.3156 11 6 8.9155 6.3820 -0.5357 12 1 9.5123 5.4944 -0.6858 13 6 9.5132 7.6245 -0.5465 14 7 10.8102 7.7287 -0.7381 15 14 8.4811 9.1598 -0.2877 16 1 8.4198 9.4765 1.1618 17 1 9.0952 10.2980 -1.0175 18 1 7.1078 8.9254 -0.8017 19 6 4.1236 0.6010 0.9446 20 6 4.4391 -0.7298 0.2158 21 6 4.8355 -0.2566 -1.2048 22 6 3.8771 0.9170 -1.4939 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8028 2.5699 -0.3063 29 1 5.2581 5.0913 0.8434 30 1 4.9888 5.2055 -0.9123 31 1 7.5543 4.2478 0.4357 32 1 7.2843 4.3621 -1.3199 33 1 6.9010 6.8026 -1.1012 34 1 7.1709 6.6875 0.6543 35 1 11.2307 8.6027 -0.7454 36 1 5.0437 1.0801 1.2788 37 1 3.4556 0.4258 1.7879 38 1 3.5560 -1.3676 0.1780 39 1 5.2697 -1.2463 0.6968 40 1 4.6871 -1.0576 -1.9289 41 1 5.8709 0.0842 -1.2183 42 1 3.0144 0.5640 -2.0591 43 1 4.3972 1.6950 -2.0527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340734786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:13 Heat of formation + Delta-G solvation = -106.618441 kcal Electronic energy + Delta-G solvation = -21101.351852 eV Core-core repulsion = 17952.713371 eV Total energy + Delta-G solvation = -3148.638481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.82479 -38.45522 -35.94729 -35.37291 -33.26517 -31.73450 -31.39007 -29.26558 -28.67588 -26.76512 -23.60667 -22.95252 -21.62279 -21.09374 -20.56401 -19.55906 -17.65908 -17.06969 -16.67745 -15.93180 -15.56353 -15.42062 -15.00563 -14.35039 -14.30849 -13.94016 -13.87912 -13.57707 -12.83168 -12.73530 -12.64504 -12.39023 -12.03155 -12.00889 -11.92868 -11.62856 -11.55303 -11.41086 -11.18986 -11.08808 -10.89933 -10.79361 -10.15535 -9.95070 -9.76923 -9.72929 -9.43184 -9.23689 -8.86831 -8.56285 -6.07247 -4.06000 2.63558 2.84542 3.31166 3.38786 3.43221 3.78224 4.15586 4.23868 4.43932 4.51710 4.75434 4.77955 4.87610 4.99440 5.07108 5.07586 5.10694 5.24734 5.26989 5.35657 5.47072 5.53484 5.54269 5.62084 5.64367 5.68229 5.74699 5.85205 5.87324 5.93481 6.00096 6.32997 6.42965 6.66538 6.77399 6.95308 7.21726 7.35134 7.61361 7.75548 8.31344 8.49258 8.96439 9.55100 11.05971 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.003458 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.109015 B = 8094.800261 C = 8647.215392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.100 3.900 5 C 0.524 3.476 6 O -0.523 6.523 7 N -0.723 5.723 8 C 0.115 3.885 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C -0.149 4.149 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.150 4.150 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.399 0.601 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.986 -20.313 0.532 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.269 6.269 4 C 0.057 3.943 5 C 0.309 3.691 6 O -0.398 6.398 7 N -0.376 5.376 8 C -0.007 4.007 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.187 4.187 20 C -0.167 4.167 21 C -0.163 4.163 22 C -0.188 4.188 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.234 0.766 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.583 -19.371 0.714 25.510 hybrid contribution 0.127 0.367 0.023 0.389 sum -16.456 -19.004 0.737 25.149 Atomic orbital electron populations 1.21754 0.93715 1.02050 1.03377 1.22639 0.95324 0.84270 1.00348 1.88084 1.18638 1.26080 1.94137 1.22021 0.83247 0.93315 0.95718 1.19889 0.82794 0.89145 0.77318 1.90713 1.51248 1.51808 1.45996 1.46036 1.07934 1.09991 1.73620 1.21681 0.97355 0.79631 1.02049 1.21707 0.90945 1.00875 1.01530 1.19506 0.97616 0.91107 0.96689 1.21091 0.91003 0.94372 1.49537 0.91005 1.25027 0.94810 0.99129 0.94498 1.69911 1.09618 1.24394 1.50283 0.86777 0.81143 0.82786 0.78613 1.20229 1.21369 1.18875 1.23057 1.01609 0.96055 0.98009 1.22704 1.01859 0.96532 0.95651 1.22415 0.99642 0.97407 0.96849 1.22848 1.00687 0.99092 0.96216 0.91138 0.91748 0.91829 0.92930 0.92935 0.76647 0.91617 0.91722 0.92087 0.92062 0.96282 0.96706 0.92687 0.89727 0.89851 0.90970 0.90561 0.90895 0.90650 0.89931 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.05 0.45 4.80 37.16 0.18 0.63 16 3 O -0.35 -4.64 9.53 -54.80 -0.52 -5.16 16 4 C 0.10 1.18 1.05 -90.65 -0.09 1.09 16 5 C 0.52 8.10 6.37 -10.98 -0.07 8.03 16 6 O -0.52 -10.48 16.54 -14.01 -0.23 -10.71 16 7 N -0.72 -10.08 4.89 -60.30 -0.29 -10.38 16 8 C 0.12 1.92 5.68 -4.05 -0.02 1.90 16 9 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 10 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 11 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 12 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 15 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 19 C -0.15 -1.38 5.33 -25.03 -0.13 -1.51 16 20 C -0.13 -0.88 6.33 -24.69 -0.16 -1.03 16 21 C -0.13 -0.88 6.83 -25.08 -0.17 -1.05 16 22 C -0.15 -1.41 5.37 -25.62 -0.14 -1.55 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.40 6.06 -51.93 -0.31 0.09 16 27 H 0.05 0.41 5.97 -51.93 -0.31 0.10 16 28 H 0.40 4.47 7.98 -40.82 -0.33 4.15 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 34 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.08 0.77 7.39 -51.93 -0.38 0.39 16 37 H 0.08 0.78 7.21 -51.93 -0.37 0.40 16 38 H 0.07 0.43 6.05 -51.93 -0.31 0.12 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.75 6.73 -51.92 -0.35 0.40 16 43 H 0.08 0.82 7.40 -51.93 -0.38 0.43 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -33.73 336.91 -8.11 -41.84 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.34 Total: -0.81 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.91 Total: -10.03 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.48 Total: -37.30 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.75 Total: -15.87 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.73 -8.11 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340734786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.775 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds