Wall clock time and date at job start Mon Mar 30 2020 01:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47187 * 2 1 4 4 C 1.42901 * 113.99779 * 185.61682 * 3 2 1 5 5 C 1.50704 * 110.01503 * 185.45670 * 4 3 2 6 6 O 1.21276 * 119.99660 * 4.38775 * 5 4 3 7 7 N 1.34775 * 120.00065 * 184.38790 * 5 4 3 8 8 C 1.46493 * 120.00124 * 175.05560 * 7 5 4 9 9 C 1.52998 * 109.47215 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.47225 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46872 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00494 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99632 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99858 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00191 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47399 * 89.99498 * 15 13 11 17 17 H 1.48500 * 109.47434 * 209.99668 * 15 13 11 18 18 H 1.48502 * 109.46834 * 329.99516 * 15 13 11 19 19 C 1.54264 * 110.03276 * 306.84420 * 4 3 2 20 20 C 1.54970 * 104.15856 * 95.75544 * 19 4 3 21 21 C 1.54890 * 102.77419 * 37.88837 * 20 19 4 22 22 C 1.53876 * 110.03615 * 64.06431 * 4 3 2 23 23 H 1.09007 * 109.47465 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46999 * 299.99849 * 1 2 3 25 25 H 1.08999 * 109.47353 * 59.99636 * 1 2 3 26 26 H 1.09000 * 109.46831 * 239.99360 * 2 1 3 27 27 H 1.09002 * 109.47081 * 119.99926 * 2 1 3 28 28 H 0.97000 * 119.99642 * 355.05574 * 7 5 4 29 29 H 1.08997 * 109.47076 * 60.00118 * 8 7 5 30 30 H 1.08998 * 109.47168 * 300.00038 * 8 7 5 31 31 H 1.09009 * 109.47275 * 299.99718 * 9 8 7 32 32 H 1.08996 * 109.47520 * 59.99414 * 9 8 7 33 33 H 1.08998 * 109.47084 * 299.99653 * 10 9 8 34 34 H 1.08997 * 109.47149 * 59.99728 * 10 9 8 35 35 H 0.97000 * 119.99969 * 180.02562 * 14 13 11 36 36 H 1.08995 * 110.48859 * 214.40170 * 19 4 3 37 37 H 1.08994 * 110.49083 * 337.05054 * 19 4 3 38 38 H 1.09002 * 110.72320 * 279.57610 * 20 19 4 39 39 H 1.08997 * 110.76350 * 156.22064 * 20 19 4 40 40 H 1.09000 * 110.48391 * 203.40236 * 21 20 19 41 41 H 1.09006 * 110.48676 * 80.76287 * 21 20 19 42 42 H 1.09008 * 110.02747 * 359.95089 * 22 4 3 43 43 H 1.08996 * 110.03334 * 121.37494 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4250 1.4621 -0.1278 5 6 3.8408 2.9035 0.0162 6 8 3.0149 3.7484 0.2896 7 7 5.1305 3.2534 -0.1588 8 6 5.5171 4.6661 -0.1262 9 6 7.0257 4.7873 -0.3503 10 6 7.4295 6.2627 -0.3156 11 6 8.9155 6.3820 -0.5357 12 1 9.5123 5.4944 -0.6858 13 6 9.5132 7.6245 -0.5465 14 7 10.8102 7.7287 -0.7381 15 14 8.4811 9.1598 -0.2877 16 1 8.4198 9.4765 1.1618 17 1 9.0952 10.2980 -1.0175 18 1 7.1078 8.9254 -0.8017 19 6 4.1236 0.6010 0.9446 20 6 4.4391 -0.7298 0.2158 21 6 4.8355 -0.2566 -1.2048 22 6 3.8771 0.9170 -1.4939 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8028 2.5699 -0.3063 29 1 5.2581 5.0913 0.8434 30 1 4.9888 5.2055 -0.9123 31 1 7.5543 4.2478 0.4357 32 1 7.2843 4.3621 -1.3199 33 1 6.9010 6.8026 -1.1012 34 1 7.1709 6.6875 0.6543 35 1 11.2307 8.6027 -0.7454 36 1 5.0437 1.0801 1.2788 37 1 3.4556 0.4258 1.7879 38 1 3.5560 -1.3676 0.1780 39 1 5.2697 -1.2463 0.6968 40 1 4.6871 -1.0576 -1.9289 41 1 5.8709 0.0842 -1.2183 42 1 3.0144 0.5640 -2.0591 43 1 4.3972 1.6950 -2.0527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340734786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:13 Heat of formation + Delta-G solvation = -128.570292 kcal Electronic energy + Delta-G solvation = -21102.303756 eV Core-core repulsion = 17952.713371 eV Total energy + Delta-G solvation = -3149.590384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.78476 -39.55225 -37.10293 -36.50152 -35.09713 -33.30225 -32.32926 -29.94646 -29.83061 -28.21874 -24.84210 -24.08002 -22.60734 -22.18399 -21.75370 -20.65347 -19.08071 -18.41638 -17.95980 -16.81517 -16.75631 -16.60514 -16.23249 -15.86143 -15.30424 -15.13976 -14.94829 -14.78313 -14.24241 -13.86423 -13.77146 -13.46762 -13.34598 -13.20836 -12.78210 -12.73128 -12.65482 -12.33389 -12.15223 -12.01477 -11.95490 -11.86726 -11.78029 -11.61110 -11.36807 -11.33572 -10.76500 -10.71151 -10.50097 -10.15807 -8.29743 -6.33325 1.36418 1.38180 1.45905 1.49726 1.79633 2.35910 2.90927 3.06159 3.42811 3.52452 3.59770 4.04931 4.11021 4.15638 4.17155 4.20640 4.34850 4.40523 4.41967 4.47412 4.48636 4.68014 4.77245 4.81327 4.86142 4.87854 4.95553 5.02437 5.02875 5.06943 5.18388 5.22177 5.26162 5.32606 5.39695 5.46987 5.54511 5.64472 6.14474 6.27106 6.51386 6.74674 7.14129 7.31539 8.86591 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.003458 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.109015 B = 8094.800261 C = 8647.215392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.387 6.387 4 C 0.101 3.899 5 C 0.519 3.481 6 O -0.576 6.576 7 N -0.709 5.709 8 C 0.126 3.874 9 C -0.098 4.098 10 C -0.013 4.013 11 C -0.529 4.529 12 H 0.040 0.960 13 C 0.006 3.994 14 N -0.950 5.950 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.249 1.249 19 C -0.148 4.148 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.148 4.148 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.415 0.585 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.038 -22.023 0.513 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.306 6.306 4 C 0.058 3.942 5 C 0.305 3.695 6 O -0.455 6.455 7 N -0.363 5.363 8 C 0.003 3.997 9 C -0.136 4.136 10 C -0.051 4.051 11 C -0.567 4.567 12 H 0.058 0.942 13 C -0.191 4.191 14 N -0.590 5.590 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.173 1.173 19 C -0.186 4.186 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.186 4.186 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.252 0.748 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.620 -21.131 0.689 27.522 hybrid contribution 0.476 0.841 0.022 0.966 sum -17.144 -20.290 0.711 26.573 Atomic orbital electron populations 1.21804 0.93240 1.03525 1.02323 1.22889 0.95772 0.82698 1.01717 1.88040 1.19345 1.28752 1.94505 1.22075 0.83299 0.90813 0.98049 1.20689 0.82307 0.90628 0.75833 1.90680 1.52621 1.53681 1.48535 1.45828 1.08248 1.09298 1.72879 1.21351 0.95837 0.81186 1.01341 1.21477 0.92080 0.97860 1.02212 1.19472 0.94452 0.94435 0.96713 1.21452 0.93294 0.93333 1.48632 0.94186 1.25955 0.95941 1.02804 0.94416 1.70051 1.11581 1.25388 1.52024 0.85727 0.79954 0.78452 0.78959 1.19305 1.21013 1.17268 1.23080 1.01100 0.97029 0.97428 1.22704 1.02990 0.95167 0.95005 1.22432 0.99139 0.96763 0.97438 1.22849 1.01355 0.99769 0.94604 0.88363 0.92963 0.92736 0.91256 0.91645 0.74820 0.92451 0.92429 0.91479 0.91399 0.96139 0.96302 0.92502 0.89818 0.90129 0.89800 0.88968 0.89077 0.90142 0.89546 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.04 0.72 4.80 71.98 0.35 1.07 16 3 O -0.39 -9.99 9.53 -130.27 -1.24 -11.24 16 4 C 0.10 2.26 1.05 -10.81 -0.01 2.25 16 5 C 0.52 15.90 6.37 87.66 0.56 16.45 16 6 O -0.58 -23.56 16.54 15.69 0.26 -23.31 16 7 N -0.71 -19.13 4.89 -463.09 -2.26 -21.39 16 8 C 0.13 4.11 5.68 86.38 0.49 4.61 16 9 C -0.10 -3.52 5.27 30.60 0.16 -3.36 16 10 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 11 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 12 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 13 C 0.01 0.34 5.47 84.66 0.46 0.80 16 14 N -0.95 -59.17 13.96 21.45 0.30 -58.88 16 15 Si 0.95 44.53 27.47 68.60 1.88 46.42 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.25 -11.03 6.54 99.48 0.65 -10.37 16 19 C -0.15 -2.44 5.33 31.70 0.17 -2.27 16 20 C -0.12 -1.22 6.33 31.91 0.20 -1.02 16 21 C -0.12 -1.28 6.83 31.67 0.22 -1.06 16 22 C -0.15 -2.48 5.37 31.32 0.17 -2.31 16 23 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.05 0.86 8.14 -2.38 -0.02 0.85 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.86 6.06 -2.39 -0.01 0.85 16 27 H 0.07 0.87 5.97 -2.39 -0.01 0.85 16 28 H 0.41 8.60 7.98 -92.71 -0.74 7.86 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 34 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.08 1.37 7.39 -2.39 -0.02 1.35 16 37 H 0.08 1.37 7.21 -2.39 -0.02 1.35 16 38 H 0.08 0.67 6.05 -2.39 -0.01 0.66 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.09 1.38 6.73 -2.38 -0.02 1.37 16 43 H 0.07 1.34 7.40 -2.39 -0.02 1.32 16 Total: -1.00 -74.40 336.91 3.00 -71.40 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.19 Total: 13.37 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 3.87 Total: -16.37 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -1.96 Total: -80.27 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.98 Total: -34.54 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -74.40 3.00 -71.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340734786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.173 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds