Wall clock time and date at job start Mon Mar 30 2020 01:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47228 * 2 1 4 4 C 1.42896 * 114.00436 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47311 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47019 * 174.90999 * 5 4 3 7 7 C 1.50701 * 112.90762 * 293.29611 * 6 5 4 8 8 O 1.21277 * 120.00090 * 125.14419 * 7 6 5 9 9 N 1.34776 * 119.99862 * 305.14945 * 7 6 5 10 10 C 1.46499 * 120.00326 * 174.92536 * 9 7 6 11 11 C 1.52997 * 109.47316 * 179.97438 * 10 9 7 12 12 C 1.50708 * 109.46808 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00182 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99582 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99747 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00205 * 0.02562 * 14 12 11 17 17 H 1.48510 * 109.46767 * 90.00151 * 16 14 12 18 18 H 1.48501 * 109.47000 * 209.99691 * 16 14 12 19 19 H 1.48487 * 109.47451 * 330.00102 * 16 14 12 20 20 C 1.53782 * 113.61815 * 64.54579 * 6 5 4 21 21 C 1.53787 * 87.07839 * 89.11712 * 20 6 5 22 22 C 1.53778 * 113.61471 * 162.04715 * 6 5 4 23 23 H 1.09000 * 109.46923 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47079 * 300.00158 * 1 2 3 25 25 H 1.08996 * 109.46990 * 60.00340 * 1 2 3 26 26 H 1.08996 * 109.47079 * 239.99842 * 2 1 3 27 27 H 1.08996 * 109.46990 * 119.99659 * 2 1 3 28 28 H 1.08993 * 109.47542 * 59.99384 * 4 3 2 29 29 H 1.09004 * 109.46889 * 299.99459 * 4 3 2 30 30 H 1.08992 * 109.47473 * 54.90582 * 5 4 3 31 31 H 1.08998 * 109.47084 * 294.90423 * 5 4 3 32 32 H 0.97007 * 120.00228 * 354.91568 * 9 7 6 33 33 H 1.09006 * 109.47040 * 299.99715 * 10 9 7 34 34 H 1.08994 * 109.47362 * 59.99090 * 10 9 7 35 35 H 1.09003 * 109.46756 * 299.99077 * 11 10 9 36 36 H 1.08993 * 109.47681 * 59.99819 * 11 10 9 37 37 H 0.96998 * 120.00009 * 179.97438 * 15 14 12 38 38 H 1.08998 * 113.61207 * 334.57177 * 20 6 5 39 39 H 1.08989 * 113.61801 * 203.66434 * 20 6 5 40 40 H 1.08997 * 113.60997 * 139.98577 * 21 20 6 41 41 H 1.09002 * 113.61448 * 270.88289 * 21 20 6 42 42 H 1.08998 * 113.61860 * 156.33445 * 22 6 5 43 43 H 1.09001 * 113.69005 * 25.43748 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3451 3.0606 0.1275 7 6 5.8618 2.5888 1.4622 8 8 6.7243 1.7377 1.5122 9 7 5.3652 3.1126 2.6004 10 6 5.7855 2.5771 3.8977 11 6 5.0796 3.3429 5.0184 12 6 5.5115 2.7915 6.3529 13 1 6.2190 1.9768 6.3971 14 6 5.0042 3.3280 7.5172 15 7 5.3815 2.8472 8.6818 16 14 3.7811 4.7378 7.4407 17 1 2.4007 4.1929 7.3835 18 1 3.9282 5.5869 8.6501 19 1 4.0416 5.5540 6.2280 20 6 6.1127 2.4780 -1.0710 21 6 6.0016 3.8689 -1.7177 22 6 5.8899 4.4360 -0.2927 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8334 0.9767 -0.8907 29 1 3.8340 0.9766 0.8893 30 1 3.3486 3.4413 0.8414 31 1 3.5005 3.4016 -0.9316 32 1 4.7296 3.8443 2.5607 33 1 5.5224 1.5209 3.9572 34 1 6.8643 2.6894 4.0048 35 1 5.3431 4.3989 4.9588 36 1 4.0007 3.2310 4.9115 37 1 5.0249 3.2249 9.5009 38 1 5.5639 1.7028 -1.6058 39 1 7.1360 2.1870 -0.8344 40 1 6.9052 4.1800 -2.2420 41 1 5.0983 4.0027 -2.3130 42 1 6.8525 4.6802 0.1567 43 1 5.1624 5.2423 -0.1994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342658084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:46 Heat of formation + Delta-G solvation = -109.659031 kcal Electronic energy + Delta-G solvation = -21050.196411 eV Core-core repulsion = 17901.426080 eV Total energy + Delta-G solvation = -3148.770331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77572 -39.21559 -38.61064 -36.63586 -34.82931 -33.28986 -32.14472 -30.99754 -27.82488 -26.58338 -25.97069 -23.72330 -23.66736 -22.73476 -21.96241 -19.56124 -18.99373 -18.20399 -17.67209 -17.26398 -16.85282 -16.46742 -16.25857 -15.97908 -15.50402 -15.37744 -14.97362 -14.68940 -14.59482 -13.81276 -13.51854 -13.39716 -13.30452 -13.16917 -13.04275 -12.95750 -12.37757 -12.23023 -12.19168 -12.17401 -12.01458 -11.99214 -11.78317 -11.53930 -11.39758 -11.16863 -10.80941 -10.61366 -10.54050 -10.06663 -8.32272 -6.39774 1.37477 1.39828 1.51215 1.60059 2.26305 2.34960 2.57746 3.02770 3.39971 3.57711 3.78662 3.89067 3.94059 4.06082 4.15364 4.19048 4.31299 4.37488 4.38740 4.43080 4.47158 4.61217 4.70643 4.75909 4.82929 4.85782 4.93332 4.99262 5.02600 5.09421 5.12670 5.17079 5.23794 5.26352 5.36530 5.39567 5.52193 5.62678 6.18756 6.19623 6.58945 6.68644 7.24441 7.26458 8.84624 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.004875 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.934203 B = 5741.782705 C = 6959.623233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.402 6.402 4 C 0.062 3.938 5 C -0.083 4.083 6 C -0.105 4.105 7 C 0.517 3.483 8 O -0.590 6.590 9 N -0.715 5.715 10 C 0.145 3.855 11 C -0.011 4.011 12 C -0.540 4.540 13 H 0.027 0.973 14 C 0.006 3.994 15 N -0.950 5.950 16 Si 0.958 3.042 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.237 1.237 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.117 4.117 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.411 0.589 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.268 0.732 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.340 3.205 -25.063 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.322 6.322 4 C -0.014 4.014 5 C -0.120 4.120 6 C -0.108 4.108 7 C 0.305 3.695 8 O -0.471 6.471 9 N -0.366 5.366 10 C 0.021 3.979 11 C -0.049 4.049 12 C -0.579 4.579 13 H 0.046 0.954 14 C -0.191 4.191 15 N -0.590 5.590 16 Si 0.780 3.220 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.160 1.160 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.155 4.155 23 H 0.107 0.893 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.248 0.752 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.881 2.759 -24.823 26.190 hybrid contribution -0.003 -0.124 1.170 1.177 sum -7.884 2.635 -23.653 25.071 Atomic orbital electron populations 1.21749 0.92358 1.03405 1.02910 1.22657 0.96743 0.83083 1.00401 1.87812 1.21166 1.27725 1.95508 1.22473 0.81008 0.98112 0.99837 1.21226 0.90301 0.94997 1.05483 1.22223 0.96636 1.01359 0.90556 1.21184 0.80951 0.80705 0.86646 1.90647 1.33483 1.34673 1.88303 1.46112 1.46840 1.38164 1.05483 1.21003 0.98151 0.96947 0.81806 1.19636 0.96585 0.96614 0.92070 1.21242 1.26744 1.18654 0.91240 0.95411 1.26062 0.98544 1.00035 0.94458 1.70073 1.46063 1.44260 0.98584 0.85560 0.78776 0.78778 0.78927 1.19000 1.21025 1.16029 1.22904 1.00075 0.98728 0.94200 1.22822 1.03922 0.93784 0.95425 1.22944 1.01648 0.93764 0.97147 0.89321 0.92654 0.91345 0.92097 0.94286 0.91822 0.96091 0.90211 0.87085 0.75235 0.94200 0.93988 0.94486 0.94837 0.92268 0.90173 0.91051 0.90023 0.87516 0.90643 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.05 0.94 6.66 71.98 0.48 1.42 16 3 O -0.40 -9.55 10.34 -148.98 -1.54 -11.09 16 4 C 0.06 1.42 5.64 71.98 0.41 1.82 16 5 C -0.08 -1.55 4.89 30.59 0.15 -1.40 16 6 C -0.10 -2.27 0.80 -52.40 -0.04 -2.31 16 7 C 0.52 16.82 6.06 87.66 0.53 17.35 16 8 O -0.59 -24.58 15.97 -3.02 -0.05 -24.63 16 9 N -0.72 -23.57 5.43 -463.07 -2.51 -26.08 16 10 C 0.14 6.16 5.62 86.38 0.49 6.64 16 11 C -0.01 -0.52 4.16 29.85 0.12 -0.39 16 12 C -0.54 -31.42 9.66 25.60 0.25 -31.17 16 13 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 14 C 0.01 0.36 5.47 84.65 0.46 0.83 16 15 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 16 Si 0.96 42.81 27.47 68.60 1.88 44.69 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.24 -9.46 6.54 99.48 0.65 -8.80 16 20 C -0.12 -2.41 6.78 31.12 0.21 -2.19 16 21 C -0.12 -1.62 7.73 31.12 0.24 -1.38 16 22 C -0.12 -1.93 7.21 31.12 0.22 -1.71 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 1.26 6.87 -2.39 -0.02 1.25 16 29 H 0.02 0.60 7.47 -2.38 -0.02 0.58 16 30 H 0.08 1.53 7.53 -2.39 -0.02 1.51 16 31 H 0.11 1.51 7.31 -2.39 -0.02 1.49 16 32 H 0.41 10.96 7.91 -92.70 -0.73 10.22 16 33 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 36 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.08 1.42 6.76 -2.39 -0.02 1.40 16 39 H 0.07 1.77 7.52 -2.39 -0.02 1.76 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 0.97 7.61 -2.39 -0.02 0.95 16 42 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 43 H 0.10 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -73.60 346.24 2.53 -71.07 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.19 Total: 19.56 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.26 Total: -14.08 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -2.21 Total: -85.53 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.59 Total: -35.72 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.69 kcal Total: -73.60 2.53 -71.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342658084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.588 kcal (2) G-P(sol) polarization free energy of solvation -73.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds