Wall clock time and date at job start Mon Mar 30 2020 00:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50695 * 109.47163 * 239.99312 * 2 1 3 5 5 H 1.08002 * 119.99986 * 267.27355 * 4 2 1 6 6 C 1.37875 * 119.99861 * 87.27738 * 4 2 1 7 7 N 1.31513 * 120.00286 * 354.27778 * 6 4 2 8 8 Si 1.86801 * 119.99894 * 174.28219 * 6 4 2 9 9 H 1.48503 * 109.47012 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47063 * 299.99729 * 8 6 4 11 11 H 1.48494 * 109.47616 * 59.99810 * 8 6 4 12 12 N 1.46499 * 109.46840 * 119.99432 * 2 1 3 13 13 C 1.46503 * 120.00235 * 59.99955 * 12 2 1 14 14 C 1.34781 * 119.99752 * 240.00317 * 12 2 1 15 15 O 1.21275 * 120.00451 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99651 * 179.97438 * 14 12 2 17 17 C 1.53002 * 109.47018 * 179.97438 * 16 14 12 18 18 H 1.09001 * 109.46769 * 304.99936 * 17 16 14 19 19 C 1.52994 * 109.47374 * 64.99819 * 17 16 14 20 20 C 1.53002 * 109.47374 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46990 * 300.00108 * 20 19 17 22 22 C 1.52999 * 109.46883 * 60.00185 * 21 20 19 23 23 C 1.52997 * 109.47052 * 299.99381 * 22 21 20 24 24 H 1.09006 * 109.47014 * 180.02562 * 23 22 21 25 25 O 1.42894 * 109.47513 * 300.00270 * 23 22 21 26 26 H 1.09000 * 109.46949 * 54.59444 * 1 2 3 27 27 H 1.09001 * 109.46791 * 174.59150 * 1 2 3 28 28 H 1.08999 * 109.47483 * 294.59401 * 1 2 3 29 29 H 0.97000 * 119.99849 * 354.56361 * 7 6 4 30 30 H 1.09003 * 109.46861 * 89.99708 * 13 12 2 31 31 H 1.09002 * 109.47257 * 209.99825 * 13 12 2 32 32 H 1.09001 * 109.47044 * 330.00195 * 13 12 2 33 33 H 1.08997 * 109.47847 * 299.99823 * 16 14 12 34 34 H 1.09003 * 109.47306 * 60.00022 * 16 14 12 35 35 H 1.08999 * 109.47080 * 300.00792 * 19 17 16 36 36 H 1.09009 * 109.47015 * 59.99945 * 19 17 16 37 37 H 1.09001 * 109.46769 * 60.00117 * 20 19 17 38 38 H 1.08997 * 109.47128 * 180.02562 * 20 19 17 39 39 H 1.09005 * 109.46577 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.47097 * 299.99944 * 21 20 19 41 41 H 1.08995 * 109.47451 * 59.99975 * 22 21 20 42 42 H 1.09003 * 109.47151 * 179.97438 * 22 21 20 43 43 H 0.96697 * 114.00115 * 300.00300 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2543 -1.7668 -1.1911 6 6 2.2087 -0.0122 -2.4060 7 7 1.8333 1.2457 -2.4863 8 14 2.9807 -0.8527 -3.8848 9 1 3.0585 0.1073 -5.0151 10 1 4.3475 -1.3151 -3.5338 11 1 2.1504 -2.0184 -4.2811 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4283 14 6 2.7931 -0.0353 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2949 -0.7455 3.3142 17 6 4.1455 0.2160 4.1467 18 1 4.9423 0.6263 3.5263 19 6 3.2663 1.3551 4.6667 20 6 4.1168 2.3163 5.4996 21 6 4.7275 1.5625 6.6827 22 6 5.6067 0.4235 6.1627 23 6 4.7562 -0.5377 5.3298 24 1 5.3826 -1.3495 4.9596 25 8 3.7112 -1.0756 6.1425 26 1 -0.3633 0.5954 -0.8376 27 1 -0.3633 -1.0231 -0.0969 28 1 -0.3634 0.4277 0.9344 29 1 1.3615 1.6592 -1.7465 30 1 2.4157 -2.7376 0.9720 31 1 1.6237 -2.2850 2.5005 32 1 0.6904 -2.3001 0.9849 33 1 2.4470 -1.0876 3.9075 34 1 3.9003 -1.6022 3.0181 35 1 2.8308 1.8917 3.8238 36 1 2.4694 0.9448 5.2870 37 1 4.9139 2.7265 4.8797 38 1 3.4903 3.1275 5.8705 39 1 5.3337 2.2472 7.2759 40 1 3.9303 1.1522 7.3026 41 1 6.4038 0.8337 5.5428 42 1 6.0421 -0.1133 7.0055 43 1 4.0260 -1.5677 6.9131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343277031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:01 Heat of formation + Delta-G solvation = -115.042822 kcal Electronic energy + Delta-G solvation = -21911.730370 eV Core-core repulsion = 18762.726580 eV Total energy + Delta-G solvation = -3149.003789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84102 -38.49598 -35.54593 -34.92074 -33.08106 -32.31743 -29.90693 -29.48309 -26.70673 -26.03369 -24.76089 -22.65080 -22.02980 -20.69862 -19.63594 -18.34038 -16.91676 -16.81573 -16.41480 -15.53599 -15.06595 -14.93340 -14.46442 -14.08713 -13.72761 -13.51559 -13.10172 -12.92029 -12.66508 -12.54533 -12.19592 -11.96118 -11.84589 -11.66742 -11.43495 -11.25373 -11.12944 -11.04600 -10.80667 -10.71937 -10.58046 -10.35202 -10.12701 -10.09341 -9.95801 -9.68790 -8.81724 -8.72589 -8.42174 -7.48256 -6.38616 -4.12628 3.40419 3.44575 3.47523 3.62963 3.97049 4.21901 4.52192 4.69526 4.72410 4.85823 5.12779 5.20674 5.33953 5.36771 5.40496 5.52725 5.55100 5.61406 5.72252 5.74254 5.82695 5.94878 5.99283 6.05438 6.11655 6.24287 6.26363 6.29789 6.35474 6.48576 6.52202 6.66260 6.73465 6.74873 7.12631 7.29664 7.59563 7.66908 8.01581 8.35169 8.53130 8.80289 9.11293 9.60304 10.98511 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029010 B = 0.004492 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.945435 B = 6231.595133 C = 6326.874086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.239 3.761 3 H 0.066 0.934 4 C -0.604 4.604 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.903 5.903 8 Si 1.068 2.932 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.288 1.288 12 N -0.592 5.592 13 C 0.087 3.913 14 C 0.502 3.498 15 O -0.552 6.552 16 C -0.130 4.130 17 C -0.060 4.060 18 H 0.086 0.914 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.109 3.891 24 H 0.052 0.948 25 O -0.559 6.559 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.021 0.979 29 H 0.272 0.728 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 -5.387 17.427 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.138 3.862 3 H 0.084 0.916 4 C -0.643 4.643 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.538 5.538 8 Si 0.896 3.104 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.214 1.214 12 N -0.323 5.323 13 C -0.057 4.057 14 C 0.290 3.710 15 O -0.432 6.432 16 C -0.170 4.170 17 C -0.079 4.079 18 H 0.105 0.895 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.188 4.188 23 C 0.050 3.950 24 H 0.070 0.930 25 O -0.364 6.364 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.799 -4.216 15.280 16.562 hybrid contribution -0.133 -0.842 1.951 2.129 sum 4.666 -5.058 17.231 18.555 Atomic orbital electron populations 1.22189 0.99286 1.00112 0.98816 1.19048 0.89897 0.95274 0.81957 0.91645 1.22067 1.49344 0.97179 0.95672 0.92984 1.25806 0.95728 0.95599 1.00911 1.70764 1.35868 1.12074 1.35118 0.83572 0.76161 0.75078 0.75601 1.20682 1.21510 1.21420 1.48272 1.49283 1.11471 1.23298 1.21538 1.01131 0.83484 0.99521 1.20514 0.78983 0.87178 0.84345 1.90598 1.58455 1.17256 1.76896 1.21664 1.01125 0.99045 0.95181 1.20910 0.98532 0.94979 0.93449 0.89548 1.21614 0.97759 0.95846 1.00020 1.21511 0.99462 0.97933 0.96582 1.21446 0.98986 0.96694 0.98008 1.22224 0.98721 0.97994 0.99887 1.21859 0.88132 0.94071 0.90921 0.93011 1.86557 1.34785 1.73705 1.41342 0.92559 0.93962 0.95999 0.91677 0.93373 0.92717 0.91372 0.88979 0.89985 0.89727 0.92110 0.92199 0.92356 0.92693 0.91594 0.91088 0.92127 0.78396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.96 37.16 0.33 -3.03 16 2 C 0.24 6.16 2.26 -69.08 -0.16 6.01 16 3 H 0.07 1.95 5.76 -51.93 -0.30 1.65 16 4 C -0.60 -16.76 8.29 -34.44 -0.29 -17.05 16 5 H 0.05 1.42 7.35 -52.49 -0.39 1.03 16 6 C 0.03 0.72 5.45 -17.82 -0.10 0.63 16 7 N -0.90 -27.46 13.56 55.43 0.75 -26.71 16 8 Si 1.07 25.17 29.91 -169.99 -5.08 20.09 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.59 -13.00 2.75 -175.26 -0.48 -13.48 16 13 C 0.09 1.52 9.33 59.85 0.56 2.08 16 14 C 0.50 10.65 7.39 -10.98 -0.08 10.57 16 15 O -0.55 -13.68 13.29 5.56 0.07 -13.60 16 16 C -0.13 -2.06 3.51 -27.88 -0.10 -2.15 16 17 C -0.06 -0.87 1.67 -90.62 -0.15 -1.02 16 18 H 0.09 1.38 7.96 -51.93 -0.41 0.97 16 19 C -0.12 -1.74 4.80 -26.73 -0.13 -1.87 16 20 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 21 C -0.11 -1.18 5.78 -26.73 -0.15 -1.34 16 22 C -0.15 -1.45 5.64 -26.73 -0.15 -1.60 16 23 C 0.11 1.20 3.21 -26.73 -0.09 1.12 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 O -0.56 -5.90 11.39 -35.23 -0.40 -6.30 16 26 H 0.06 1.36 7.58 -51.93 -0.39 0.97 16 27 H 0.04 0.91 6.90 -51.93 -0.36 0.55 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.27 8.31 6.28 -40.82 -0.26 8.05 16 30 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.05 0.77 6.44 -51.93 -0.33 0.43 16 32 H 0.07 1.17 6.54 -51.93 -0.34 0.83 16 33 H 0.09 1.38 7.09 -51.93 -0.37 1.01 16 34 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.08 1.57 5.95 -51.93 -0.31 1.26 16 36 H 0.06 0.92 7.68 -51.92 -0.40 0.52 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.69 7.68 -51.93 -0.40 0.30 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.37 2.33 9.08 45.56 0.41 2.74 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -32.90 329.91 -7.26 -40.16 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.44 Total: 4.19 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.66 Total: -9.32 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.27 Total: -40.19 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.33 Total: -19.90 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.90 -7.26 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343277031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.883 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds