Wall clock time and date at job start Mon Mar 30 2020 00:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50695 * 109.47163 * 239.99312 * 2 1 3 5 5 H 1.08002 * 119.99986 * 267.27355 * 4 2 1 6 6 C 1.37875 * 119.99861 * 87.27738 * 4 2 1 7 7 N 1.31513 * 120.00286 * 354.27778 * 6 4 2 8 8 Si 1.86801 * 119.99894 * 174.28219 * 6 4 2 9 9 H 1.48503 * 109.47012 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47063 * 299.99729 * 8 6 4 11 11 H 1.48494 * 109.47616 * 59.99810 * 8 6 4 12 12 N 1.46499 * 109.46840 * 119.99432 * 2 1 3 13 13 C 1.46503 * 120.00235 * 59.99955 * 12 2 1 14 14 C 1.34781 * 119.99752 * 240.00317 * 12 2 1 15 15 O 1.21275 * 120.00451 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99651 * 179.97438 * 14 12 2 17 17 C 1.53002 * 109.47018 * 179.97438 * 16 14 12 18 18 H 1.09001 * 109.46769 * 304.99936 * 17 16 14 19 19 C 1.52994 * 109.47374 * 64.99819 * 17 16 14 20 20 C 1.53002 * 109.47374 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46990 * 300.00108 * 20 19 17 22 22 C 1.52999 * 109.46883 * 60.00185 * 21 20 19 23 23 C 1.52997 * 109.47052 * 299.99381 * 22 21 20 24 24 H 1.09006 * 109.47014 * 180.02562 * 23 22 21 25 25 O 1.42894 * 109.47513 * 300.00270 * 23 22 21 26 26 H 1.09000 * 109.46949 * 54.59444 * 1 2 3 27 27 H 1.09001 * 109.46791 * 174.59150 * 1 2 3 28 28 H 1.08999 * 109.47483 * 294.59401 * 1 2 3 29 29 H 0.97000 * 119.99849 * 354.56361 * 7 6 4 30 30 H 1.09003 * 109.46861 * 89.99708 * 13 12 2 31 31 H 1.09002 * 109.47257 * 209.99825 * 13 12 2 32 32 H 1.09001 * 109.47044 * 330.00195 * 13 12 2 33 33 H 1.08997 * 109.47847 * 299.99823 * 16 14 12 34 34 H 1.09003 * 109.47306 * 60.00022 * 16 14 12 35 35 H 1.08999 * 109.47080 * 300.00792 * 19 17 16 36 36 H 1.09009 * 109.47015 * 59.99945 * 19 17 16 37 37 H 1.09001 * 109.46769 * 60.00117 * 20 19 17 38 38 H 1.08997 * 109.47128 * 180.02562 * 20 19 17 39 39 H 1.09005 * 109.46577 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.47097 * 299.99944 * 21 20 19 41 41 H 1.08995 * 109.47451 * 59.99975 * 22 21 20 42 42 H 1.09003 * 109.47151 * 179.97438 * 22 21 20 43 43 H 0.96697 * 114.00115 * 300.00300 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2543 -1.7668 -1.1911 6 6 2.2087 -0.0122 -2.4060 7 7 1.8333 1.2457 -2.4863 8 14 2.9807 -0.8527 -3.8848 9 1 3.0585 0.1073 -5.0151 10 1 4.3475 -1.3151 -3.5338 11 1 2.1504 -2.0184 -4.2811 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4283 14 6 2.7931 -0.0353 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2949 -0.7455 3.3142 17 6 4.1455 0.2160 4.1467 18 1 4.9423 0.6263 3.5263 19 6 3.2663 1.3551 4.6667 20 6 4.1168 2.3163 5.4996 21 6 4.7275 1.5625 6.6827 22 6 5.6067 0.4235 6.1627 23 6 4.7562 -0.5377 5.3298 24 1 5.3826 -1.3495 4.9596 25 8 3.7112 -1.0756 6.1425 26 1 -0.3633 0.5954 -0.8376 27 1 -0.3633 -1.0231 -0.0969 28 1 -0.3634 0.4277 0.9344 29 1 1.3615 1.6592 -1.7465 30 1 2.4157 -2.7376 0.9720 31 1 1.6237 -2.2850 2.5005 32 1 0.6904 -2.3001 0.9849 33 1 2.4470 -1.0876 3.9075 34 1 3.9003 -1.6022 3.0181 35 1 2.8308 1.8917 3.8238 36 1 2.4694 0.9448 5.2870 37 1 4.9139 2.7265 4.8797 38 1 3.4903 3.1275 5.8705 39 1 5.3337 2.2472 7.2759 40 1 3.9303 1.1522 7.3026 41 1 6.4038 0.8337 5.5428 42 1 6.0421 -0.1133 7.0055 43 1 4.0260 -1.5677 6.9131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343277031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:01 Heat of formation + Delta-G solvation = -137.638756 kcal Electronic energy + Delta-G solvation = -21912.710203 eV Core-core repulsion = 18762.726580 eV Total energy + Delta-G solvation = -3149.983623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20733 -39.78325 -37.32177 -35.86900 -34.99510 -33.61649 -31.41579 -30.76628 -27.99702 -27.56234 -26.87836 -23.77556 -23.34531 -22.18522 -20.66464 -20.02572 -18.83395 -18.06792 -17.67992 -16.76894 -16.56268 -16.35240 -15.67375 -15.45310 -15.23113 -14.91780 -14.78473 -14.37969 -14.04547 -13.70120 -13.56323 -13.41987 -13.24512 -13.06688 -12.98761 -12.79371 -12.59811 -12.51954 -12.36385 -12.09881 -11.95202 -11.84974 -11.60880 -11.40829 -11.06671 -10.86603 -10.59163 -10.53587 -10.37266 -9.30096 -8.64495 -6.39634 1.51086 1.59409 1.78338 1.81662 2.34319 2.57550 3.18463 3.40225 3.68176 3.73603 3.92174 3.97056 4.18949 4.30633 4.31937 4.41939 4.47240 4.50946 4.57073 4.60780 4.64607 4.66257 4.71163 4.79193 4.80553 4.93299 4.97985 5.06777 5.11742 5.16218 5.25498 5.29490 5.32054 5.33881 5.52630 5.57655 5.79050 5.90596 6.20420 6.48930 6.80801 7.05225 7.37393 7.48367 8.71482 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029010 B = 0.004492 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.945435 B = 6231.595133 C = 6326.874086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.238 3.762 3 H 0.014 0.986 4 C -0.607 4.607 5 H 0.059 0.941 6 C -0.030 4.030 7 N -0.934 5.934 8 Si 1.116 2.884 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.261 1.261 12 N -0.602 5.602 13 C 0.084 3.916 14 C 0.489 3.511 15 O -0.599 6.599 16 C -0.114 4.114 17 C -0.063 4.063 18 H 0.063 0.937 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.108 4.108 22 C -0.148 4.148 23 C 0.119 3.881 24 H 0.069 0.931 25 O -0.571 6.571 26 H 0.035 0.965 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.256 0.744 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 -8.330 19.432 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.135 3.865 3 H 0.032 0.968 4 C -0.646 4.646 5 H 0.077 0.923 6 C -0.229 4.229 7 N -0.571 5.571 8 Si 0.938 3.062 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.186 1.186 12 N -0.333 5.333 13 C -0.059 4.059 14 C 0.279 3.721 15 O -0.482 6.482 16 C -0.153 4.153 17 C -0.082 4.082 18 H 0.082 0.918 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.146 4.146 22 C -0.186 4.186 23 C 0.060 3.940 24 H 0.087 0.913 25 O -0.379 6.379 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.690 -7.215 17.338 19.622 hybrid contribution -0.449 0.099 1.401 1.474 sum 5.241 -7.116 18.739 20.718 Atomic orbital electron populations 1.21976 0.97382 1.00960 0.98616 1.18743 0.91304 0.92984 0.83443 0.96785 1.22384 1.48450 0.97477 0.96259 0.92322 1.27322 0.95796 0.95466 1.04289 1.70887 1.37907 1.13512 1.34788 0.82961 0.76275 0.74832 0.72174 1.21281 1.20211 1.18570 1.48299 1.49476 1.13329 1.22183 1.21795 1.01241 0.80547 1.02294 1.21579 0.78093 0.86887 0.85535 1.90585 1.59906 1.19621 1.78083 1.21645 1.01999 0.99208 0.92481 1.20910 0.97562 0.94963 0.94781 0.91840 1.21489 0.98273 0.96361 0.98653 1.21515 0.98918 0.97852 0.97304 1.21411 0.99340 0.97073 0.96748 1.22231 0.98161 0.97562 1.00632 1.21654 0.88015 0.94453 0.89845 0.91276 1.86496 1.34906 1.74129 1.42394 0.94591 0.92005 0.94745 0.93405 0.92780 0.88784 0.91226 0.87266 0.87710 0.94249 0.92033 0.93318 0.92266 0.91123 0.91212 0.91519 0.89037 0.75845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.96 71.98 0.65 -5.49 16 2 C 0.24 12.64 2.26 44.25 0.10 12.74 16 3 H 0.01 0.90 5.76 -2.39 -0.01 0.88 16 4 C -0.61 -34.02 8.29 25.60 0.21 -33.81 16 5 H 0.06 3.14 7.35 -2.91 -0.02 3.12 16 6 C -0.03 -1.74 5.45 84.65 0.46 -1.28 16 7 N -0.93 -59.07 13.56 21.45 0.29 -58.78 16 8 Si 1.12 50.59 29.91 68.60 2.05 52.64 16 9 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 12 N -0.60 -26.40 2.75 -826.78 -2.28 -28.67 16 13 C 0.08 2.70 9.33 127.77 1.19 3.89 16 14 C 0.49 21.06 7.39 87.66 0.65 21.71 16 15 O -0.60 -31.50 13.29 -3.01 -0.04 -31.54 16 16 C -0.11 -3.41 3.51 29.85 0.10 -3.31 16 17 C -0.06 -1.79 1.67 -10.79 -0.02 -1.81 16 18 H 0.06 2.08 7.96 -2.39 -0.02 2.06 16 19 C -0.11 -3.40 4.80 30.59 0.15 -3.25 16 20 C -0.12 -3.00 5.92 30.59 0.18 -2.81 16 21 C -0.11 -1.99 5.78 30.59 0.18 -1.81 16 22 C -0.15 -2.37 5.64 30.59 0.17 -2.20 16 23 C 0.12 2.26 3.21 30.59 0.10 2.35 16 24 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 25 O -0.57 -9.77 11.39 -148.98 -1.70 -11.46 16 26 H 0.04 1.79 7.58 -2.39 -0.02 1.78 16 27 H 0.06 2.61 6.90 -2.39 -0.02 2.60 16 28 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.26 16.61 6.28 -92.71 -0.58 16.03 16 30 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.09 2.29 6.44 -2.39 -0.02 2.27 16 32 H 0.07 2.22 6.54 -2.39 -0.02 2.21 16 33 H 0.11 2.94 7.09 -2.39 -0.02 2.92 16 34 H 0.10 2.69 8.11 -2.39 -0.02 2.67 16 35 H 0.04 1.56 5.95 -2.39 -0.01 1.54 16 36 H 0.06 1.84 7.68 -2.38 -0.02 1.82 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 1.26 7.68 -2.39 -0.02 1.24 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 43 H 0.39 3.06 9.08 -74.06 -0.67 2.39 16 Total: -1.00 -75.83 329.91 2.95 -72.87 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.50 Total: 20.03 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.12 Total: -15.09 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -1.98 Total: -87.45 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -1.74 Total: -43.01 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -75.83 2.95 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343277031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.764 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds