Wall clock time and date at job start Mon Mar 30 2020 00:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.46501 * 119.99908 * 60.00043 * 12 2 1 14 14 C 1.34773 * 119.99963 * 240.00393 * 12 2 1 15 15 O 1.21278 * 120.00378 * 0.02562 * 14 12 2 16 16 C 1.50707 * 119.99734 * 179.97438 * 14 12 2 17 17 C 1.52997 * 109.46994 * 180.02562 * 16 14 12 18 18 H 1.09001 * 109.47518 * 305.00377 * 17 16 14 19 19 C 1.53002 * 109.47310 * 65.00359 * 17 16 14 20 20 C 1.52997 * 109.47310 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47197 * 299.99926 * 20 19 17 22 22 C 1.53002 * 109.46930 * 59.99841 * 21 20 19 23 23 C 1.52997 * 109.47310 * 300.00090 * 22 21 20 24 24 H 1.09005 * 109.47238 * 300.00413 * 23 22 21 25 25 O 1.42902 * 109.47090 * 180.02562 * 23 22 21 26 26 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 27 27 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 29 29 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46949 * 89.99866 * 13 12 2 31 31 H 1.08993 * 109.47269 * 210.00373 * 13 12 2 32 32 H 1.09003 * 109.47113 * 330.00485 * 13 12 2 33 33 H 1.08993 * 109.47183 * 300.00095 * 16 14 12 34 34 H 1.08999 * 109.46667 * 60.00372 * 16 14 12 35 35 H 1.09002 * 109.46838 * 299.99843 * 19 17 16 36 36 H 1.08993 * 109.46949 * 59.99878 * 19 17 16 37 37 H 1.09003 * 109.47290 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.47518 * 60.00018 * 20 19 17 39 39 H 1.09005 * 109.46750 * 299.99960 * 21 20 19 40 40 H 1.08999 * 109.47240 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46838 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.46815 * 60.00502 * 22 21 20 43 43 H 0.96695 * 113.99974 * 60.00048 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6295 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0832 15 8 3.0858 1.1257 1.8917 16 6 3.2952 -0.7459 3.3140 17 6 4.1447 0.2159 4.1471 18 1 4.9414 0.6272 3.5273 19 6 3.2644 1.3540 4.6674 20 6 4.1138 2.3155 5.5011 21 6 4.7247 1.5617 6.6840 22 6 5.6050 0.4236 6.1637 23 6 4.7557 -0.5379 5.3301 24 1 3.9586 -0.9491 5.9496 25 8 5.5778 -1.6012 4.8446 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7046 1.1585 -3.4844 30 1 2.4159 -2.7377 0.9715 31 1 1.6239 -2.2853 2.5000 32 1 0.6906 -2.3002 0.9845 33 1 2.4473 -1.0881 3.9072 34 1 3.9006 -1.6024 3.0175 35 1 2.8288 1.8908 3.8247 36 1 2.4677 0.9429 5.2873 37 1 3.4867 3.1266 5.8714 38 1 4.9108 2.7268 4.8816 39 1 3.9277 1.1505 7.3035 40 1 5.3302 2.2466 7.2777 41 1 6.0399 -0.1137 7.0065 42 1 6.4020 0.8349 5.5442 43 1 5.9982 -2.1230 5.5417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343277036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:03 Heat of formation + Delta-G solvation = -111.186785 kcal Electronic energy + Delta-G solvation = -21769.446678 eV Core-core repulsion = 18620.610099 eV Total energy + Delta-G solvation = -3148.836579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75638 -38.35991 -35.63875 -35.16199 -32.92856 -32.28396 -29.75200 -29.35908 -26.64009 -25.92078 -25.14454 -22.70390 -21.91914 -20.52211 -19.76819 -18.08345 -17.26603 -16.55013 -16.16093 -15.27843 -15.07623 -14.95424 -14.43297 -14.31056 -13.82670 -13.64824 -12.97043 -12.85158 -12.66976 -12.42477 -12.26553 -12.00542 -11.61473 -11.46440 -11.40272 -11.27426 -11.02369 -10.86439 -10.75236 -10.67010 -10.56433 -10.28759 -10.21156 -10.12801 -10.08842 -9.79051 -9.09929 -8.72438 -8.37177 -7.48346 -6.02659 -4.10181 3.29324 3.36202 3.39528 3.52818 4.03829 4.17252 4.43911 4.64864 4.71112 4.94065 5.13498 5.17495 5.27840 5.32894 5.35752 5.42134 5.50873 5.64194 5.67247 5.74128 5.88943 5.96834 5.98210 6.06189 6.14172 6.22026 6.26072 6.34006 6.37601 6.59981 6.65240 6.81076 6.87373 7.11537 7.51818 7.59250 7.61768 7.77751 8.07670 8.26156 8.63432 8.89865 9.17686 9.56506 11.02526 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029583 B = 0.004409 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.278004 B = 6349.699320 C = 6613.252976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.596 5.596 13 C 0.088 3.912 14 C 0.503 3.497 15 O -0.553 6.553 16 C -0.132 4.132 17 C -0.060 4.060 18 H 0.084 0.916 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.150 4.150 23 C 0.109 3.891 24 H 0.052 0.948 25 O -0.564 6.564 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -3.794 17.962 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.327 5.327 13 C -0.056 4.056 14 C 0.291 3.709 15 O -0.433 6.433 16 C -0.172 4.172 17 C -0.079 4.079 18 H 0.102 0.898 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.188 4.188 23 C 0.050 3.950 24 H 0.070 0.930 25 O -0.369 6.369 26 H 0.112 0.888 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.552 -2.831 17.107 17.927 hybrid contribution 0.453 -0.900 -0.328 1.060 sum 5.006 -3.731 16.779 17.903 Atomic orbital electron populations 1.22092 0.98387 0.99267 1.00762 1.18911 0.90745 0.94546 0.80156 0.91920 1.21346 1.31589 1.12874 0.90370 0.92355 1.24896 0.95010 0.94998 0.98943 1.69884 1.36361 1.22864 1.23644 0.86500 0.79197 0.79293 0.82444 1.20658 1.21131 1.19944 1.48238 1.49142 1.11599 1.23684 1.21534 1.01411 0.83385 0.99297 1.20449 0.78868 0.87131 0.84468 1.90590 1.58506 1.17201 1.77001 1.21684 1.00202 0.99844 0.95509 1.20846 0.97985 0.94465 0.94580 0.89800 1.21718 0.97280 0.96160 1.00469 1.21550 0.99677 0.98015 0.96515 1.21501 0.98900 0.97052 0.97962 1.22250 0.99260 0.97696 0.99560 1.21894 0.91488 0.86740 0.94882 0.92986 1.86581 1.66682 1.46223 1.37404 0.88848 0.95193 0.97058 0.92770 0.93403 0.92989 0.91057 0.90112 0.88757 0.88725 0.92786 0.92021 0.91745 0.92111 0.92081 0.92140 0.91080 0.78173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.95 37.16 0.33 -3.24 16 2 C 0.26 6.72 2.64 -69.08 -0.18 6.54 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.51 8.37 -34.44 -0.29 -14.80 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.77 5.31 -17.82 -0.09 1.67 16 7 N -0.89 -25.58 11.31 55.43 0.63 -24.95 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.60 -13.08 2.75 -175.26 -0.48 -13.57 16 13 C 0.09 1.53 9.48 59.85 0.57 2.10 16 14 C 0.50 10.61 7.39 -10.98 -0.08 10.53 16 15 O -0.55 -13.54 13.29 5.56 0.07 -13.46 16 16 C -0.13 -2.09 3.65 -27.88 -0.10 -2.20 16 17 C -0.06 -0.87 1.58 -90.62 -0.14 -1.02 16 18 H 0.08 1.45 7.96 -51.93 -0.41 1.03 16 19 C -0.12 -1.66 4.94 -26.73 -0.13 -1.79 16 20 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 22 C -0.15 -1.46 5.54 -26.73 -0.15 -1.61 16 23 C 0.11 1.23 2.90 -26.73 -0.08 1.15 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 O -0.56 -6.51 12.56 -35.23 -0.44 -6.95 16 26 H 0.09 2.49 6.06 -51.93 -0.31 2.18 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 32 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 33 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 34 H 0.09 1.48 7.50 -51.93 -0.39 1.10 16 35 H 0.09 1.65 5.95 -51.93 -0.31 1.34 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.37 2.54 9.08 45.56 0.41 2.96 16 LS Contribution 331.13 15.07 4.99 4.99 Total: -1.00 -31.91 331.13 -7.45 -39.36 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.53 Total: 3.60 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.67 Total: -5.48 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.14 Total: -38.52 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.37 Total: -20.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.91 -7.45 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343277036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.822 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds