Wall clock time and date at job start Mon Mar 30 2020 00:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.46501 * 119.99908 * 60.00043 * 12 2 1 14 14 C 1.34773 * 119.99963 * 240.00393 * 12 2 1 15 15 O 1.21278 * 120.00378 * 0.02562 * 14 12 2 16 16 C 1.50707 * 119.99734 * 179.97438 * 14 12 2 17 17 C 1.52997 * 109.46994 * 180.02562 * 16 14 12 18 18 H 1.09001 * 109.47518 * 305.00377 * 17 16 14 19 19 C 1.53002 * 109.47310 * 65.00359 * 17 16 14 20 20 C 1.52997 * 109.47310 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47197 * 299.99926 * 20 19 17 22 22 C 1.53002 * 109.46930 * 59.99841 * 21 20 19 23 23 C 1.52997 * 109.47310 * 300.00090 * 22 21 20 24 24 H 1.09005 * 109.47238 * 300.00413 * 23 22 21 25 25 O 1.42902 * 109.47090 * 180.02562 * 23 22 21 26 26 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 27 27 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 29 29 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46949 * 89.99866 * 13 12 2 31 31 H 1.08993 * 109.47269 * 210.00373 * 13 12 2 32 32 H 1.09003 * 109.47113 * 330.00485 * 13 12 2 33 33 H 1.08993 * 109.47183 * 300.00095 * 16 14 12 34 34 H 1.08999 * 109.46667 * 60.00372 * 16 14 12 35 35 H 1.09002 * 109.46838 * 299.99843 * 19 17 16 36 36 H 1.08993 * 109.46949 * 59.99878 * 19 17 16 37 37 H 1.09003 * 109.47290 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.47518 * 60.00018 * 20 19 17 39 39 H 1.09005 * 109.46750 * 299.99960 * 21 20 19 40 40 H 1.08999 * 109.47240 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46838 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.46815 * 60.00502 * 22 21 20 43 43 H 0.96695 * 113.99974 * 60.00048 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6295 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0832 15 8 3.0858 1.1257 1.8917 16 6 3.2952 -0.7459 3.3140 17 6 4.1447 0.2159 4.1471 18 1 4.9414 0.6272 3.5273 19 6 3.2644 1.3540 4.6674 20 6 4.1138 2.3155 5.5011 21 6 4.7247 1.5617 6.6840 22 6 5.6050 0.4236 6.1637 23 6 4.7557 -0.5379 5.3301 24 1 3.9586 -0.9491 5.9496 25 8 5.5778 -1.6012 4.8446 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7046 1.1585 -3.4844 30 1 2.4159 -2.7377 0.9715 31 1 1.6239 -2.2853 2.5000 32 1 0.6906 -2.3002 0.9845 33 1 2.4473 -1.0881 3.9072 34 1 3.9006 -1.6024 3.0175 35 1 2.8288 1.8908 3.8247 36 1 2.4677 0.9429 5.2873 37 1 3.4867 3.1266 5.8714 38 1 4.9108 2.7268 4.8816 39 1 3.9277 1.1505 7.3035 40 1 5.3302 2.2466 7.2777 41 1 6.0399 -0.1137 7.0065 42 1 6.4020 0.8349 5.5442 43 1 5.9982 -2.1230 5.5417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343277036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:03 Heat of formation + Delta-G solvation = -133.056719 kcal Electronic energy + Delta-G solvation = -21770.395030 eV Core-core repulsion = 18620.610099 eV Total energy + Delta-G solvation = -3149.784931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12316 -39.63483 -37.15936 -36.35377 -34.83605 -33.57491 -31.38741 -30.51390 -27.90806 -27.48679 -27.22259 -23.77809 -23.19537 -21.96940 -20.77275 -19.75725 -18.51611 -18.11799 -17.82585 -17.08942 -16.42082 -16.18784 -16.04814 -15.36461 -15.04553 -14.74616 -14.54018 -14.17782 -14.00069 -13.88842 -13.55771 -13.44510 -13.21859 -12.94464 -12.86802 -12.69851 -12.63237 -12.43098 -12.23794 -12.16520 -12.12542 -11.88172 -11.57155 -11.32371 -11.21955 -11.07747 -10.67041 -10.56781 -10.30239 -9.27645 -8.15168 -6.31956 1.39307 1.41179 1.51242 1.87867 2.34171 2.53061 3.12033 3.33999 3.68486 3.70717 3.96972 4.10970 4.20051 4.32118 4.35225 4.46386 4.47838 4.51888 4.60956 4.67986 4.73744 4.81606 4.85446 4.88319 4.99860 5.03990 5.08566 5.09378 5.21816 5.26479 5.28258 5.32795 5.45304 5.51266 5.57573 5.64446 5.69799 6.05629 6.17037 6.76335 6.89157 7.02777 7.33620 7.54303 8.88886 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029583 B = 0.004409 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.278004 B = 6349.699320 C = 6613.252976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.007 0.993 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.605 5.605 13 C 0.084 3.916 14 C 0.491 3.509 15 O -0.599 6.599 16 C -0.117 4.117 17 C -0.061 4.061 18 H 0.043 0.957 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.147 4.147 23 C 0.116 3.884 24 H 0.078 0.922 25 O -0.584 6.584 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.020 0.980 29 H 0.264 0.736 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 -6.227 20.186 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.025 0.975 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.336 5.336 13 C -0.058 4.058 14 C 0.280 3.720 15 O -0.481 6.481 16 C -0.157 4.157 17 C -0.080 4.080 18 H 0.062 0.938 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.185 4.185 23 C 0.058 3.942 24 H 0.095 0.905 25 O -0.393 6.393 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.785 -5.307 19.365 20.642 hybrid contribution 0.402 -0.097 -1.021 1.101 sum 5.187 -5.404 18.345 19.815 Atomic orbital electron populations 1.21864 0.97125 1.00072 0.99913 1.18507 0.91655 0.92138 0.81922 0.97524 1.21588 1.31844 1.12963 0.91369 0.92512 1.25748 0.95090 0.95656 1.02022 1.70026 1.37175 1.24064 1.24389 0.85451 0.78795 0.78311 0.78430 1.19075 1.21001 1.19779 1.48283 1.49377 1.13373 1.22553 1.21780 1.01274 0.80495 1.02246 1.21494 0.77973 0.86847 0.85636 1.90576 1.59876 1.19537 1.78148 1.21668 1.01378 0.99451 0.93157 1.20835 0.96884 0.94840 0.95488 0.93810 1.21616 0.98037 0.96231 0.99459 1.21544 0.99010 0.98135 0.97088 1.21479 0.99462 0.96997 0.96855 1.22236 0.98580 0.97645 1.00001 1.21773 0.92376 0.86890 0.93166 0.90468 1.86523 1.67015 1.46535 1.39185 0.91450 0.93367 0.96083 0.92645 0.93122 0.88658 0.91144 0.86758 0.88079 0.93199 0.90659 0.91224 0.93768 0.90285 0.90600 0.89086 0.92971 0.75611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 8.95 71.98 0.64 -5.88 16 2 C 0.26 14.11 2.64 44.25 0.12 14.22 16 3 H 0.01 0.44 6.90 -2.38 -0.02 0.42 16 4 C -0.54 -30.53 8.37 25.60 0.21 -30.31 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 6 C 0.01 0.80 5.31 84.66 0.45 1.25 16 7 N -0.92 -54.27 11.31 21.45 0.24 -54.02 16 8 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 N -0.61 -26.82 2.75 -826.79 -2.28 -29.10 16 13 C 0.08 2.79 9.48 127.77 1.21 4.00 16 14 C 0.49 21.17 7.39 87.66 0.65 21.82 16 15 O -0.60 -31.30 13.29 -3.02 -0.04 -31.34 16 16 C -0.12 -3.54 3.65 29.85 0.11 -3.43 16 17 C -0.06 -1.76 1.58 -10.79 -0.02 -1.78 16 18 H 0.04 1.59 7.96 -2.39 -0.02 1.57 16 19 C -0.12 -3.23 4.94 30.59 0.15 -3.08 16 20 C -0.12 -2.75 5.92 30.59 0.18 -2.57 16 21 C -0.11 -1.77 5.92 30.60 0.18 -1.59 16 22 C -0.15 -2.44 5.54 30.59 0.17 -2.27 16 23 C 0.12 2.29 2.90 30.59 0.09 2.38 16 24 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 25 O -0.58 -11.80 12.56 -148.98 -1.87 -13.67 16 26 H 0.07 3.71 6.06 -2.39 -0.01 3.69 16 27 H 0.05 2.16 6.66 -2.39 -0.02 2.15 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.10 2.29 6.44 -2.39 -0.02 2.28 16 32 H 0.07 2.33 6.43 -2.39 -0.02 2.31 16 33 H 0.11 2.69 7.40 -2.39 -0.02 2.68 16 34 H 0.10 2.97 7.50 -2.39 -0.02 2.95 16 35 H 0.05 1.84 5.95 -2.39 -0.01 1.83 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.03 8.14 -2.38 -0.02 1.02 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.39 3.93 9.08 -74.06 -0.67 3.26 16 Total: -1.00 -73.90 331.13 2.54 -71.35 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.31 Total: 17.65 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 4.15 Total: -7.23 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.03 Total: -83.12 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.91 Total: -45.01 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.90 2.54 -71.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343277036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.705 kcal (2) G-P(sol) polarization free energy of solvation -73.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds