Wall clock time and date at job start Mon Mar 30 2020 00:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.46506 * 119.99620 * 60.00694 * 12 2 1 14 14 C 1.34770 * 120.00437 * 240.00343 * 12 2 1 15 15 O 1.21284 * 119.99858 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00085 * 180.02562 * 14 12 2 17 17 C 1.52993 * 109.47237 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.47423 * 54.99808 * 17 16 14 19 19 C 1.53003 * 109.47152 * 295.00056 * 17 16 14 20 20 C 1.53007 * 109.47074 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47182 * 60.00054 * 20 19 17 22 22 C 1.53005 * 109.46804 * 299.99684 * 21 20 19 23 23 C 1.53001 * 109.47284 * 60.00320 * 22 21 20 24 24 H 1.08996 * 109.47506 * 179.97438 * 23 22 21 25 25 O 1.42906 * 109.46855 * 59.99685 * 23 22 21 26 26 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 28 28 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47379 * 89.99285 * 13 12 2 31 31 H 1.08997 * 109.47046 * 209.99898 * 13 12 2 32 32 H 1.09005 * 109.46584 * 329.99866 * 13 12 2 33 33 H 1.09002 * 109.47087 * 299.99946 * 16 14 12 34 34 H 1.09003 * 109.47160 * 59.99984 * 16 14 12 35 35 H 1.09006 * 109.46450 * 299.99539 * 19 17 16 36 36 H 1.08991 * 109.47373 * 59.99635 * 19 17 16 37 37 H 1.09003 * 109.46692 * 179.97438 * 20 19 17 38 38 H 1.08996 * 109.46680 * 299.99508 * 20 19 17 39 39 H 1.09000 * 109.47269 * 59.99556 * 21 20 19 40 40 H 1.08997 * 109.47005 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.46871 * 180.02562 * 22 21 20 42 42 H 1.08999 * 109.47563 * 300.00242 * 22 21 20 43 43 H 0.96697 * 113.99896 * 60.00262 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 7 2.0184 -0.6905 1.1962 13 6 1.6646 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0857 1.1258 1.8916 16 6 3.2960 -0.7461 3.3135 17 6 4.1453 0.2158 4.1467 18 1 3.5667 1.1124 4.3687 19 6 5.4001 0.6004 3.3601 20 6 6.2497 1.5619 4.1937 21 6 6.6567 0.8800 5.5015 22 6 5.4019 0.4954 6.2880 23 6 4.5522 -0.4660 5.4546 24 1 3.6586 -0.7403 6.0150 25 8 5.3107 -1.6415 5.1630 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7087 1.1613 -3.4844 30 1 2.4159 -2.7377 0.9715 31 1 1.6240 -2.2852 2.5001 32 1 0.6906 -2.3002 0.9846 33 1 2.4485 -1.0891 3.9069 34 1 3.9018 -1.6022 3.0165 35 1 5.9788 -0.2963 3.1382 36 1 5.1102 1.0857 2.4283 37 1 7.1438 1.8355 3.6335 38 1 5.6712 2.4585 4.4160 39 1 7.2352 -0.0166 5.2791 40 1 7.2616 1.5651 6.0955 41 1 5.6918 0.0101 7.2199 42 1 4.8234 1.3921 6.5104 43 1 5.6029 -2.1257 5.9474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343277038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:05 Heat of formation + Delta-G solvation = -109.387189 kcal Electronic energy + Delta-G solvation = -21862.648834 eV Core-core repulsion = 18713.890292 eV Total energy + Delta-G solvation = -3148.758543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78917 -38.42643 -35.40919 -34.86038 -32.93459 -32.28202 -29.86801 -29.43234 -26.63571 -25.92167 -25.14467 -22.60694 -21.99058 -20.53791 -19.58064 -18.07484 -16.87344 -16.52516 -16.12902 -15.51406 -15.20543 -14.81355 -14.48346 -14.34373 -13.92155 -13.33889 -13.01460 -12.69566 -12.56240 -12.48242 -12.10755 -11.92548 -11.65518 -11.45841 -11.39767 -11.34837 -10.99062 -10.83563 -10.75990 -10.63929 -10.51944 -10.31578 -10.20094 -10.11738 -9.89499 -9.65220 -9.12040 -8.70814 -8.37088 -7.48727 -6.02952 -4.10486 3.29960 3.36187 3.38057 3.52496 4.05125 4.24931 4.43623 4.72610 4.76296 4.88903 5.17963 5.23631 5.28066 5.38099 5.43476 5.56454 5.57277 5.65895 5.74573 5.82774 5.86096 5.99203 6.03190 6.12438 6.18080 6.29422 6.33501 6.37350 6.40930 6.71611 6.79983 6.83465 6.87164 7.11352 7.51580 7.59068 7.63246 7.77481 8.07179 8.25789 8.63290 8.89572 9.17483 9.56222 11.02276 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.004494 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.959421 B = 6229.670755 C = 6424.042397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.596 5.596 13 C 0.088 3.912 14 C 0.502 3.498 15 O -0.553 6.553 16 C -0.131 4.131 17 C -0.059 4.059 18 H 0.085 0.915 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.109 3.891 24 H 0.051 0.949 25 O -0.558 6.558 26 H 0.029 0.971 27 H 0.010 0.990 28 H 0.093 0.907 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 -4.360 16.999 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.327 5.327 13 C -0.056 4.056 14 C 0.290 3.710 15 O -0.433 6.433 16 C -0.171 4.171 17 C -0.078 4.078 18 H 0.103 0.897 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.188 4.188 23 C 0.050 3.950 24 H 0.069 0.931 25 O -0.363 6.363 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.032 -3.441 16.104 17.537 hybrid contribution 0.302 -0.801 -0.260 0.895 sum 6.334 -4.242 15.844 17.582 Atomic orbital electron populations 1.22090 0.98409 0.99261 1.00751 1.18908 0.90744 0.94544 0.80160 0.91929 1.21336 1.31577 1.12898 0.90355 0.92361 1.24895 0.94987 0.95014 0.98940 1.69885 1.36480 1.22730 1.23647 0.86504 0.78633 0.79890 0.82414 1.20638 1.19943 1.21164 1.48243 1.49166 1.11590 1.23673 1.21534 1.01406 0.83371 0.99297 1.20477 0.78882 0.87147 0.84532 1.90596 1.58215 1.17255 1.77199 1.21675 1.00031 0.99879 0.95533 1.20899 0.96811 0.97307 0.92771 0.89675 1.21627 0.94802 0.99300 0.99643 1.21510 0.99623 0.98575 0.95740 1.21451 0.96786 1.00469 0.96467 1.22224 0.98058 1.00339 0.98168 1.21863 0.92324 0.84972 0.95848 0.93118 1.86580 1.74345 1.39393 1.35944 0.95182 0.97066 0.88868 0.92768 0.93415 0.92979 0.91075 0.90137 0.88866 0.92014 0.89496 0.92334 0.92280 0.91568 0.92747 0.92186 0.91158 0.78441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.95 37.16 0.33 -3.24 16 2 C 0.26 6.70 2.64 -69.09 -0.18 6.52 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.45 8.37 -34.44 -0.29 -14.74 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.60 -13.03 2.75 -175.26 -0.48 -13.51 16 13 C 0.09 1.53 9.48 59.85 0.57 2.10 16 14 C 0.50 10.51 7.39 -10.99 -0.08 10.43 16 15 O -0.55 -13.47 13.29 5.55 0.07 -13.40 16 16 C -0.13 -2.05 3.51 -27.89 -0.10 -2.14 16 17 C -0.06 -0.85 1.67 -90.62 -0.15 -1.00 16 18 H 0.09 1.30 7.96 -51.93 -0.41 0.89 16 19 C -0.12 -1.81 4.80 -26.73 -0.13 -1.94 16 20 C -0.12 -1.51 5.92 -26.73 -0.16 -1.66 16 21 C -0.11 -1.20 5.78 -26.73 -0.15 -1.36 16 22 C -0.15 -1.43 5.64 -26.73 -0.15 -1.58 16 23 C 0.11 1.18 3.21 -26.73 -0.09 1.10 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 O -0.56 -5.99 11.39 -35.23 -0.40 -6.39 16 26 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 32 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 33 H 0.08 1.09 7.40 -51.93 -0.38 0.70 16 34 H 0.09 1.45 7.80 -51.93 -0.41 1.04 16 35 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 36 H 0.09 1.66 5.95 -51.93 -0.31 1.36 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.37 2.38 9.08 45.56 0.41 2.79 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -31.60 329.41 -7.41 -39.02 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.50 Total: 3.66 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.67 Total: -5.83 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.14 Total: -38.42 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.33 Total: -19.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.60 -7.41 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343277038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.370 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds