Wall clock time and date at job start Mon Mar 30 2020 00:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.46506 * 119.99620 * 60.00694 * 12 2 1 14 14 C 1.34770 * 120.00437 * 240.00343 * 12 2 1 15 15 O 1.21284 * 119.99858 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00085 * 180.02562 * 14 12 2 17 17 C 1.52993 * 109.47237 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.47423 * 54.99808 * 17 16 14 19 19 C 1.53003 * 109.47152 * 295.00056 * 17 16 14 20 20 C 1.53007 * 109.47074 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47182 * 60.00054 * 20 19 17 22 22 C 1.53005 * 109.46804 * 299.99684 * 21 20 19 23 23 C 1.53001 * 109.47284 * 60.00320 * 22 21 20 24 24 H 1.08996 * 109.47506 * 179.97438 * 23 22 21 25 25 O 1.42906 * 109.46855 * 59.99685 * 23 22 21 26 26 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 28 28 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47379 * 89.99285 * 13 12 2 31 31 H 1.08997 * 109.47046 * 209.99898 * 13 12 2 32 32 H 1.09005 * 109.46584 * 329.99866 * 13 12 2 33 33 H 1.09002 * 109.47087 * 299.99946 * 16 14 12 34 34 H 1.09003 * 109.47160 * 59.99984 * 16 14 12 35 35 H 1.09006 * 109.46450 * 299.99539 * 19 17 16 36 36 H 1.08991 * 109.47373 * 59.99635 * 19 17 16 37 37 H 1.09003 * 109.46692 * 179.97438 * 20 19 17 38 38 H 1.08996 * 109.46680 * 299.99508 * 20 19 17 39 39 H 1.09000 * 109.47269 * 59.99556 * 21 20 19 40 40 H 1.08997 * 109.47005 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.46871 * 180.02562 * 22 21 20 42 42 H 1.08999 * 109.47563 * 300.00242 * 22 21 20 43 43 H 0.96697 * 113.99896 * 60.00262 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 7 2.0184 -0.6905 1.1962 13 6 1.6646 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0857 1.1258 1.8916 16 6 3.2960 -0.7461 3.3135 17 6 4.1453 0.2158 4.1467 18 1 3.5667 1.1124 4.3687 19 6 5.4001 0.6004 3.3601 20 6 6.2497 1.5619 4.1937 21 6 6.6567 0.8800 5.5015 22 6 5.4019 0.4954 6.2880 23 6 4.5522 -0.4660 5.4546 24 1 3.6586 -0.7403 6.0150 25 8 5.3107 -1.6415 5.1630 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7087 1.1613 -3.4844 30 1 2.4159 -2.7377 0.9715 31 1 1.6240 -2.2852 2.5001 32 1 0.6906 -2.3002 0.9846 33 1 2.4485 -1.0891 3.9069 34 1 3.9018 -1.6022 3.0165 35 1 5.9788 -0.2963 3.1382 36 1 5.1102 1.0857 2.4283 37 1 7.1438 1.8355 3.6335 38 1 5.6712 2.4585 4.4160 39 1 7.2352 -0.0166 5.2791 40 1 7.2616 1.5651 6.0955 41 1 5.6918 0.0101 7.2199 42 1 4.8234 1.3921 6.5104 43 1 5.6029 -2.1257 5.9474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343277038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:05 Heat of formation + Delta-G solvation = -130.770138 kcal Electronic energy + Delta-G solvation = -21863.576069 eV Core-core repulsion = 18713.890292 eV Total energy + Delta-G solvation = -3149.685777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12745 -39.71267 -37.14444 -35.83388 -34.83269 -33.58488 -31.37682 -30.72980 -27.91826 -27.48941 -27.21726 -23.70652 -23.28321 -22.02185 -20.60790 -19.73423 -18.50299 -17.83718 -17.63771 -17.06875 -16.52669 -16.24648 -16.10193 -15.39757 -15.12175 -14.69105 -14.58273 -14.25653 -13.97806 -13.63215 -13.47231 -13.32071 -13.10658 -13.00027 -12.83911 -12.71153 -12.62228 -12.49739 -12.33361 -12.17349 -12.09073 -11.81638 -11.54515 -11.37823 -11.17420 -11.02402 -10.57120 -10.49238 -10.28219 -9.27321 -8.14931 -6.31629 1.39627 1.41142 1.51162 1.88911 2.34603 2.53930 3.12436 3.45012 3.73468 3.78146 3.97435 4.01288 4.22654 4.35768 4.41032 4.45730 4.55500 4.61254 4.67460 4.69087 4.77292 4.81106 4.85202 4.88864 4.99811 5.04434 5.08393 5.11964 5.15351 5.29652 5.33249 5.37764 5.46069 5.56715 5.61164 5.64683 5.70537 6.05815 6.17210 6.76697 6.90048 7.09150 7.34035 7.55163 8.89167 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.004494 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.959421 B = 6229.670755 C = 6424.042397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.007 0.993 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.283 1.283 10 H -0.262 1.262 11 H -0.278 1.278 12 N -0.606 5.606 13 C 0.085 3.915 14 C 0.490 3.510 15 O -0.598 6.598 16 C -0.115 4.115 17 C -0.062 4.062 18 H 0.070 0.930 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.147 4.147 23 C 0.118 3.882 24 H 0.074 0.926 25 O -0.573 6.573 26 H 0.047 0.953 27 H 0.020 0.980 28 H 0.067 0.933 29 H 0.264 0.736 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.570 -6.713 19.161 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.025 0.975 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.209 1.209 10 H -0.186 1.186 11 H -0.203 1.203 12 N -0.336 5.336 13 C -0.057 4.057 14 C 0.280 3.720 15 O -0.481 6.481 16 C -0.155 4.155 17 C -0.081 4.081 18 H 0.089 0.911 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.185 4.185 23 C 0.059 3.941 24 H 0.092 0.908 25 O -0.382 6.382 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.498 -5.839 18.304 20.281 hybrid contribution 0.189 -0.026 -0.939 0.959 sum 6.687 -5.864 17.364 19.510 Atomic orbital electron populations 1.21866 0.97188 1.00068 0.99893 1.18501 0.91621 0.92152 0.81954 0.97511 1.21581 1.31769 1.12960 0.91336 0.92485 1.25742 0.95079 0.95681 1.02012 1.70027 1.37327 1.23949 1.24377 0.85465 0.77799 0.79203 0.78614 1.20904 1.18618 1.20337 1.48287 1.49415 1.13350 1.22573 1.21773 1.01228 0.80518 1.02225 1.21536 0.77931 0.86884 0.85694 1.90580 1.59530 1.19613 1.78347 1.21656 1.01209 0.99502 0.93120 1.20911 0.95611 0.97080 0.94459 0.91120 1.21503 0.96042 0.99083 0.98415 1.21506 0.98917 0.98011 0.97043 1.21415 0.97706 1.00476 0.95060 1.22228 0.97073 1.00320 0.98860 1.21703 0.93631 0.85264 0.93493 0.90845 1.86526 1.74429 1.39370 1.37827 0.93360 0.96102 0.91477 0.92660 0.93160 0.88661 0.91220 0.86885 0.88147 0.92641 0.94318 0.92633 0.92908 0.91569 0.91114 0.89125 0.91161 0.75941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 8.95 71.98 0.64 -5.90 16 2 C 0.26 14.06 2.64 44.24 0.12 14.17 16 3 H 0.01 0.45 6.90 -2.38 -0.02 0.43 16 4 C -0.54 -30.34 8.37 25.60 0.21 -30.12 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -54.23 11.32 21.45 0.24 -53.99 16 8 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 9 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.61 -26.67 2.75 -826.78 -2.28 -28.95 16 13 C 0.08 2.80 9.48 127.77 1.21 4.01 16 14 C 0.49 20.89 7.39 87.66 0.65 21.53 16 15 O -0.60 -30.95 13.29 -3.04 -0.04 -30.99 16 16 C -0.12 -3.41 3.51 29.85 0.10 -3.31 16 17 C -0.06 -1.71 1.67 -10.79 -0.02 -1.73 16 18 H 0.07 2.16 7.96 -2.39 -0.02 2.14 16 19 C -0.11 -3.60 4.80 30.60 0.15 -3.45 16 20 C -0.12 -3.02 5.92 30.60 0.18 -2.84 16 21 C -0.11 -2.04 5.78 30.60 0.18 -1.86 16 22 C -0.15 -2.28 5.64 30.60 0.17 -2.11 16 23 C 0.12 2.17 3.21 30.60 0.10 2.27 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 O -0.57 -10.20 11.39 -148.98 -1.70 -11.90 16 26 H 0.05 2.16 6.66 -2.39 -0.02 2.15 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 29 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 2.29 6.44 -2.39 -0.02 2.27 16 32 H 0.07 2.30 6.43 -2.38 -0.02 2.29 16 33 H 0.11 2.62 7.40 -2.39 -0.02 2.60 16 34 H 0.10 2.89 7.80 -2.39 -0.02 2.87 16 35 H 0.05 1.79 7.68 -2.38 -0.02 1.77 16 36 H 0.04 1.59 5.95 -2.39 -0.01 1.58 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.26 7.68 -2.39 -0.02 1.24 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.39 3.28 9.08 -74.06 -0.67 2.61 16 Total: -1.00 -72.82 329.41 2.72 -70.11 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.32 Total: 17.55 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.15 Total: -8.09 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.03 Total: -82.94 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.74 Total: -42.88 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -72.82 2.72 -70.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343277038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.664 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds