Wall clock time and date at job start Mon Mar 30 2020 01:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47347 * 2 1 4 4 C 1.34228 * 116.99653 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00540 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99652 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.47159 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47264 * 179.97438 * 7 6 4 9 9 C 1.53008 * 109.47453 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.08994 * 109.47400 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46476 * 300.00272 * 1 2 3 25 25 H 1.09004 * 109.46920 * 59.99758 * 1 2 3 26 26 H 1.09005 * 109.47189 * 239.99922 * 2 1 3 27 27 H 1.09000 * 109.47393 * 120.00353 * 2 1 3 28 28 H 1.09000 * 109.47220 * 59.99503 * 6 4 3 29 29 H 1.09000 * 109.46833 * 299.99902 * 6 4 3 30 30 H 1.09000 * 109.47362 * 59.99709 * 7 6 4 31 31 H 1.09000 * 109.47266 * 299.99756 * 7 6 4 32 32 H 1.09005 * 109.47229 * 60.00092 * 8 7 6 33 33 H 1.09000 * 109.47597 * 300.00382 * 8 7 6 34 34 H 1.09001 * 109.46702 * 60.00335 * 9 8 7 35 35 H 1.08994 * 109.46972 * 300.00319 * 9 8 7 36 36 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 37 37 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 38 38 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 39 39 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 40 40 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 41 41 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 42 42 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 43 43 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4487 2.8572 -0.0001 8 6 6.0336 4.2709 -0.0002 9 6 7.5615 4.1909 0.0003 10 6 8.1464 5.6047 -0.0004 11 7 9.6093 5.5279 0.0007 12 6 10.2922 5.4930 1.1871 13 1 11.1956 4.9075 1.2730 14 6 9.8234 6.2102 2.2792 15 7 9.0179 7.2350 2.0968 16 14 10.3358 5.7210 4.0076 17 1 11.8133 5.8074 4.1291 18 1 9.7034 6.6380 4.9896 19 1 9.8975 4.3281 4.2782 20 6 10.3417 5.4886 -1.2676 21 6 11.8622 5.3322 -1.2007 22 6 11.2474 6.6767 -1.5974 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.5853 3.4690 0.8904 29 1 3.5845 3.4699 -0.8895 30 1 5.7846 2.3254 -0.8903 31 1 5.7847 2.3247 0.8896 32 1 5.6977 4.8032 0.8898 33 1 5.6976 4.8032 -0.8901 34 1 7.8977 3.6586 -0.8895 35 1 7.8972 3.6589 0.8904 36 1 7.8102 6.1373 0.8891 37 1 7.8107 6.1363 -0.8909 38 1 8.6414 7.6980 2.8615 39 1 9.8221 5.0067 -2.0958 40 1 12.3176 5.2581 -0.2131 41 1 12.3430 4.7477 -1.9851 42 1 11.3241 6.9762 -2.6427 43 1 11.2982 7.4878 -0.8711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344604591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:55 Heat of formation + Delta-G solvation = -66.867478 kcal Electronic energy + Delta-G solvation = -20281.642728 eV Core-core repulsion = 17134.727978 eV Total energy + Delta-G solvation = -3146.914750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55817 -37.18621 -36.88942 -35.33503 -33.45325 -32.11945 -31.33586 -29.56049 -26.38520 -24.37363 -23.34037 -21.96995 -21.32852 -20.52649 -20.42822 -19.54638 -17.71512 -16.95086 -16.27264 -16.17278 -15.53401 -15.23872 -14.57215 -14.28984 -13.78795 -13.67327 -13.24972 -12.98483 -12.83222 -12.73728 -12.14875 -11.96868 -11.85594 -11.66174 -11.40240 -11.26973 -10.98094 -10.75691 -10.71307 -10.61721 -10.52373 -10.42311 -10.32717 -10.07688 -9.80335 -9.56615 -9.42876 -9.18750 -8.41252 -6.51281 -5.73507 -3.34061 2.14293 2.54215 3.38177 3.43967 3.46859 4.48094 4.56022 4.62758 4.71307 4.88939 4.97478 4.99029 5.02512 5.29251 5.34916 5.39178 5.45560 5.51869 5.62435 5.66039 5.74532 5.96213 6.01296 6.16449 6.17384 6.25415 6.31965 6.45122 6.48905 6.53949 6.60967 6.70673 6.87658 6.91714 7.09927 7.25958 7.31385 7.67531 7.77009 7.84821 8.52392 9.20723 9.84239 10.40071 11.21316 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021234 B = 0.003339 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.337944 B = 8384.782451 C = 9165.944906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.508 6.508 6 C -0.113 4.113 7 C -0.107 4.107 8 C -0.114 4.114 9 C -0.133 4.133 10 C 0.145 3.855 11 N -0.554 5.554 12 C -0.254 4.254 13 H 0.064 0.936 14 C 0.009 3.991 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.122 3.878 21 C -0.198 4.198 22 C -0.223 4.223 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.023 0.977 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.360 -9.306 -5.274 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.395 6.395 6 C -0.151 4.151 7 C -0.145 4.145 8 C -0.152 4.152 9 C -0.173 4.173 10 C 0.020 3.980 11 N -0.270 5.270 12 C -0.383 4.383 13 H 0.082 0.918 14 C -0.191 4.191 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.013 3.987 21 C -0.236 4.236 22 C -0.265 4.265 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.220 -9.468 -5.125 17.836 hybrid contribution 0.307 -0.393 0.899 1.028 sum -13.913 -9.861 -4.225 17.569 Atomic orbital electron populations 1.21804 0.92704 1.02889 1.03531 1.22999 0.95309 0.80533 1.02564 1.86525 1.25094 1.32176 1.84239 1.24084 0.80208 0.93379 0.72025 1.90673 1.60348 1.43390 1.45116 1.21552 0.97712 0.90019 1.05792 1.21501 0.90582 0.98894 1.03521 1.21540 0.97345 0.94617 1.01740 1.22145 0.92391 1.01712 1.01025 1.20996 0.82564 0.92610 1.01872 1.43455 1.00872 1.83159 0.99560 1.19030 1.09582 1.21976 0.87759 0.91833 1.25094 1.00434 0.94513 0.99021 1.70047 1.34991 1.17998 1.29722 0.86496 0.78404 0.78070 0.84628 1.20765 1.21601 1.20874 1.21209 0.88518 0.98372 0.90603 1.23027 0.98061 1.00550 1.01979 1.23367 1.10199 0.93417 0.99474 0.90332 0.91461 0.91480 0.91325 0.91299 0.87626 0.87732 0.91399 0.91181 0.91904 0.92438 0.93915 0.92244 0.88295 0.95886 0.93607 0.89675 0.88549 0.90850 0.91326 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.11 10.22 -39.25 -0.40 -4.51 16 4 C 0.46 5.87 7.96 36.01 0.29 6.15 16 5 O -0.51 -8.02 15.73 -18.75 -0.29 -8.32 16 6 C -0.11 -1.24 5.81 -27.88 -0.16 -1.41 16 7 C -0.11 -1.47 4.50 -26.74 -0.12 -1.59 16 8 C -0.11 -1.74 5.21 -26.73 -0.14 -1.88 16 9 C -0.13 -2.57 5.54 -26.73 -0.15 -2.71 16 10 C 0.15 3.33 5.34 -4.04 -0.02 3.31 16 11 N -0.55 -13.79 2.78 -165.67 -0.46 -14.25 16 12 C -0.25 -6.87 8.63 -15.06 -0.13 -7.00 16 13 H 0.06 1.73 6.55 -52.49 -0.34 1.39 16 14 C 0.01 0.25 4.96 -17.43 -0.09 0.17 16 15 N -0.89 -25.07 11.33 55.49 0.63 -24.44 16 16 Si 0.89 21.51 29.61 -169.99 -5.03 16.48 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.12 2.68 6.56 -67.93 -0.45 2.23 16 21 C -0.20 -4.03 9.80 -26.69 -0.26 -4.29 16 22 C -0.22 -4.68 10.36 -26.70 -0.28 -4.96 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 27 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.10 2.55 5.35 -51.93 -0.28 2.27 16 37 H 0.02 0.50 8.07 -51.93 -0.42 0.08 16 38 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 39 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.10 2.13 6.37 -51.93 -0.33 1.80 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -30.36 355.12 -8.79 -39.16 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.69 Total: 2.30 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -0.89 Total: -11.76 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.17 Total: -38.70 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.70 Total: -12.83 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.36 -8.79 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344604591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.712 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds