Wall clock time and date at job start Mon Mar 30 2020 01:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47347 * 2 1 4 4 C 1.34228 * 116.99653 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00540 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99652 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.47159 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47264 * 179.97438 * 7 6 4 9 9 C 1.53008 * 109.47453 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.08994 * 109.47400 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46476 * 300.00272 * 1 2 3 25 25 H 1.09004 * 109.46920 * 59.99758 * 1 2 3 26 26 H 1.09005 * 109.47189 * 239.99922 * 2 1 3 27 27 H 1.09000 * 109.47393 * 120.00353 * 2 1 3 28 28 H 1.09000 * 109.47220 * 59.99503 * 6 4 3 29 29 H 1.09000 * 109.46833 * 299.99902 * 6 4 3 30 30 H 1.09000 * 109.47362 * 59.99709 * 7 6 4 31 31 H 1.09000 * 109.47266 * 299.99756 * 7 6 4 32 32 H 1.09005 * 109.47229 * 60.00092 * 8 7 6 33 33 H 1.09000 * 109.47597 * 300.00382 * 8 7 6 34 34 H 1.09001 * 109.46702 * 60.00335 * 9 8 7 35 35 H 1.08994 * 109.46972 * 300.00319 * 9 8 7 36 36 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 37 37 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 38 38 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 39 39 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 40 40 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 41 41 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 42 42 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 43 43 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4487 2.8572 -0.0001 8 6 6.0336 4.2709 -0.0002 9 6 7.5615 4.1909 0.0003 10 6 8.1464 5.6047 -0.0004 11 7 9.6093 5.5279 0.0007 12 6 10.2922 5.4930 1.1871 13 1 11.1956 4.9075 1.2730 14 6 9.8234 6.2102 2.2792 15 7 9.0179 7.2350 2.0968 16 14 10.3358 5.7210 4.0076 17 1 11.8133 5.8074 4.1291 18 1 9.7034 6.6380 4.9896 19 1 9.8975 4.3281 4.2782 20 6 10.3417 5.4886 -1.2676 21 6 11.8622 5.3322 -1.2007 22 6 11.2474 6.6767 -1.5974 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.5853 3.4690 0.8904 29 1 3.5845 3.4699 -0.8895 30 1 5.7846 2.3254 -0.8903 31 1 5.7847 2.3247 0.8896 32 1 5.6977 4.8032 0.8898 33 1 5.6976 4.8032 -0.8901 34 1 7.8977 3.6586 -0.8895 35 1 7.8972 3.6589 0.8904 36 1 7.8102 6.1373 0.8891 37 1 7.8107 6.1363 -0.8909 38 1 8.6414 7.6980 2.8615 39 1 9.8221 5.0067 -2.0958 40 1 12.3176 5.2581 -0.2131 41 1 12.3430 4.7477 -1.9851 42 1 11.3241 6.9762 -2.6427 43 1 11.2982 7.4878 -0.8711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344604591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:55 Heat of formation + Delta-G solvation = -81.677180 kcal Electronic energy + Delta-G solvation = -20282.284925 eV Core-core repulsion = 17134.727978 eV Total energy + Delta-G solvation = -3147.556946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52586 -38.88209 -37.92074 -36.67442 -35.16664 -33.27978 -32.56868 -31.12798 -27.89906 -26.06062 -24.31823 -23.24281 -22.91436 -21.95559 -21.52374 -21.33221 -18.69080 -18.15377 -17.86067 -17.25860 -17.18812 -16.47289 -16.38422 -15.71731 -15.18317 -14.67135 -14.56617 -14.24858 -14.16342 -13.68151 -13.64597 -13.19962 -12.99472 -12.89380 -12.78761 -12.60805 -12.51523 -12.48425 -12.24192 -12.04729 -11.81577 -11.71253 -11.61893 -11.51366 -11.45169 -11.29126 -11.16115 -10.86137 -10.43681 -8.50290 -7.76458 -5.41752 1.16714 1.44644 1.47113 1.53654 1.69873 2.50521 3.15384 3.43348 3.51491 3.70187 3.96536 3.98079 4.04913 4.07946 4.30890 4.31563 4.39401 4.42389 4.49317 4.57180 4.67955 4.72274 4.80295 4.87222 4.91439 4.93159 5.01380 5.08604 5.10480 5.13985 5.20065 5.32582 5.37878 5.45867 5.51020 5.53878 5.64757 5.71257 5.94760 6.48136 6.72361 7.18612 7.90166 8.39041 9.13301 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021234 B = 0.003339 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.337944 B = 8384.782451 C = 9165.944906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.363 6.363 4 C 0.462 3.538 5 O -0.546 6.546 6 C -0.107 4.107 7 C -0.099 4.099 8 C -0.104 4.104 9 C -0.120 4.120 10 C 0.146 3.854 11 N -0.573 5.573 12 C -0.259 4.259 13 H 0.056 0.944 14 C -0.037 4.037 15 N -0.912 5.912 16 Si 0.950 3.050 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.101 3.899 21 C -0.185 4.185 22 C -0.218 4.218 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.029 0.971 38 H 0.251 0.749 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.416 -9.936 -6.402 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.280 6.280 4 C 0.307 3.693 5 O -0.436 6.436 6 C -0.144 4.144 7 C -0.137 4.137 8 C -0.142 4.142 9 C -0.160 4.160 10 C 0.020 3.980 11 N -0.291 5.291 12 C -0.389 4.389 13 H 0.073 0.927 14 C -0.234 4.234 15 N -0.557 5.557 16 Si 0.778 3.222 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.207 1.207 20 C -0.007 4.007 21 C -0.223 4.223 22 C -0.259 4.259 23 H 0.117 0.883 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.287 -10.101 -6.266 19.365 hybrid contribution 0.648 -0.213 1.180 1.363 sum -14.639 -10.314 -5.086 18.616 Atomic orbital electron populations 1.21819 0.90290 1.04344 1.03791 1.23279 0.97205 0.79469 1.02357 1.86524 1.24189 1.33531 1.83708 1.24374 0.80463 0.93534 0.70922 1.90661 1.61206 1.44665 1.47064 1.21527 0.95445 0.89481 1.07973 1.21326 0.92704 0.97314 1.02376 1.21424 0.94279 0.95858 1.02643 1.21934 0.95206 0.98929 0.99885 1.20954 0.82005 0.94360 1.00655 1.43698 1.01766 1.83540 1.00079 1.19173 1.09357 1.21267 0.89124 0.92658 1.25709 1.01058 0.94710 1.01909 1.70159 1.36321 1.18979 1.30198 0.85618 0.78019 0.77565 0.80954 1.20468 1.21577 1.20705 1.21532 0.89446 0.99500 0.90238 1.23036 0.96948 1.00401 1.01941 1.23276 1.09875 0.92353 1.00377 0.88295 0.91286 0.91076 0.91441 0.91732 0.85853 0.84985 0.91881 0.93132 0.92169 0.90318 0.93302 0.95023 0.91238 0.95222 0.93958 0.87118 0.90932 0.87112 0.87921 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 71.98 0.74 -0.78 16 2 C 0.05 0.86 6.19 71.98 0.45 1.30 16 3 O -0.36 -7.68 10.22 -51.40 -0.53 -8.20 16 4 C 0.46 11.24 7.96 71.24 0.57 11.80 16 5 O -0.55 -17.11 15.73 21.97 0.35 -16.77 16 6 C -0.11 -2.12 5.81 29.85 0.17 -1.95 16 7 C -0.10 -2.61 4.50 30.59 0.14 -2.47 16 8 C -0.10 -3.03 5.21 30.60 0.16 -2.87 16 9 C -0.12 -4.60 5.54 30.60 0.17 -4.43 16 10 C 0.15 6.70 5.34 86.38 0.46 7.16 16 11 N -0.57 -28.71 2.78 -678.05 -1.88 -30.59 16 12 C -0.26 -14.24 8.63 84.03 0.73 -13.52 16 13 H 0.06 3.08 6.55 -2.91 -0.02 3.06 16 14 C -0.04 -2.03 4.96 84.86 0.42 -1.61 16 15 N -0.91 -52.87 11.33 21.65 0.25 -52.62 16 16 Si 0.95 44.99 29.61 68.60 2.03 47.02 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 C 0.10 4.31 6.56 44.99 0.30 4.60 16 21 C -0.19 -7.24 9.80 30.62 0.30 -6.94 16 22 C -0.22 -8.86 10.36 30.62 0.32 -8.54 16 23 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 27 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 32 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 3.67 5.35 -2.39 -0.01 3.65 16 37 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 38 H 0.25 14.07 8.32 -92.71 -0.77 13.30 16 39 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 40 H 0.07 3.19 6.37 -2.39 -0.02 3.18 16 41 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -66.72 355.12 6.08 -60.64 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.95 Total: 18.76 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.91 Total: -18.24 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.64 Total: -83.21 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.18 Total: -24.97 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.72 6.08 -60.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344604591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.036 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds