Wall clock time and date at job start Mon Mar 30 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46941 * 299.99657 * 6 4 3 8 8 C 1.52997 * 109.47493 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46769 * 59.99990 * 8 7 6 10 10 N 1.46896 * 109.46933 * 60.00714 * 9 8 7 11 11 C 1.46895 * 111.00289 * 84.99861 * 10 9 8 12 12 C 1.53008 * 109.46895 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46873 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99781 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99905 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99844 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46642 * 90.01092 * 17 15 13 19 19 H 1.48498 * 109.46802 * 210.00560 * 17 15 13 20 20 H 1.48500 * 109.47462 * 330.00797 * 17 15 13 21 21 C 1.52998 * 109.47286 * 299.99910 * 9 8 7 22 22 C 1.52997 * 109.46630 * 60.00179 * 21 9 8 23 23 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 29 29 H 1.09003 * 109.47318 * 300.00255 * 7 6 4 30 30 H 1.09008 * 109.46908 * 59.99812 * 7 6 4 31 31 H 1.09003 * 109.47116 * 300.00464 * 8 7 6 32 32 H 1.09001 * 109.47677 * 179.97438 * 8 7 6 33 33 H 1.09003 * 109.46515 * 179.97438 * 9 8 7 34 34 H 1.00897 * 111.00076 * 321.03876 * 10 9 8 35 35 H 1.09002 * 109.47044 * 299.99617 * 11 10 9 36 36 H 1.09003 * 109.47339 * 60.00154 * 11 10 9 37 37 H 1.09002 * 109.47007 * 299.99695 * 12 11 10 38 38 H 1.08999 * 109.47280 * 59.99588 * 12 11 10 39 39 H 0.97003 * 119.99764 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46861 * 300.00418 * 21 9 8 41 41 H 1.08995 * 109.47244 * 179.97438 * 21 9 8 42 42 H 1.09005 * 109.47056 * 179.97438 * 22 21 9 43 43 H 1.09000 * 109.47303 * 60.00510 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 3.4495 3.6848 -1.2481 8 6 4.0336 5.0989 -1.2473 9 6 5.5616 5.0193 -1.2464 10 7 6.0153 4.3029 -2.4459 11 6 6.1262 5.2139 -3.5928 12 6 6.6008 4.4332 -4.8202 13 6 6.7152 5.3679 -5.9967 14 1 6.4732 6.4141 -5.8808 15 6 7.1278 4.8873 -7.2214 16 7 7.2272 5.7029 -8.2483 17 14 7.5456 3.0777 -7.4220 18 1 6.3258 2.3291 -7.8180 19 1 8.5841 2.9230 -8.4722 20 1 8.0591 2.5426 -6.1354 21 6 6.0327 4.2722 0.0029 22 6 5.4485 2.8582 0.0020 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.5843 3.4695 0.8911 29 1 3.7857 3.1529 -2.1381 30 1 2.3609 3.7418 -1.2485 31 1 3.6970 5.6305 -0.3573 32 1 3.6984 5.6311 -2.1375 33 1 5.9778 6.0268 -1.2463 34 1 5.4043 3.5282 -2.6571 35 1 5.1527 5.6589 -3.7989 36 1 6.8444 6.0012 -3.3635 37 1 7.5744 3.9886 -4.6138 38 1 5.8831 3.6456 -5.0497 39 1 7.5178 5.3649 -9.1098 40 1 5.6960 4.8039 0.8928 41 1 7.1212 4.2152 0.0033 42 1 5.7844 2.3256 0.8918 43 1 5.7852 2.3264 -0.8880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346315749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:58 Heat of formation + Delta-G solvation = -115.388636 kcal Electronic energy + Delta-G solvation = -21082.498096 eV Core-core repulsion = 17933.479311 eV Total energy + Delta-G solvation = -3149.018785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89549 -38.97210 -36.79216 -34.82489 -32.80094 -32.02655 -30.88811 -30.68051 -28.32213 -24.71128 -23.82545 -22.93610 -22.61745 -20.83213 -20.36674 -18.99043 -17.77918 -16.79202 -16.69519 -16.65877 -15.87582 -14.73176 -14.59519 -14.30278 -14.08742 -13.86563 -13.61897 -13.21505 -13.16830 -12.73011 -12.55651 -12.44575 -12.26715 -12.18427 -11.89983 -11.85241 -11.43499 -11.24621 -10.99550 -10.79536 -10.77039 -10.63500 -10.36754 -10.14710 -10.00602 -9.83384 -9.62243 -9.20686 -8.51763 -7.86525 -6.02785 -4.00894 2.07196 2.48049 3.33937 3.41541 3.48340 4.36483 4.48381 4.51011 4.57760 4.63984 4.68255 4.74657 4.95581 4.96914 5.08521 5.17802 5.31973 5.33897 5.37249 5.42300 5.43864 5.46138 5.65111 5.66113 5.77326 5.93626 6.00253 6.04616 6.15088 6.23013 6.25904 6.28472 6.39542 6.45392 6.80559 7.18261 7.40896 7.61755 7.66399 7.79465 7.94395 8.55037 9.01439 9.60024 11.10548 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.004108 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.930027 B = 6813.610595 C = 7531.879612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.506 6.506 6 C -0.076 4.076 7 C -0.112 4.112 8 C -0.148 4.148 9 C 0.082 3.918 10 N -0.688 5.688 11 C 0.073 3.927 12 C -0.011 4.011 13 C -0.520 4.520 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.263 1.263 21 C -0.103 4.103 22 C -0.103 4.103 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.334 0.666 35 H 0.021 0.979 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.007 0.993 39 H 0.263 0.737 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 -7.381 20.502 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.393 6.393 6 C -0.095 4.095 7 C -0.150 4.150 8 C -0.187 4.187 9 C -0.029 4.029 10 N -0.320 5.320 11 C -0.055 4.055 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.187 1.187 21 C -0.141 4.141 22 C -0.141 4.141 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.048 -7.650 20.464 24.481 hybrid contribution -0.789 -0.970 -0.534 1.360 sum -11.837 -8.620 19.930 24.731 Atomic orbital electron populations 1.21804 0.92632 1.02940 1.03557 1.23022 0.95378 0.80423 1.02586 1.86515 1.24835 1.32213 1.84022 1.23947 0.80377 0.92948 0.71988 1.90671 1.60395 1.43212 1.44985 1.21173 0.97448 0.89084 1.01828 1.21526 1.01143 0.96272 0.96032 1.22207 0.97817 0.95905 1.02780 1.21587 0.91920 0.97871 0.91520 1.60761 1.54922 1.11875 1.04469 1.21981 0.98751 0.95033 0.89755 1.19549 0.96538 0.95979 0.92768 1.21077 1.45311 0.96600 0.92885 0.91125 1.25008 0.94890 0.97718 0.95809 1.69919 1.48022 1.35176 1.01243 0.86763 0.78410 0.85855 0.78214 1.20442 1.21426 1.18723 1.21534 1.01388 0.94554 0.96671 1.21431 0.90600 0.98211 1.03859 0.91545 0.91346 0.90293 0.91170 0.91372 0.87615 0.91125 0.90579 0.91366 0.91047 0.90274 0.84577 0.96039 0.91754 0.95672 0.97494 0.92756 0.92101 0.90593 0.91489 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -3.99 10.12 -39.24 -0.40 -4.39 16 4 C 0.46 5.74 7.26 36.00 0.26 6.00 16 5 O -0.51 -7.65 15.73 -18.76 -0.30 -7.95 16 6 C -0.08 -0.80 2.63 -91.77 -0.24 -1.04 16 7 C -0.11 -1.22 4.88 -26.73 -0.13 -1.35 16 8 C -0.15 -1.64 5.52 -26.73 -0.15 -1.79 16 9 C 0.08 1.05 2.86 -67.71 -0.19 0.85 16 10 N -0.69 -11.28 5.77 -106.72 -0.62 -11.89 16 11 C 0.07 1.45 5.42 -3.82 -0.02 1.43 16 12 C -0.01 -0.26 4.30 -27.88 -0.12 -0.38 16 13 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 17 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 20 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 21 C -0.10 -1.14 5.64 -26.73 -0.15 -1.29 16 22 C -0.10 -1.19 4.26 -26.73 -0.11 -1.31 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 27 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.89 6.26 -51.93 -0.33 0.56 16 30 H 0.08 0.76 8.11 -51.92 -0.42 0.34 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 33 H 0.08 1.04 7.80 -51.93 -0.40 0.63 16 34 H 0.33 5.41 5.57 -39.29 -0.22 5.19 16 35 H 0.02 0.42 7.43 -51.93 -0.39 0.04 16 36 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 37 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 38 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.08 1.14 7.17 -51.93 -0.37 0.76 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -32.27 338.44 -8.29 -40.56 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.51 Total: 0.59 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -0.67 Total: -12.14 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.16 Total: -39.33 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.69 Total: -12.34 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.27 -8.29 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346315749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.833 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds