Wall clock time and date at job start Mon Mar 30 2020 01:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46941 * 299.99657 * 6 4 3 8 8 C 1.52997 * 109.47493 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46769 * 59.99990 * 8 7 6 10 10 N 1.46896 * 109.46933 * 60.00714 * 9 8 7 11 11 C 1.46895 * 111.00289 * 84.99861 * 10 9 8 12 12 C 1.53008 * 109.46895 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46873 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99781 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99905 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99844 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46642 * 90.01092 * 17 15 13 19 19 H 1.48498 * 109.46802 * 210.00560 * 17 15 13 20 20 H 1.48500 * 109.47462 * 330.00797 * 17 15 13 21 21 C 1.52998 * 109.47286 * 299.99910 * 9 8 7 22 22 C 1.52997 * 109.46630 * 60.00179 * 21 9 8 23 23 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 29 29 H 1.09003 * 109.47318 * 300.00255 * 7 6 4 30 30 H 1.09008 * 109.46908 * 59.99812 * 7 6 4 31 31 H 1.09003 * 109.47116 * 300.00464 * 8 7 6 32 32 H 1.09001 * 109.47677 * 179.97438 * 8 7 6 33 33 H 1.09003 * 109.46515 * 179.97438 * 9 8 7 34 34 H 1.00897 * 111.00076 * 321.03876 * 10 9 8 35 35 H 1.09002 * 109.47044 * 299.99617 * 11 10 9 36 36 H 1.09003 * 109.47339 * 60.00154 * 11 10 9 37 37 H 1.09002 * 109.47007 * 299.99695 * 12 11 10 38 38 H 1.08999 * 109.47280 * 59.99588 * 12 11 10 39 39 H 0.97003 * 119.99764 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46861 * 300.00418 * 21 9 8 41 41 H 1.08995 * 109.47244 * 179.97438 * 21 9 8 42 42 H 1.09005 * 109.47056 * 179.97438 * 22 21 9 43 43 H 1.09000 * 109.47303 * 60.00510 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 3.4495 3.6848 -1.2481 8 6 4.0336 5.0989 -1.2473 9 6 5.5616 5.0193 -1.2464 10 7 6.0153 4.3029 -2.4459 11 6 6.1262 5.2139 -3.5928 12 6 6.6008 4.4332 -4.8202 13 6 6.7152 5.3679 -5.9967 14 1 6.4732 6.4141 -5.8808 15 6 7.1278 4.8873 -7.2214 16 7 7.2272 5.7029 -8.2483 17 14 7.5456 3.0777 -7.4220 18 1 6.3258 2.3291 -7.8180 19 1 8.5841 2.9230 -8.4722 20 1 8.0591 2.5426 -6.1354 21 6 6.0327 4.2722 0.0029 22 6 5.4485 2.8582 0.0020 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.5843 3.4695 0.8911 29 1 3.7857 3.1529 -2.1381 30 1 2.3609 3.7418 -1.2485 31 1 3.6970 5.6305 -0.3573 32 1 3.6984 5.6311 -2.1375 33 1 5.9778 6.0268 -1.2463 34 1 5.4043 3.5282 -2.6571 35 1 5.1527 5.6589 -3.7989 36 1 6.8444 6.0012 -3.3635 37 1 7.5744 3.9886 -4.6138 38 1 5.8831 3.6456 -5.0497 39 1 7.5178 5.3649 -9.1098 40 1 5.6960 4.8039 0.8928 41 1 7.1212 4.2152 0.0033 42 1 5.7844 2.3256 0.8918 43 1 5.7852 2.3264 -0.8880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346315749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:57 Heat of formation + Delta-G solvation = -135.305472 kcal Electronic energy + Delta-G solvation = -21083.361755 eV Core-core repulsion = 17933.479311 eV Total energy + Delta-G solvation = -3149.882444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82631 -39.97533 -37.74279 -36.33636 -34.69214 -32.90119 -32.13820 -31.69671 -29.82181 -26.00015 -25.25503 -23.75788 -23.46200 -22.25428 -21.72326 -20.00430 -18.90216 -18.68389 -17.61428 -17.59708 -17.02632 -16.35385 -15.77669 -15.59255 -15.16048 -15.06360 -14.78114 -14.65376 -14.26728 -13.89132 -13.66157 -13.50387 -13.32710 -13.14008 -13.04220 -12.94063 -12.85889 -12.51896 -12.19375 -11.92393 -11.84268 -11.77448 -11.76341 -11.54431 -11.42486 -11.31552 -11.18927 -10.99658 -10.77906 -9.18857 -8.31306 -6.35087 1.13213 1.33967 1.36650 1.49780 1.67283 2.34955 3.04316 3.37358 3.51147 3.71366 3.77009 3.98213 4.05822 4.07385 4.19433 4.26060 4.33116 4.43668 4.45077 4.50309 4.56813 4.60001 4.78518 4.84211 4.90455 4.91553 4.97910 5.04167 5.10777 5.13040 5.17390 5.27134 5.30888 5.43022 5.45519 5.50487 5.51978 5.64819 6.22016 6.30167 6.57697 6.70240 6.74103 7.29882 8.85314 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.004108 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.930027 B = 6813.610595 C = 7531.879612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.540 6.540 6 C -0.069 4.069 7 C -0.108 4.108 8 C -0.141 4.141 9 C 0.077 3.923 10 N -0.692 5.692 11 C 0.088 3.912 12 C -0.006 4.006 13 C -0.531 4.531 14 H 0.035 0.965 15 C 0.007 3.993 16 N -0.949 5.949 17 Si 0.950 3.050 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.252 1.252 21 C -0.095 4.095 22 C -0.100 4.100 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.336 0.664 35 H 0.019 0.981 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.012 0.988 39 H 0.267 0.733 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 -8.390 22.550 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.430 6.430 6 C -0.088 4.088 7 C -0.146 4.146 8 C -0.179 4.179 9 C -0.033 4.033 10 N -0.324 5.324 11 C -0.041 4.041 12 C -0.043 4.043 13 C -0.570 4.570 14 H 0.053 0.947 15 C -0.190 4.190 16 N -0.590 5.590 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.175 1.175 21 C -0.133 4.133 22 C -0.138 4.138 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.164 -8.648 22.537 27.031 hybrid contribution -0.491 -0.601 -1.147 1.385 sum -12.655 -9.250 21.390 26.519 Atomic orbital electron populations 1.21816 0.90383 1.04308 1.03761 1.23270 0.97151 0.79511 1.02321 1.86517 1.24136 1.33399 1.83539 1.24319 0.80556 0.93266 0.70940 1.90658 1.61174 1.44424 1.46734 1.21190 0.96504 0.88261 1.02851 1.21480 1.01897 0.95877 0.95313 1.22131 0.96144 0.96088 1.03574 1.21741 0.93408 0.97658 0.90518 1.60691 1.55910 1.11575 1.04240 1.21626 0.98155 0.94713 0.89592 1.19445 0.96437 0.95487 0.92968 1.21415 1.44844 0.95905 0.94812 0.94687 1.25956 0.94794 1.02826 0.95417 1.70058 1.49356 1.37609 1.01993 0.85660 0.78637 0.79692 0.78664 1.19229 1.20767 1.17539 1.21485 1.00836 0.94172 0.96761 1.21360 0.91509 0.98237 1.02680 0.90871 0.91536 0.88375 0.92049 0.91141 0.84461 0.93310 0.89260 0.88339 0.92468 0.90440 0.84389 0.96292 0.92508 0.96251 0.97004 0.92432 0.88875 0.91514 0.91094 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 71.98 0.74 -0.83 16 2 C 0.05 0.86 6.19 71.98 0.45 1.31 16 3 O -0.36 -7.40 10.12 -51.35 -0.52 -7.92 16 4 C 0.46 10.83 7.26 71.23 0.52 11.34 16 5 O -0.54 -16.09 15.73 21.94 0.35 -15.75 16 6 C -0.07 -1.28 2.63 -11.54 -0.03 -1.31 16 7 C -0.11 -2.12 4.88 30.59 0.15 -1.97 16 8 C -0.14 -2.75 5.52 30.60 0.17 -2.58 16 9 C 0.08 1.82 2.86 44.92 0.13 1.94 16 10 N -0.69 -22.16 5.77 -491.56 -2.83 -24.99 16 11 C 0.09 3.51 5.42 86.31 0.47 3.98 16 12 C -0.01 -0.27 4.30 29.85 0.13 -0.14 16 13 C -0.53 -31.34 9.66 25.60 0.25 -31.09 16 14 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 15 C 0.01 0.42 5.47 84.66 0.46 0.88 16 16 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 17 Si 0.95 45.87 27.47 68.60 1.88 47.75 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 21 C -0.09 -1.84 5.64 30.59 0.17 -1.67 16 22 C -0.10 -2.13 4.26 30.59 0.13 -2.00 16 23 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 27 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.18 6.26 -2.39 -0.01 1.16 16 30 H 0.09 1.54 8.11 -2.38 -0.02 1.52 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.31 7.45 -2.39 -0.02 1.29 16 33 H 0.08 1.89 7.80 -2.39 -0.02 1.87 16 34 H 0.34 10.69 5.57 -89.70 -0.50 10.19 16 35 H 0.02 0.75 7.43 -2.39 -0.02 0.74 16 36 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 37 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 38 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 39 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.46 8.10 -2.38 -0.02 1.44 16 43 H 0.05 1.45 7.17 -2.39 -0.02 1.43 16 Total: -1.00 -70.89 338.44 3.32 -67.57 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.42 Total: 15.62 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 3.73 Total: -22.14 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -2.53 Total: -85.13 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.17 Total: -23.67 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.75 kcal Total: -70.89 3.32 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346315749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.740 kcal (2) G-P(sol) polarization free energy of solvation -70.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds