Wall clock time and date at job start Mon Mar 30 2020 00:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47308 * 2 1 4 4 C 1.52996 * 109.46849 * 119.99951 * 2 1 3 5 5 C 1.53004 * 109.47214 * 64.99916 * 4 2 1 6 6 O 1.42901 * 109.47177 * 179.97438 * 5 4 2 7 7 C 1.42903 * 113.99967 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46785 * 329.99798 * 7 6 5 9 9 C 1.52989 * 109.47066 * 90.00166 * 7 6 5 10 10 C 1.50703 * 109.46822 * 210.00219 * 7 6 5 11 11 O 1.21293 * 120.00336 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99520 * 179.97438 * 10 7 6 13 13 C 1.37102 * 119.99608 * 179.97438 * 12 10 7 14 14 H 1.08007 * 119.99598 * 222.94483 * 13 12 10 15 15 C 1.38949 * 120.00115 * 42.94674 * 13 12 10 16 16 N 1.31415 * 119.99761 * 18.92854 * 15 13 12 17 17 Si 1.86799 * 120.00107 * 198.92574 * 15 13 12 18 18 H 1.48501 * 109.47122 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47191 * 119.99835 * 17 15 13 20 20 H 1.48500 * 109.47192 * 239.99892 * 17 15 13 21 21 C 1.46498 * 120.00207 * 0.02562 * 12 10 7 22 22 C 1.53005 * 117.49567 * 187.62517 * 21 12 10 23 23 C 1.53004 * 117.49791 * 118.96471 * 21 12 10 24 24 H 1.08997 * 109.46710 * 60.00231 * 1 2 3 25 25 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47324 * 300.00531 * 1 2 3 27 27 H 1.08999 * 109.47324 * 239.99469 * 2 1 3 28 28 H 1.08991 * 109.47133 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47007 * 300.00349 * 3 2 1 30 30 H 1.09006 * 109.46738 * 59.99682 * 3 2 1 31 31 H 1.09000 * 109.47398 * 305.00199 * 4 2 1 32 32 H 1.09000 * 109.47494 * 184.99892 * 4 2 1 33 33 H 1.08993 * 109.47488 * 300.00100 * 5 4 2 34 34 H 1.09000 * 109.46706 * 59.99860 * 5 4 2 35 35 H 1.09008 * 109.47032 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47648 * 299.99784 * 9 7 6 37 37 H 1.09000 * 109.47619 * 60.00142 * 9 7 6 38 38 H 0.97006 * 119.99784 * 174.92398 * 16 15 13 39 39 H 1.08996 * 115.55196 * 333.29329 * 21 12 10 40 40 H 1.08999 * 117.49857 * 359.97438 * 22 21 12 41 41 H 1.09004 * 117.49420 * 145.01862 * 22 21 12 42 42 H 1.08999 * 117.49866 * 214.97431 * 23 21 12 43 43 H 1.08997 * 117.49723 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6351 -2.1955 1.1880 6 8 2.1119 -2.8692 2.3545 7 6 1.7860 -4.2600 2.3965 8 1 0.8486 -4.4296 1.8667 9 6 2.9022 -5.0657 1.7290 10 6 1.6387 -4.6983 3.8308 11 8 1.7968 -3.8983 4.7288 12 7 1.3303 -5.9790 4.1157 13 6 1.1968 -6.3779 5.4206 14 1 1.6221 -7.3163 5.7446 15 6 0.5145 -5.5748 6.3263 16 7 -0.3077 -4.6464 5.8916 17 14 0.7658 -5.8150 8.1617 18 1 1.7356 -6.9165 8.3885 19 1 1.2935 -4.5612 8.7573 20 1 -0.5313 -6.1578 8.7982 21 6 1.1388 -6.9450 3.0312 22 6 0.6173 -8.3337 3.4061 23 6 2.0782 -8.1520 2.9862 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 0.5489 -2.2724 1.1420 34 1 2.0698 -2.6550 0.3003 35 1 2.6538 -6.1266 1.7614 36 1 3.0088 -4.7487 0.6916 37 1 3.8396 -4.8961 2.2588 38 1 -0.8393 -4.1355 6.5220 39 1 0.8131 -6.5251 2.0796 40 1 0.4171 -8.5286 4.4597 41 1 -0.0513 -8.8275 2.7008 42 1 2.3700 -8.5263 2.0050 43 1 2.8388 -8.2269 3.7633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346501636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:36 Heat of formation + Delta-G solvation = -55.756925 kcal Electronic energy + Delta-G solvation = -21646.322426 eV Core-core repulsion = 18499.889466 eV Total energy + Delta-G solvation = -3146.432960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.04382 -37.64950 -36.25321 -35.57194 -32.72291 -31.58314 -30.33135 -28.77700 -27.21750 -25.17873 -23.55072 -22.53780 -21.72910 -20.97514 -20.02810 -19.31346 -16.62586 -16.13796 -16.06078 -15.63098 -14.77460 -14.59833 -14.29600 -14.00153 -13.83010 -13.44504 -13.31726 -12.84855 -12.57069 -12.37436 -12.21914 -12.02305 -11.65668 -11.45320 -11.35176 -11.12359 -10.88584 -10.83124 -10.78716 -10.73953 -10.63918 -10.42451 -10.34981 -10.10191 -9.90084 -9.70387 -9.15822 -8.64888 -7.82037 -6.97479 -6.07038 -3.81831 3.32335 3.42342 3.45040 3.89626 4.14807 4.35661 4.77628 4.83964 4.88693 4.90761 5.09904 5.27451 5.34979 5.47443 5.53741 5.56235 5.60209 5.63940 5.65835 5.66820 5.72642 5.77353 5.85162 5.88470 5.96957 5.99915 6.09047 6.15120 6.20019 6.21634 6.27016 6.37224 6.43806 6.46985 6.64607 6.74908 6.94757 7.63406 7.73746 8.31769 9.08979 9.23521 9.69443 10.35034 11.02164 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.005166 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.632965 B = 5418.547961 C = 6348.796364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.113 4.113 5 C 0.060 3.940 6 O -0.356 6.356 7 C 0.076 3.924 8 H 0.064 0.936 9 C -0.175 4.175 10 C 0.485 3.515 11 O -0.510 6.510 12 N -0.427 5.427 13 C -0.349 4.349 14 H 0.079 0.921 15 C 0.073 3.927 16 N -0.831 5.831 17 Si 0.912 3.088 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.286 1.286 21 C 0.075 3.925 22 C -0.176 4.176 23 C -0.208 4.208 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.263 0.737 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 2.610 -13.138 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.151 4.151 5 C -0.017 4.017 6 O -0.274 6.274 7 C 0.015 3.985 8 H 0.082 0.918 9 C -0.233 4.233 10 C 0.271 3.729 11 O -0.385 6.385 12 N -0.150 5.150 13 C -0.475 4.475 14 H 0.097 0.903 15 C -0.138 4.138 16 N -0.465 5.465 17 Si 0.739 3.261 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.212 1.212 21 C -0.032 4.032 22 C -0.214 4.214 23 C -0.247 4.247 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.080 3.375 -12.438 13.055 hybrid contribution -0.238 -0.299 0.517 0.643 sum 1.842 3.076 -11.921 12.449 Atomic orbital electron populations 1.21930 0.95218 1.02089 1.01676 1.21046 0.95990 0.96177 0.97989 1.21821 1.00954 0.95844 1.01681 1.21549 1.01656 0.93626 0.98220 1.22559 0.97873 0.92949 0.88346 1.88024 1.77572 1.20601 1.41220 1.21951 0.97087 0.82106 0.97395 0.91797 1.22432 0.99849 1.01412 0.99587 1.19521 0.81559 0.83538 0.88297 1.90544 1.49643 1.50935 1.47420 1.42690 1.62444 1.05935 1.03911 1.18874 1.37363 1.08069 0.83227 0.90340 1.25235 0.93610 0.95373 0.99601 1.69845 1.20556 1.20900 1.35182 0.86161 0.77742 0.78253 0.83952 1.19563 1.20635 1.21224 1.21725 1.02200 0.86090 0.93162 1.23131 0.95470 0.99696 1.03065 1.23354 0.94227 1.05323 1.01820 0.92943 0.92365 0.92409 0.91312 0.92678 0.92827 0.92536 0.90900 0.91295 0.93532 0.94173 0.89907 0.93077 0.91784 0.92646 0.88003 0.87409 0.89855 0.89787 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 2 C -0.09 -1.01 2.92 -90.62 -0.26 -1.28 16 3 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 4 C -0.11 -1.57 5.05 -26.73 -0.14 -1.70 16 5 C 0.06 0.95 5.50 37.16 0.20 1.16 16 6 O -0.36 -7.58 9.52 -55.14 -0.52 -8.11 16 7 C 0.08 1.60 2.35 -27.89 -0.07 1.53 16 8 H 0.06 1.24 7.21 -51.93 -0.37 0.87 16 9 C -0.18 -2.98 9.15 37.15 0.34 -2.64 16 10 C 0.48 12.92 6.45 -10.98 -0.07 12.85 16 11 O -0.51 -16.07 14.15 -14.36 -0.20 -16.27 16 12 N -0.43 -10.85 2.85 -107.72 -0.31 -11.16 16 13 C -0.35 -9.65 7.83 -14.93 -0.12 -9.76 16 14 H 0.08 2.09 7.40 -52.48 -0.39 1.70 16 15 C 0.07 2.08 4.36 -17.47 -0.08 2.00 16 16 N -0.83 -25.27 11.66 55.50 0.65 -24.62 16 17 Si 0.91 22.34 29.60 -169.99 -5.03 17.31 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.07 1.48 4.31 -67.93 -0.29 1.19 16 22 C -0.18 -3.14 9.81 -26.69 -0.26 -3.40 16 23 C -0.21 -3.50 9.39 -26.69 -0.25 -3.75 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.73 6.51 -51.93 -0.34 0.39 16 34 H 0.04 0.55 7.87 -51.93 -0.41 0.15 16 35 H 0.08 1.32 4.37 -51.92 -0.23 1.10 16 36 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.26 7.65 8.32 -40.82 -0.34 7.31 16 39 H 0.10 1.80 6.24 -51.93 -0.32 1.48 16 40 H 0.11 2.15 6.83 -51.93 -0.35 1.80 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -33.99 341.25 -7.96 -41.95 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.37 Total: 1.89 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.32 Total: -6.13 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.34 Total: -35.78 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.73 Total: -24.38 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.99 -7.96 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346501636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.807 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds