Wall clock time and date at job start Mon Mar 30 2020 00:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47308 * 2 1 4 4 C 1.52996 * 109.46849 * 119.99951 * 2 1 3 5 5 C 1.53004 * 109.47214 * 64.99916 * 4 2 1 6 6 O 1.42901 * 109.47177 * 179.97438 * 5 4 2 7 7 C 1.42903 * 113.99967 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46785 * 329.99798 * 7 6 5 9 9 C 1.52989 * 109.47066 * 90.00166 * 7 6 5 10 10 C 1.50703 * 109.46822 * 210.00219 * 7 6 5 11 11 O 1.21293 * 120.00336 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99520 * 179.97438 * 10 7 6 13 13 C 1.37102 * 119.99608 * 179.97438 * 12 10 7 14 14 H 1.08007 * 119.99598 * 222.94483 * 13 12 10 15 15 C 1.38949 * 120.00115 * 42.94674 * 13 12 10 16 16 N 1.31415 * 119.99761 * 18.92854 * 15 13 12 17 17 Si 1.86799 * 120.00107 * 198.92574 * 15 13 12 18 18 H 1.48501 * 109.47122 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47191 * 119.99835 * 17 15 13 20 20 H 1.48500 * 109.47192 * 239.99892 * 17 15 13 21 21 C 1.46498 * 120.00207 * 0.02562 * 12 10 7 22 22 C 1.53005 * 117.49567 * 187.62517 * 21 12 10 23 23 C 1.53004 * 117.49791 * 118.96471 * 21 12 10 24 24 H 1.08997 * 109.46710 * 60.00231 * 1 2 3 25 25 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47324 * 300.00531 * 1 2 3 27 27 H 1.08999 * 109.47324 * 239.99469 * 2 1 3 28 28 H 1.08991 * 109.47133 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47007 * 300.00349 * 3 2 1 30 30 H 1.09006 * 109.46738 * 59.99682 * 3 2 1 31 31 H 1.09000 * 109.47398 * 305.00199 * 4 2 1 32 32 H 1.09000 * 109.47494 * 184.99892 * 4 2 1 33 33 H 1.08993 * 109.47488 * 300.00100 * 5 4 2 34 34 H 1.09000 * 109.46706 * 59.99860 * 5 4 2 35 35 H 1.09008 * 109.47032 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47648 * 299.99784 * 9 7 6 37 37 H 1.09000 * 109.47619 * 60.00142 * 9 7 6 38 38 H 0.97006 * 119.99784 * 174.92398 * 16 15 13 39 39 H 1.08996 * 115.55196 * 333.29329 * 21 12 10 40 40 H 1.08999 * 117.49857 * 359.97438 * 22 21 12 41 41 H 1.09004 * 117.49420 * 145.01862 * 22 21 12 42 42 H 1.08999 * 117.49866 * 214.97431 * 23 21 12 43 43 H 1.08997 * 117.49723 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6351 -2.1955 1.1880 6 8 2.1119 -2.8692 2.3545 7 6 1.7860 -4.2600 2.3965 8 1 0.8486 -4.4296 1.8667 9 6 2.9022 -5.0657 1.7290 10 6 1.6387 -4.6983 3.8308 11 8 1.7968 -3.8983 4.7288 12 7 1.3303 -5.9790 4.1157 13 6 1.1968 -6.3779 5.4206 14 1 1.6221 -7.3163 5.7446 15 6 0.5145 -5.5748 6.3263 16 7 -0.3077 -4.6464 5.8916 17 14 0.7658 -5.8150 8.1617 18 1 1.7356 -6.9165 8.3885 19 1 1.2935 -4.5612 8.7573 20 1 -0.5313 -6.1578 8.7982 21 6 1.1388 -6.9450 3.0312 22 6 0.6173 -8.3337 3.4061 23 6 2.0782 -8.1520 2.9862 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 0.5489 -2.2724 1.1420 34 1 2.0698 -2.6550 0.3003 35 1 2.6538 -6.1266 1.7614 36 1 3.0088 -4.7487 0.6916 37 1 3.8396 -4.8961 2.2588 38 1 -0.8393 -4.1355 6.5220 39 1 0.8131 -6.5251 2.0796 40 1 0.4171 -8.5286 4.4597 41 1 -0.0513 -8.8275 2.7008 42 1 2.3700 -8.5263 2.0050 43 1 2.8388 -8.2269 3.7633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346501636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:36 Heat of formation + Delta-G solvation = -76.487874 kcal Electronic energy + Delta-G solvation = -21647.221387 eV Core-core repulsion = 18499.889466 eV Total energy + Delta-G solvation = -3147.331921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80062 -39.07165 -37.72473 -36.99694 -34.74711 -33.29146 -32.04206 -29.97751 -28.03486 -27.16200 -25.05667 -23.85418 -23.14357 -22.60686 -21.35216 -20.80103 -18.44291 -17.89005 -17.68059 -16.86953 -16.58358 -16.10632 -15.75577 -15.48876 -15.27883 -14.72349 -14.66904 -14.46871 -14.00494 -13.86819 -13.35905 -13.18281 -13.00605 -12.88122 -12.87535 -12.72170 -12.66794 -12.41200 -12.23822 -12.08853 -11.96156 -11.73816 -11.61058 -11.52049 -11.43598 -11.20249 -10.78384 -10.53819 -9.79113 -8.97093 -8.21510 -5.98740 1.33298 1.42252 1.49597 2.20547 2.33193 2.55872 3.11609 3.28002 3.37145 3.87281 3.90420 4.01161 4.03563 4.08405 4.16762 4.25461 4.27428 4.33678 4.43329 4.45603 4.55492 4.75738 4.78327 4.81483 4.89535 4.92408 4.95312 5.00778 5.05256 5.09896 5.10958 5.27121 5.29232 5.31396 5.43700 5.47503 5.49597 5.51582 6.15456 6.33731 7.01463 7.23706 7.67142 8.35757 8.87681 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.005166 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.632965 B = 5418.547961 C = 6348.796364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.054 3.946 6 O -0.393 6.393 7 C 0.085 3.915 8 H 0.078 0.922 9 C -0.163 4.163 10 C 0.463 3.537 11 O -0.579 6.579 12 N -0.439 5.439 13 C -0.355 4.355 14 H 0.082 0.918 15 C 0.018 3.982 16 N -0.873 5.873 17 Si 0.969 3.031 18 H -0.255 1.255 19 H -0.298 1.298 20 H -0.270 1.270 21 C 0.041 3.959 22 C -0.173 4.173 23 C -0.177 4.177 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.258 0.742 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 1.184 -15.934 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.148 4.148 5 C -0.022 4.022 6 O -0.313 6.313 7 C 0.024 3.976 8 H 0.096 0.904 9 C -0.220 4.220 10 C 0.251 3.749 11 O -0.459 6.459 12 N -0.160 5.160 13 C -0.483 4.483 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.508 5.508 17 Si 0.794 3.206 18 H -0.178 1.178 19 H -0.226 1.226 20 H -0.196 1.196 21 C -0.064 4.064 22 C -0.211 4.211 23 C -0.216 4.216 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.146 0.854 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.593 1.878 -15.270 15.602 hybrid contribution -0.375 0.100 1.329 1.385 sum 2.218 1.977 -13.940 14.254 Atomic orbital electron populations 1.21944 0.95169 1.01819 1.02090 1.21031 0.95973 0.96737 0.96762 1.21818 1.01250 0.94960 1.02176 1.21581 1.01532 0.92769 0.98944 1.22841 0.97994 0.93669 0.87666 1.87990 1.78104 1.21064 1.44102 1.21832 0.99340 0.82760 0.93711 0.90390 1.22354 0.97221 1.01471 1.00932 1.20651 0.80351 0.83461 0.90434 1.90484 1.52643 1.52853 1.49930 1.42906 1.61573 1.06886 1.04666 1.19165 1.36268 1.07762 0.85066 0.89995 1.26087 0.93580 0.95311 1.03796 1.69961 1.22163 1.22543 1.36141 0.85267 0.78509 0.77630 0.79148 1.17806 1.22552 1.19577 1.22081 1.05684 0.86033 0.92558 1.23197 0.97285 0.98083 1.02489 1.23379 0.92973 1.01752 1.03479 0.90879 0.92989 0.93668 0.89541 0.92261 0.91003 0.93392 0.93503 0.91346 0.93726 0.91115 0.88599 0.89286 0.93463 0.93280 0.85419 0.90191 0.86256 0.85227 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.95 71.98 0.64 -2.41 16 2 C -0.09 -1.72 2.92 -10.79 -0.03 -1.76 16 3 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 4 C -0.11 -3.05 5.05 30.59 0.15 -2.89 16 5 C 0.05 1.68 5.50 71.98 0.40 2.08 16 6 O -0.39 -16.91 9.52 -129.94 -1.24 -18.15 16 7 C 0.08 3.50 2.35 29.85 0.07 3.57 16 8 H 0.08 2.93 7.21 -2.39 -0.02 2.92 16 9 C -0.16 -5.10 9.15 71.98 0.66 -4.45 16 10 C 0.46 25.27 6.45 87.66 0.57 25.83 16 11 O -0.58 -38.29 14.15 15.97 0.23 -38.07 16 12 N -0.44 -22.46 2.85 -613.11 -1.75 -24.21 16 13 C -0.36 -20.04 7.83 84.04 0.66 -19.38 16 14 H 0.08 4.42 7.40 -2.91 -0.02 4.40 16 15 C 0.02 1.08 4.36 84.93 0.37 1.45 16 16 N -0.87 -55.35 11.66 21.66 0.25 -55.09 16 17 Si 0.97 47.23 29.60 68.60 2.03 49.26 16 18 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 C 0.04 1.55 4.31 44.99 0.19 1.74 16 22 C -0.17 -5.73 9.81 30.62 0.30 -5.43 16 23 C -0.18 -5.33 9.39 30.62 0.29 -5.05 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.09 6.57 -2.39 -0.02 1.07 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.38 6.51 -2.39 -0.02 1.36 16 34 H 0.07 1.74 7.87 -2.39 -0.02 1.72 16 35 H 0.10 2.72 4.37 -2.38 -0.01 2.71 16 36 H 0.09 2.12 7.87 -2.39 -0.02 2.10 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.26 15.76 8.32 -92.70 -0.77 14.99 16 39 H 0.13 4.10 6.24 -2.39 -0.01 4.08 16 40 H 0.08 3.12 6.83 -2.39 -0.02 3.11 16 41 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -79.14 341.25 5.42 -73.72 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.97 Total: 21.08 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.93 Total: -8.53 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.50 Total: -79.30 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -1.01 Total: -56.22 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -79.14 5.42 -73.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346501636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.772 kcal (2) G-P(sol) polarization free energy of solvation -79.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds