Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47084 * 2 1 4 4 C 1.42903 * 114.00267 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47176 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47598 * 90.00303 * 10 9 7 12 12 H 1.08005 * 119.99628 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00538 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99774 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00058 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46761 * 60.00209 * 15 13 11 17 17 H 1.48496 * 109.46664 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47077 * 300.00223 * 15 13 11 19 19 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.46986 * 90.00387 * 19 9 7 21 21 C 1.52997 * 117.49514 * 243.61460 * 20 19 9 22 22 C 1.52997 * 60.00268 * 252.51458 * 21 20 19 23 23 H 1.08995 * 109.47456 * 300.00465 * 1 2 3 24 24 H 1.09008 * 109.46764 * 60.00247 * 1 2 3 25 25 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47287 * 240.00431 * 2 1 3 27 27 H 1.08999 * 109.47329 * 119.99580 * 2 1 3 28 28 H 1.08992 * 109.46851 * 59.99708 * 4 3 2 29 29 H 1.08996 * 109.46618 * 299.99998 * 4 3 2 30 30 H 1.09001 * 109.47372 * 60.00040 * 5 4 3 31 31 H 1.09004 * 109.47108 * 299.99784 * 5 4 3 32 32 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 33 33 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 34 34 H 1.09008 * 109.47096 * 209.99661 * 10 9 7 35 35 H 1.09003 * 109.47776 * 329.99537 * 10 9 7 36 36 H 0.97002 * 119.99965 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.46971 * 209.99938 * 19 9 7 38 38 H 1.08993 * 109.47768 * 330.00002 * 19 9 7 39 39 H 1.09000 * 115.55217 * 29.32861 * 20 19 9 40 40 H 1.09003 * 117.50408 * 0.02562 * 21 20 19 41 41 H 1.09009 * 117.49806 * 145.01909 * 21 20 19 42 42 H 1.09001 * 117.49351 * 252.51715 * 22 21 20 43 43 H 1.08988 * 117.50123 * 107.49613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 6 5.3505 3.0593 0.0024 7 6 5.7391 4.5154 0.0024 8 8 4.8806 5.3720 0.0019 9 7 7.0406 4.8655 0.0029 10 6 7.4182 6.2809 0.0034 11 6 7.5474 6.7660 1.4243 12 1 7.3659 6.0877 2.2450 13 6 7.8973 8.0755 1.6768 14 7 8.1178 8.9015 0.6775 15 14 8.0566 8.6768 3.4382 16 1 9.0996 7.8854 4.1388 17 1 8.4395 10.1116 3.4386 18 1 6.7569 8.5116 4.1371 19 6 8.0775 3.8306 0.0029 20 6 8.4389 3.4708 -1.4396 21 6 8.1494 2.0425 -1.9051 22 6 9.5915 2.4879 -1.6549 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8340 0.9765 -0.8891 29 1 3.8332 0.9768 0.8908 30 1 3.4222 3.4217 0.8911 31 1 3.4229 3.4222 -0.8889 32 1 5.7540 2.5759 -0.8873 33 1 5.7527 2.5756 0.8926 34 1 8.3720 6.4027 -0.5101 35 1 6.6522 6.8617 -0.5106 36 1 8.3636 9.8229 0.8550 37 1 8.9632 4.2038 0.5171 38 1 7.7059 2.9439 0.5163 39 1 8.3183 4.2723 -2.1684 40 1 7.7010 1.3591 -1.1839 41 1 7.8378 1.9039 -2.9405 42 1 10.2287 2.6425 -2.5256 43 1 10.0923 2.0976 -0.7690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349402458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -75.839279 kcal Electronic energy + Delta-G solvation = -20772.742343 eV Core-core repulsion = 17625.438547 eV Total energy + Delta-G solvation = -3147.303796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28416 -38.11284 -37.16663 -34.49674 -33.59097 -32.47951 -31.10139 -28.17115 -26.82402 -25.59952 -22.97676 -22.89865 -22.31016 -21.21669 -20.63666 -18.34157 -16.91389 -16.54547 -16.37018 -16.29798 -15.29999 -15.18813 -14.84783 -14.31583 -14.23193 -14.11448 -13.55235 -12.85635 -12.72241 -12.64612 -12.26319 -12.03806 -11.80063 -11.57783 -11.52267 -11.44791 -11.32991 -11.14849 -10.94410 -10.83018 -10.68597 -10.55655 -10.32413 -10.07277 -9.81311 -9.66940 -9.60408 -8.83350 -8.40564 -7.64052 -6.01624 -4.06268 3.33520 3.38092 3.39989 3.48996 3.49405 3.84360 4.09831 4.47416 4.83493 4.84166 4.93682 5.01615 5.03036 5.07356 5.15558 5.21228 5.27462 5.32321 5.37520 5.47272 5.54655 5.58818 5.62192 5.66980 5.70760 5.81419 5.88952 5.91408 5.98676 6.10030 6.16814 6.30403 6.46018 6.48353 7.10079 7.16197 7.48141 7.58514 7.95011 8.26745 8.46575 8.93283 9.14940 9.58781 11.06468 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.004457 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.267331 B = 6280.870275 C = 7720.430869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.065 3.935 5 C -0.103 4.103 6 C -0.138 4.138 7 C 0.507 3.493 8 O -0.540 6.540 9 N -0.596 5.596 10 C 0.246 3.754 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.143 3.857 20 C -0.164 4.164 21 C -0.186 4.186 22 C -0.177 4.177 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -19.666 -3.598 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.012 4.012 5 C -0.140 4.140 6 C -0.179 4.179 7 C 0.294 3.706 8 O -0.417 6.417 9 N -0.327 5.327 10 C 0.127 3.873 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.018 3.982 20 C -0.184 4.184 21 C -0.223 4.223 22 C -0.214 4.214 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.484 -18.820 -3.634 19.685 hybrid contribution 0.502 0.082 0.911 1.044 sum -3.982 -18.738 -2.723 19.349 Atomic orbital electron populations 1.21745 0.93900 1.02002 1.03265 1.22432 0.95560 0.84183 0.99833 1.87918 1.21502 1.25979 1.95382 1.22538 0.80883 0.97990 0.99784 1.21214 0.94133 0.93793 1.04907 1.21622 0.96609 0.96015 1.03608 1.20251 0.82928 0.90224 0.77192 1.90677 1.48997 1.52232 1.49813 1.48184 1.04278 1.08950 1.71336 1.19260 0.96239 0.74400 0.97376 1.21405 1.46938 0.95845 0.92335 0.92557 1.24931 0.95275 0.96502 0.97376 1.69923 1.47248 1.05472 1.30774 0.86567 0.78536 0.77620 0.84750 1.20276 1.21194 1.20177 1.21000 0.92890 0.91320 0.92959 1.22951 1.02710 0.93062 0.99640 1.23046 0.99204 0.98027 1.02031 1.22893 0.91190 1.04146 1.03188 0.91802 0.91828 0.91302 0.93603 0.93589 0.93487 0.93494 0.90372 0.90456 0.89277 0.89661 0.95045 0.93931 0.92693 0.89562 0.91470 0.87399 0.88937 0.89203 0.89024 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.39 -5.11 10.34 -35.23 -0.36 -5.47 16 4 C 0.06 0.76 5.94 37.16 0.22 0.98 16 5 C -0.10 -1.52 4.87 -26.73 -0.13 -1.65 16 6 C -0.14 -2.03 4.25 -27.88 -0.12 -2.15 16 7 C 0.51 10.59 7.67 -10.98 -0.08 10.51 16 8 O -0.54 -13.84 15.56 5.56 0.09 -13.75 16 9 N -0.60 -12.55 2.46 -175.06 -0.43 -12.98 16 10 C 0.25 6.47 5.16 -5.20 -0.03 6.45 16 11 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 12 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 15 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.14 2.28 5.49 -4.04 -0.02 2.26 16 20 C -0.16 -2.25 5.95 -90.62 -0.54 -2.79 16 21 C -0.19 -1.99 9.18 -26.73 -0.25 -2.24 16 22 C -0.18 -1.94 10.25 -26.73 -0.27 -2.21 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.11 6.84 -51.93 -0.36 0.76 16 33 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 34 H 0.03 0.84 8.07 -51.92 -0.42 0.42 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 37 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 38 H 0.07 0.90 6.17 -51.93 -0.32 0.57 16 39 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.09 0.87 7.87 -51.93 -0.41 0.46 16 41 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 0.95 8.14 -51.94 -0.42 0.52 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -33.34 356.79 -8.36 -41.70 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.73 Total: -1.17 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.01 Total: -4.61 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.31 Total: -39.09 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.28 Total: -19.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.34 -8.36 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349402458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.142 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds