Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47084 * 2 1 4 4 C 1.42903 * 114.00267 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47176 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47598 * 90.00303 * 10 9 7 12 12 H 1.08005 * 119.99628 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00538 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99774 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00058 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46761 * 60.00209 * 15 13 11 17 17 H 1.48496 * 109.46664 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47077 * 300.00223 * 15 13 11 19 19 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.46986 * 90.00387 * 19 9 7 21 21 C 1.52997 * 117.49514 * 243.61460 * 20 19 9 22 22 C 1.52997 * 60.00268 * 252.51458 * 21 20 19 23 23 H 1.08995 * 109.47456 * 300.00465 * 1 2 3 24 24 H 1.09008 * 109.46764 * 60.00247 * 1 2 3 25 25 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47287 * 240.00431 * 2 1 3 27 27 H 1.08999 * 109.47329 * 119.99580 * 2 1 3 28 28 H 1.08992 * 109.46851 * 59.99708 * 4 3 2 29 29 H 1.08996 * 109.46618 * 299.99998 * 4 3 2 30 30 H 1.09001 * 109.47372 * 60.00040 * 5 4 3 31 31 H 1.09004 * 109.47108 * 299.99784 * 5 4 3 32 32 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 33 33 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 34 34 H 1.09008 * 109.47096 * 209.99661 * 10 9 7 35 35 H 1.09003 * 109.47776 * 329.99537 * 10 9 7 36 36 H 0.97002 * 119.99965 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.46971 * 209.99938 * 19 9 7 38 38 H 1.08993 * 109.47768 * 330.00002 * 19 9 7 39 39 H 1.09000 * 115.55217 * 29.32861 * 20 19 9 40 40 H 1.09003 * 117.50408 * 0.02562 * 21 20 19 41 41 H 1.09009 * 117.49806 * 145.01909 * 21 20 19 42 42 H 1.09001 * 117.49351 * 252.51715 * 22 21 20 43 43 H 1.08988 * 117.50123 * 107.49613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 6 5.3505 3.0593 0.0024 7 6 5.7391 4.5154 0.0024 8 8 4.8806 5.3720 0.0019 9 7 7.0406 4.8655 0.0029 10 6 7.4182 6.2809 0.0034 11 6 7.5474 6.7660 1.4243 12 1 7.3659 6.0877 2.2450 13 6 7.8973 8.0755 1.6768 14 7 8.1178 8.9015 0.6775 15 14 8.0566 8.6768 3.4382 16 1 9.0996 7.8854 4.1388 17 1 8.4395 10.1116 3.4386 18 1 6.7569 8.5116 4.1371 19 6 8.0775 3.8306 0.0029 20 6 8.4389 3.4708 -1.4396 21 6 8.1494 2.0425 -1.9051 22 6 9.5915 2.4879 -1.6549 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8340 0.9765 -0.8891 29 1 3.8332 0.9768 0.8908 30 1 3.4222 3.4217 0.8911 31 1 3.4229 3.4222 -0.8889 32 1 5.7540 2.5759 -0.8873 33 1 5.7527 2.5756 0.8926 34 1 8.3720 6.4027 -0.5101 35 1 6.6522 6.8617 -0.5106 36 1 8.3636 9.8229 0.8550 37 1 8.9632 4.2038 0.5171 38 1 7.7059 2.9439 0.5163 39 1 8.3183 4.2723 -2.1684 40 1 7.7010 1.3591 -1.1839 41 1 7.8378 1.9039 -2.9405 42 1 10.2287 2.6425 -2.5256 43 1 10.0923 2.0976 -0.7690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349402458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -96.710931 kcal Electronic energy + Delta-G solvation = -20773.647406 eV Core-core repulsion = 17625.438547 eV Total energy + Delta-G solvation = -3148.208859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86260 -39.01279 -38.34380 -36.19002 -34.84374 -34.49369 -31.93303 -30.01032 -28.07795 -27.16998 -24.76680 -23.63923 -23.16481 -22.48337 -21.77905 -19.87835 -18.61777 -18.16366 -17.46899 -17.38274 -17.03799 -16.48282 -16.06427 -15.93258 -15.35206 -15.15465 -14.69957 -14.36715 -14.23971 -13.70217 -13.62675 -13.52699 -13.24570 -12.90102 -12.76234 -12.56511 -12.44068 -12.43508 -12.40320 -12.23377 -12.20239 -11.84118 -11.77351 -11.71087 -11.22408 -10.88242 -10.64889 -10.50414 -10.48751 -9.43332 -8.22806 -6.38116 1.35531 1.40561 1.47668 1.85860 2.24217 2.41440 2.81459 3.01954 3.06508 3.66750 3.92615 4.00942 4.08195 4.11673 4.17843 4.21259 4.32547 4.36550 4.46820 4.52342 4.54492 4.57115 4.66843 4.79555 4.86147 4.88514 4.89927 5.03404 5.05025 5.10735 5.15401 5.23107 5.26469 5.32262 5.35810 5.36751 5.56609 5.85717 6.06075 6.36007 6.69543 6.81535 7.28030 7.50855 8.84278 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.004457 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.267331 B = 6280.870275 C = 7720.430869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.422 6.422 4 C 0.071 3.929 5 C -0.100 4.100 6 C -0.118 4.118 7 C 0.494 3.506 8 O -0.602 6.602 9 N -0.600 5.600 10 C 0.263 3.737 11 C -0.544 4.544 12 H 0.055 0.945 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.969 3.031 16 H -0.258 1.258 17 H -0.278 1.278 18 H -0.278 1.278 19 C 0.142 3.858 20 C -0.196 4.196 21 C -0.163 4.163 22 C -0.163 4.163 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.019 0.981 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 -23.264 -2.624 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.342 6.342 4 C -0.005 4.005 5 C -0.138 4.138 6 C -0.158 4.158 7 C 0.284 3.716 8 O -0.484 6.484 9 N -0.330 5.330 10 C 0.142 3.858 11 C -0.583 4.583 12 H 0.073 0.927 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.793 3.207 16 H -0.182 1.182 17 H -0.203 1.203 18 H -0.204 1.204 19 C 0.020 3.980 20 C -0.215 4.215 21 C -0.199 4.199 22 C -0.201 4.201 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.037 0.963 35 H 0.010 0.990 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.675 -22.479 -2.669 22.934 hybrid contribution 0.250 1.201 0.538 1.340 sum -3.425 -21.278 -2.131 21.657 Atomic orbital electron populations 1.21791 0.93440 1.03364 1.02382 1.22676 0.96069 0.82719 1.01213 1.87881 1.22224 1.28420 1.95681 1.22477 0.80746 0.95344 1.01972 1.21134 0.94091 0.96177 1.02389 1.21567 0.96604 0.91082 1.06526 1.21449 0.81964 0.92706 0.75515 1.90642 1.50610 1.54639 1.52501 1.48187 1.05973 1.07881 1.70979 1.18662 0.93759 0.77537 0.95868 1.21703 1.47089 0.96419 0.93054 0.92703 1.25898 0.94650 0.96626 1.02118 1.70055 1.47825 1.05877 1.33209 0.85450 0.78731 0.77517 0.79020 1.18212 1.20342 1.20353 1.21250 0.90999 0.90809 0.94978 1.22651 1.07048 0.94348 0.97481 1.23209 0.98629 0.94965 1.03128 1.23008 0.91373 1.01683 1.03995 0.92764 0.92664 0.88806 0.92049 0.92215 0.91012 0.91331 0.93244 0.92912 0.86049 0.86382 0.96293 0.98954 0.92412 0.91066 0.87681 0.90526 0.86366 0.88304 0.88473 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 2 C 0.05 0.81 6.66 71.98 0.48 1.29 16 3 O -0.42 -10.42 10.34 -148.98 -1.54 -11.97 16 4 C 0.07 1.47 5.94 71.98 0.43 1.89 16 5 C -0.10 -2.89 4.87 30.59 0.15 -2.74 16 6 C -0.12 -3.22 4.25 29.85 0.13 -3.09 16 7 C 0.49 21.09 7.67 87.66 0.67 21.76 16 8 O -0.60 -32.80 15.56 -3.02 -0.05 -32.84 16 9 N -0.60 -25.97 2.46 -826.16 -2.03 -27.99 16 10 C 0.26 14.70 5.16 85.63 0.44 15.14 16 11 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 12 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 13 C 0.01 0.35 5.46 84.66 0.46 0.81 16 14 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 15 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 19 C 0.14 4.38 5.49 86.38 0.47 4.86 16 20 C -0.20 -5.13 5.95 -10.79 -0.06 -5.19 16 21 C -0.16 -2.81 9.18 30.59 0.28 -2.53 16 22 C -0.16 -3.08 10.25 30.59 0.31 -2.77 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.05 1.76 8.10 -2.38 -0.02 1.74 16 32 H 0.12 2.55 6.84 -2.39 -0.02 2.54 16 33 H 0.12 2.51 7.40 -2.39 -0.02 2.49 16 34 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 35 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 38 H 0.11 2.40 6.17 -2.39 -0.01 2.39 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 40 H 0.12 1.48 7.87 -2.39 -0.02 1.47 16 41 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -78.82 356.79 4.39 -74.43 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.95 Total: 12.05 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 4.74 Total: -4.01 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.74 Total: -85.42 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.59 Total: -44.81 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -78.82 4.39 -74.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349402458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.285 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds