Wall clock time and date at job start Mon Mar 30 2020 01:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47070 * 2 1 4 4 C 1.34234 * 116.99938 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00068 * 179.97438 * 4 3 2 7 7 H 1.09007 * 109.49924 * 299.99981 * 6 4 3 8 8 C 1.53116 * 109.50258 * 60.07638 * 6 4 3 9 9 C 1.53127 * 109.15889 * 177.55695 * 8 6 4 10 10 C 1.53038 * 109.30786 * 302.41043 * 9 8 6 11 11 N 1.46840 * 109.52746 * 59.15817 * 10 9 8 12 12 C 1.46895 * 110.99997 * 174.16095 * 11 10 9 13 13 H 1.09009 * 109.47029 * 179.20815 * 12 11 10 14 14 C 1.52997 * 109.47440 * 59.21060 * 12 11 10 15 15 C 1.53000 * 109.47149 * 299.20584 * 12 11 10 16 16 C 1.50699 * 109.47326 * 294.99886 * 15 12 11 17 17 H 1.08004 * 119.99800 * 0.02562 * 16 15 12 18 18 C 1.37870 * 120.00021 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99991 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47156 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47456 * 120.00121 * 20 18 16 23 23 H 1.48507 * 109.47046 * 240.00089 * 20 18 16 24 24 C 1.46850 * 111.19352 * 298.25822 * 11 10 9 25 25 H 1.08999 * 109.47659 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47592 * 300.00297 * 1 2 3 27 27 H 1.08999 * 109.47084 * 60.00195 * 1 2 3 28 28 H 1.08996 * 109.47090 * 239.99632 * 2 1 3 29 29 H 1.08999 * 109.47084 * 119.99805 * 2 1 3 30 30 H 1.08997 * 109.52489 * 297.50148 * 8 6 4 31 31 H 1.09002 * 109.52486 * 57.69345 * 8 6 4 32 32 H 1.08997 * 109.50768 * 182.44531 * 9 8 6 33 33 H 1.09004 * 109.50064 * 62.36388 * 9 8 6 34 34 H 1.09000 * 109.46303 * 299.13753 * 10 9 8 35 35 H 1.09005 * 109.46226 * 179.17456 * 10 9 8 36 36 H 1.09001 * 109.47121 * 59.99580 * 14 12 11 37 37 H 1.08998 * 109.47876 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.47188 * 300.00130 * 14 12 11 39 39 H 1.08996 * 109.47088 * 55.00217 * 15 12 11 40 40 H 1.09001 * 109.46792 * 175.00261 * 15 12 11 41 41 H 0.96991 * 120.00628 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.46475 * 301.72286 * 24 11 10 43 43 H 1.09009 * 109.45058 * 181.75604 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5855 3.4695 -0.8904 8 6 3.4502 3.6857 1.2502 9 6 4.0884 5.0774 1.2729 10 6 5.6119 4.9361 1.2387 11 7 6.0107 4.2148 0.0234 12 6 7.4730 4.1813 -0.1129 13 1 7.7414 3.6292 -1.0137 14 6 8.0834 3.4917 1.1088 15 6 8.0088 5.6109 -0.2124 16 6 7.5048 6.2492 -1.4811 17 1 6.8657 5.6911 -2.1494 18 6 7.8585 7.5459 -1.7881 19 7 8.6363 8.2257 -0.9741 20 14 7.2331 8.3373 -3.3603 21 1 6.3825 7.3688 -4.0976 22 1 6.4339 9.5428 -3.0238 23 1 8.3864 8.7293 -4.2099 24 6 5.4490 2.8582 0.0027 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3647 3.7824 1.2300 31 1 3.7511 3.1331 2.1403 32 1 3.7917 5.5992 2.1827 33 1 3.7560 5.6444 0.4033 34 1 5.9450 4.3816 2.1159 35 1 6.0686 5.9259 1.2399 36 1 7.7017 2.4732 1.1797 37 1 9.1684 3.4663 1.0075 38 1 7.8150 4.0437 2.0096 39 1 7.6655 6.1882 0.6460 40 1 9.0986 5.5904 -0.2241 41 1 8.8849 9.1381 -1.1898 42 1 5.7828 2.3133 0.8858 43 1 5.7874 2.3388 -0.8939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351610827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:45 Heat of formation + Delta-G solvation = -101.317708 kcal Electronic energy + Delta-G solvation = -21603.701449 eV Core-core repulsion = 18455.292825 eV Total energy + Delta-G solvation = -3148.408624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70666 -38.78521 -36.66390 -34.89066 -32.50182 -31.93251 -30.78510 -29.67944 -27.28785 -24.80306 -24.14250 -23.04747 -22.50928 -21.30718 -19.79819 -18.69437 -17.53738 -16.62938 -16.44067 -16.12045 -15.26625 -14.65753 -14.45306 -14.14304 -14.00795 -13.72368 -13.56463 -13.14154 -12.97648 -12.61861 -12.24767 -12.12534 -11.96986 -11.84319 -11.74795 -11.44631 -11.21692 -11.09623 -10.73998 -10.69150 -10.56748 -10.50391 -10.33322 -10.22281 -9.99699 -9.81002 -9.13574 -8.94703 -8.25041 -7.48587 -5.88168 -3.85957 2.21771 2.58605 3.38795 3.46508 3.52092 4.44674 4.57348 4.66283 4.68845 4.76201 4.87346 5.01858 5.03005 5.22898 5.46277 5.48872 5.51043 5.51954 5.58274 5.71562 5.77362 5.81876 5.87968 5.95228 6.02504 6.07143 6.13282 6.14740 6.28238 6.38738 6.48435 6.60472 6.67254 6.78848 6.99223 7.54664 7.66827 7.76113 7.92457 8.02120 8.13545 8.58789 9.20642 9.76018 11.23795 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.004487 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.748523 B = 6238.484312 C = 6681.382955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.469 3.531 5 O -0.510 6.510 6 C -0.076 4.076 7 H 0.118 0.882 8 C -0.107 4.107 9 C -0.114 4.114 10 C 0.050 3.950 11 N -0.510 5.510 12 C 0.089 3.911 13 H 0.071 0.929 14 C -0.185 4.185 15 C 0.028 3.972 16 C -0.489 4.489 17 H 0.062 0.938 18 C 0.050 3.950 19 N -0.904 5.904 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.288 1.288 24 C 0.070 3.930 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.024 0.976 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.021 0.979 40 H 0.019 0.981 41 H 0.256 0.744 42 H 0.036 0.964 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 -12.863 5.055 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.312 3.688 5 O -0.398 6.398 6 C -0.096 4.096 7 H 0.136 0.864 8 C -0.145 4.145 9 C -0.152 4.152 10 C -0.078 4.078 11 N -0.233 5.233 12 C -0.019 4.019 13 H 0.089 0.911 14 C -0.244 4.244 15 C -0.009 4.009 16 C -0.528 4.528 17 H 0.080 0.920 18 C -0.149 4.149 19 N -0.545 5.545 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.215 1.215 24 C -0.058 4.058 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.837 -12.760 4.660 19.391 hybrid contribution 0.063 -0.168 -0.176 0.251 sum -13.775 -12.929 4.484 19.416 Atomic orbital electron populations 1.21797 0.92708 1.02812 1.03576 1.22992 0.95312 0.80645 1.02471 1.86529 1.24879 1.31963 1.84083 1.23966 0.80267 0.92894 0.71654 1.90647 1.60403 1.43337 1.45379 1.21143 0.97051 0.88672 1.02709 0.86391 1.21554 1.00712 0.96879 0.95348 1.21594 0.95750 0.95342 1.02525 1.22179 0.94660 1.00602 0.90355 1.61990 1.11205 1.12760 1.37348 1.21909 0.84324 1.00318 0.95351 0.91088 1.22531 1.01551 0.99648 1.00694 1.19252 0.95657 0.88249 0.97740 1.21222 1.28546 0.97488 1.05543 0.92012 1.25004 0.95589 0.97569 0.96729 1.69970 1.36970 1.10627 1.36933 0.86586 0.78491 0.79265 0.83930 1.19768 1.21344 1.21451 1.21857 0.90528 0.91835 1.01600 0.90399 0.91488 0.91417 0.91326 0.91423 0.90908 0.92205 0.91502 0.90428 0.95802 0.88626 0.93982 0.92485 0.92930 0.96071 0.96265 0.93389 0.94588 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 37.16 0.38 -0.66 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.43 10.15 -39.27 -0.40 -4.83 16 4 C 0.47 6.68 7.26 36.01 0.26 6.95 16 5 O -0.51 -8.48 15.73 -18.75 -0.29 -8.78 16 6 C -0.08 -1.08 2.79 -91.70 -0.26 -1.33 16 7 H 0.12 1.65 8.14 -51.92 -0.42 1.23 16 8 C -0.11 -1.35 5.22 -26.61 -0.14 -1.49 16 9 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16 10 C 0.05 0.86 4.64 -3.84 -0.02 0.84 16 11 N -0.51 -9.52 4.36 -226.69 -0.99 -10.51 16 12 C 0.09 1.81 2.30 -67.72 -0.16 1.65 16 13 H 0.07 1.49 8.08 -51.92 -0.42 1.07 16 14 C -0.19 -3.26 8.50 37.16 0.32 -2.95 16 15 C 0.03 0.70 4.27 -27.88 -0.12 0.58 16 16 C -0.49 -13.50 8.84 -34.44 -0.30 -13.81 16 17 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 18 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 20 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.07 1.15 3.60 -3.84 -0.01 1.14 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.39 6.62 -51.93 -0.34 0.05 16 35 H 0.10 1.91 5.93 -51.93 -0.31 1.61 16 36 H 0.04 0.68 6.65 -51.93 -0.35 0.34 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.91 6.52 -51.93 -0.34 0.57 16 39 H 0.02 0.55 6.05 -51.93 -0.31 0.24 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.04 0.60 6.67 -51.93 -0.35 0.26 16 43 H 0.08 1.31 8.05 -51.92 -0.42 0.89 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -30.73 338.14 -8.39 -39.12 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.45 Total: -2.01 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.08 Total: -8.71 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.25 Total: -36.73 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.69 Total: -13.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.73 -8.39 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351610827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.194 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds