Wall clock time and date at job start Mon Mar 30 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47070 * 2 1 4 4 C 1.34234 * 116.99938 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00068 * 179.97438 * 4 3 2 7 7 H 1.09007 * 109.49924 * 299.99981 * 6 4 3 8 8 C 1.53116 * 109.50258 * 60.07638 * 6 4 3 9 9 C 1.53127 * 109.15889 * 177.55695 * 8 6 4 10 10 C 1.53038 * 109.30786 * 302.41043 * 9 8 6 11 11 N 1.46840 * 109.52746 * 59.15817 * 10 9 8 12 12 C 1.46895 * 110.99997 * 174.16095 * 11 10 9 13 13 H 1.09009 * 109.47029 * 179.20815 * 12 11 10 14 14 C 1.52997 * 109.47440 * 59.21060 * 12 11 10 15 15 C 1.53000 * 109.47149 * 299.20584 * 12 11 10 16 16 C 1.50699 * 109.47326 * 294.99886 * 15 12 11 17 17 H 1.08004 * 119.99800 * 0.02562 * 16 15 12 18 18 C 1.37870 * 120.00021 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99991 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47156 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47456 * 120.00121 * 20 18 16 23 23 H 1.48507 * 109.47046 * 240.00089 * 20 18 16 24 24 C 1.46850 * 111.19352 * 298.25822 * 11 10 9 25 25 H 1.08999 * 109.47659 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47592 * 300.00297 * 1 2 3 27 27 H 1.08999 * 109.47084 * 60.00195 * 1 2 3 28 28 H 1.08996 * 109.47090 * 239.99632 * 2 1 3 29 29 H 1.08999 * 109.47084 * 119.99805 * 2 1 3 30 30 H 1.08997 * 109.52489 * 297.50148 * 8 6 4 31 31 H 1.09002 * 109.52486 * 57.69345 * 8 6 4 32 32 H 1.08997 * 109.50768 * 182.44531 * 9 8 6 33 33 H 1.09004 * 109.50064 * 62.36388 * 9 8 6 34 34 H 1.09000 * 109.46303 * 299.13753 * 10 9 8 35 35 H 1.09005 * 109.46226 * 179.17456 * 10 9 8 36 36 H 1.09001 * 109.47121 * 59.99580 * 14 12 11 37 37 H 1.08998 * 109.47876 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.47188 * 300.00130 * 14 12 11 39 39 H 1.08996 * 109.47088 * 55.00217 * 15 12 11 40 40 H 1.09001 * 109.46792 * 175.00261 * 15 12 11 41 41 H 0.96991 * 120.00628 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.46475 * 301.72286 * 24 11 10 43 43 H 1.09009 * 109.45058 * 181.75604 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5855 3.4695 -0.8904 8 6 3.4502 3.6857 1.2502 9 6 4.0884 5.0774 1.2729 10 6 5.6119 4.9361 1.2387 11 7 6.0107 4.2148 0.0234 12 6 7.4730 4.1813 -0.1129 13 1 7.7414 3.6292 -1.0137 14 6 8.0834 3.4917 1.1088 15 6 8.0088 5.6109 -0.2124 16 6 7.5048 6.2492 -1.4811 17 1 6.8657 5.6911 -2.1494 18 6 7.8585 7.5459 -1.7881 19 7 8.6363 8.2257 -0.9741 20 14 7.2331 8.3373 -3.3603 21 1 6.3825 7.3688 -4.0976 22 1 6.4339 9.5428 -3.0238 23 1 8.3864 8.7293 -4.2099 24 6 5.4490 2.8582 0.0027 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3647 3.7824 1.2300 31 1 3.7511 3.1331 2.1403 32 1 3.7917 5.5992 2.1827 33 1 3.7560 5.6444 0.4033 34 1 5.9450 4.3816 2.1159 35 1 6.0686 5.9259 1.2399 36 1 7.7017 2.4732 1.1797 37 1 9.1684 3.4663 1.0075 38 1 7.8150 4.0437 2.0096 39 1 7.6655 6.1882 0.6460 40 1 9.0986 5.5904 -0.2241 41 1 8.8849 9.1381 -1.1898 42 1 5.7828 2.3133 0.8858 43 1 5.7874 2.3388 -0.8939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351610827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:44 Heat of formation + Delta-G solvation = -119.194273 kcal Electronic energy + Delta-G solvation = -21604.476635 eV Core-core repulsion = 18455.292825 eV Total energy + Delta-G solvation = -3149.183810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81937 -40.12986 -37.74139 -36.36345 -34.50458 -32.75598 -31.97199 -31.22610 -29.13811 -25.93947 -25.66816 -24.52579 -23.67577 -22.48916 -21.09195 -20.11003 -18.66087 -18.31908 -17.61305 -17.59674 -16.52462 -16.49841 -15.86868 -15.42590 -15.24193 -14.97622 -14.70622 -14.48195 -14.11315 -13.73863 -13.61101 -13.52706 -13.38168 -13.08993 -12.91124 -12.81843 -12.61848 -12.59073 -12.40562 -12.33116 -11.89559 -11.77908 -11.71316 -11.51069 -11.33660 -11.24709 -11.04927 -10.89530 -10.44408 -8.95750 -8.07404 -6.11941 1.11375 1.43419 1.44868 1.57741 1.59840 2.49992 3.10999 3.29410 3.53238 3.75192 3.88086 4.01669 4.09132 4.15846 4.18454 4.30041 4.32581 4.36078 4.44120 4.52752 4.63393 4.72909 4.76294 4.83785 4.88689 4.93915 4.98145 5.05865 5.07881 5.15013 5.20643 5.21103 5.29052 5.43384 5.48407 5.54440 5.72094 5.92934 6.32147 6.42149 6.50533 6.69572 7.01863 7.53999 9.04785 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.004487 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.748523 B = 6238.484312 C = 6681.382955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.477 3.523 5 O -0.538 6.538 6 C -0.074 4.074 7 H 0.120 0.880 8 C -0.098 4.098 9 C -0.108 4.108 10 C 0.051 3.949 11 N -0.524 5.524 12 C 0.095 3.905 13 H 0.061 0.939 14 C -0.174 4.174 15 C 0.036 3.964 16 C -0.497 4.497 17 H 0.058 0.942 18 C -0.003 4.003 19 N -0.940 5.940 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.285 1.285 24 C 0.076 3.924 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.005 0.995 40 H -0.009 1.009 41 H 0.258 0.742 42 H 0.036 0.964 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.228 -13.744 5.096 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.321 3.679 5 O -0.428 6.428 6 C -0.093 4.093 7 H 0.138 0.862 8 C -0.135 4.135 9 C -0.146 4.146 10 C -0.077 4.077 11 N -0.248 5.248 12 C -0.013 4.013 13 H 0.080 0.920 14 C -0.233 4.233 15 C -0.001 4.001 16 C -0.536 4.536 17 H 0.076 0.924 18 C -0.199 4.199 19 N -0.582 5.582 20 Si 0.781 3.219 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.211 1.211 24 C -0.052 4.052 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.023 0.977 40 H 0.009 0.991 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.167 -13.651 4.702 21.676 hybrid contribution 0.767 0.066 -0.178 0.790 sum -15.400 -13.585 4.524 21.028 Atomic orbital electron populations 1.21819 0.90252 1.04361 1.03797 1.23313 0.97204 0.79253 1.02497 1.86518 1.23537 1.33693 1.83475 1.23828 0.80780 0.92343 0.70938 1.90640 1.61179 1.44125 1.46863 1.21067 0.95283 0.89189 1.03789 0.86177 1.21514 1.01952 0.95404 0.94635 1.21551 0.93177 0.96596 1.03236 1.22145 0.96875 0.98560 0.90094 1.61894 1.09951 1.14443 1.38511 1.21616 0.86022 0.97319 0.96383 0.92049 1.22386 1.01487 1.00198 0.99247 1.19087 0.93863 0.90981 0.96199 1.21502 1.28104 0.97737 1.06245 0.92403 1.25817 0.95852 0.98277 0.99972 1.70092 1.38284 1.10998 1.38827 0.85540 0.77997 0.78339 0.79981 1.18975 1.20779 1.21099 1.21773 0.92251 0.90134 1.01022 0.88196 0.91075 0.91340 0.91548 0.91278 0.88483 0.91533 0.89223 0.91455 0.94836 0.92131 0.92234 0.92352 0.92738 0.97730 0.99051 0.93299 0.94592 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.89 6.19 71.98 0.45 1.33 16 3 O -0.36 -8.02 10.15 -51.46 -0.52 -8.55 16 4 C 0.48 12.77 7.26 71.24 0.52 13.28 16 5 O -0.54 -17.28 15.73 21.98 0.35 -16.93 16 6 C -0.07 -1.96 2.79 -11.49 -0.03 -1.99 16 7 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 8 C -0.10 -2.19 5.22 30.68 0.16 -2.03 16 9 C -0.11 -2.85 6.09 30.65 0.19 -2.66 16 10 C 0.05 1.74 4.64 86.33 0.40 2.14 16 11 N -0.52 -19.56 4.36 -871.13 -3.80 -23.36 16 12 C 0.09 3.93 2.30 44.92 0.10 4.04 16 13 H 0.06 2.64 8.08 -2.38 -0.02 2.62 16 14 C -0.17 -6.10 8.50 71.98 0.61 -5.48 16 15 C 0.04 1.85 4.27 29.85 0.13 1.98 16 16 C -0.50 -28.02 8.84 25.60 0.23 -27.79 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 19 N -0.94 -57.20 13.29 21.45 0.28 -56.92 16 20 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 24 C 0.08 2.45 3.60 86.32 0.31 2.76 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.03 1.07 6.62 -2.39 -0.02 1.05 16 35 H 0.06 2.49 5.93 -2.38 -0.01 2.48 16 36 H 0.06 1.87 6.65 -2.39 -0.02 1.85 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.87 6.52 -2.39 -0.02 1.85 16 39 H 0.00 0.25 6.05 -2.39 -0.01 0.23 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 41 H 0.26 14.89 8.31 -92.72 -0.77 14.12 16 42 H 0.04 1.15 6.67 -2.39 -0.02 1.14 16 43 H 0.07 2.23 8.05 -2.38 -0.02 2.21 16 Total: -1.00 -66.52 338.14 3.56 -62.96 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.96 Total: 10.60 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.26 Total: -15.02 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -3.51 Total: -80.28 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.18 Total: -25.48 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.52 3.56 -62.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351610827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.235 kcal (2) G-P(sol) polarization free energy of solvation -66.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds