Wall clock time and date at job start Mon Mar 30 2020 01:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47098 * 2 1 4 4 C 1.34231 * 117.00129 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.50689 * 120.00032 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.50868 * 300.07977 * 6 4 3 8 8 C 1.53121 * 109.53843 * 60.17651 * 6 4 3 9 9 C 1.53121 * 109.16431 * 177.61407 * 8 6 4 10 10 C 1.53039 * 109.27645 * 302.34631 * 9 8 6 11 11 N 1.46852 * 109.52156 * 59.18165 * 10 9 8 12 12 C 1.46905 * 110.99617 * 174.16262 * 11 10 9 13 13 H 1.09000 * 109.46687 * 309.85172 * 12 11 10 14 14 C 1.52992 * 109.47406 * 69.86075 * 12 11 10 15 15 C 1.53005 * 109.46648 * 189.86126 * 12 11 10 16 16 C 1.50698 * 109.47290 * 63.00297 * 15 12 11 17 17 H 1.07996 * 120.00146 * 5.12786 * 16 15 12 18 18 C 1.37881 * 119.99895 * 185.13869 * 16 15 12 19 19 N 1.31506 * 120.00082 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47079 * 59.99668 * 20 18 16 22 22 H 1.48495 * 109.47177 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47155 * 299.99885 * 20 18 16 24 24 C 1.46847 * 111.19620 * 298.25202 * 11 10 9 25 25 H 1.09007 * 109.46871 * 60.00528 * 1 2 3 26 26 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47504 * 300.00502 * 1 2 3 28 28 H 1.08998 * 109.47504 * 239.99498 * 2 1 3 29 29 H 1.09007 * 109.46871 * 119.99472 * 2 1 3 30 30 H 1.09001 * 109.52046 * 297.52042 * 8 6 4 31 31 H 1.08998 * 109.51757 * 57.71023 * 8 6 4 32 32 H 1.08991 * 109.50444 * 182.40807 * 9 8 6 33 33 H 1.08994 * 109.50045 * 62.28307 * 9 8 6 34 34 H 1.08997 * 109.46499 * 299.16417 * 10 9 8 35 35 H 1.08998 * 109.46446 * 179.19338 * 10 9 8 36 36 H 1.08997 * 109.47252 * 299.99728 * 14 12 11 37 37 H 1.08996 * 109.47393 * 60.00352 * 14 12 11 38 38 H 1.08999 * 109.47225 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.47074 * 183.00190 * 15 12 11 40 40 H 1.09001 * 109.47274 * 302.99754 * 15 12 11 41 41 H 0.97000 * 120.00154 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.46039 * 181.75861 * 24 11 10 43 43 H 1.09002 * 109.46272 * 301.74011 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5843 3.4701 -0.8896 8 6 3.4526 3.6856 1.2512 9 6 4.0900 5.0777 1.2724 10 6 5.6134 4.9364 1.2363 11 7 6.0107 4.2149 0.0205 12 6 7.4728 4.1813 -0.1176 13 1 7.8721 5.1886 0.0004 14 6 8.0658 3.2683 0.9572 15 6 7.8420 3.6455 -1.5024 16 6 7.3210 4.5844 -2.5597 17 1 6.8537 5.5149 -2.2728 18 6 7.4405 4.2555 -3.8934 19 7 8.0097 3.1226 -4.2427 20 14 6.7940 5.4191 -5.2039 21 1 7.4905 6.7259 -5.0928 22 1 7.0432 4.8386 -6.5478 23 1 5.3348 5.6181 -5.0130 24 6 5.4490 2.8582 0.0007 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.3670 3.7823 1.2331 31 1 3.7552 3.1329 2.1406 32 1 3.7945 5.5995 2.1825 33 1 3.7564 5.6439 0.4028 34 1 5.9476 4.3820 2.1132 35 1 6.0701 5.9261 1.2367 36 1 7.8028 3.6500 1.9437 37 1 7.6666 2.2610 0.8391 38 1 9.1507 3.2437 0.8550 39 1 8.9262 3.5703 -1.5857 40 1 7.3978 2.6598 -1.6410 41 1 8.0942 2.8914 -5.1810 42 1 5.7861 2.3386 -0.8961 43 1 5.7838 2.3136 0.8836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351610829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:48 Heat of formation + Delta-G solvation = -101.148307 kcal Electronic energy + Delta-G solvation = -21853.852223 eV Core-core repulsion = 18705.450945 eV Total energy + Delta-G solvation = -3148.401278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55671 -38.73847 -36.48368 -34.87210 -32.49667 -31.83800 -30.80825 -29.55702 -27.26552 -24.75157 -24.15040 -22.89258 -22.73932 -20.88006 -19.87687 -18.69062 -17.36564 -16.48820 -16.42445 -16.10827 -15.22461 -14.55548 -14.38628 -14.32448 -13.83526 -13.58025 -13.36580 -13.25152 -12.85284 -12.57830 -12.27645 -12.06632 -11.95164 -11.74021 -11.69120 -11.43587 -11.11696 -11.03316 -10.73994 -10.60826 -10.55079 -10.51678 -10.31379 -10.07621 -10.04410 -9.85097 -9.11763 -8.93624 -8.21740 -7.46692 -5.84411 -3.82331 2.40266 2.73616 3.42942 3.46940 3.50001 4.49351 4.59573 4.73734 4.81232 4.88332 4.94738 5.07476 5.15780 5.24471 5.42778 5.52372 5.58503 5.63415 5.65393 5.75675 5.80818 5.82404 5.86853 5.89840 5.99539 6.06858 6.10314 6.21048 6.31571 6.41433 6.51031 6.57582 6.66472 6.77004 7.01608 7.55040 7.71371 7.88388 7.97150 8.05171 8.16105 8.61521 9.22949 9.78800 11.27535 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.005896 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.710102 B = 4747.474489 C = 5548.182950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.505 6.505 6 C -0.077 4.077 7 H 0.119 0.881 8 C -0.107 4.107 9 C -0.113 4.113 10 C 0.048 3.952 11 N -0.509 5.509 12 C 0.089 3.911 13 H 0.071 0.929 14 C -0.185 4.185 15 C 0.028 3.972 16 C -0.489 4.489 17 H 0.060 0.940 18 C 0.051 3.949 19 N -0.903 5.903 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.075 3.925 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.024 0.976 41 H 0.257 0.743 42 H 0.097 0.903 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 -1.636 12.293 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.277 6.277 4 C 0.311 3.689 5 O -0.392 6.392 6 C -0.096 4.096 7 H 0.137 0.863 8 C -0.145 4.145 9 C -0.151 4.151 10 C -0.080 4.080 11 N -0.232 5.232 12 C -0.018 4.018 13 H 0.089 0.911 14 C -0.244 4.244 15 C -0.009 4.009 16 C -0.528 4.528 17 H 0.078 0.922 18 C -0.148 4.148 19 N -0.544 5.544 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.053 4.053 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.459 -1.797 11.731 17.207 hybrid contribution 0.006 -0.144 -0.171 0.224 sum -12.453 -1.941 11.560 17.102 Atomic orbital electron populations 1.21791 0.92820 1.02741 1.03457 1.22982 0.95190 0.80763 1.02534 1.86512 1.24992 1.31889 1.84272 1.23901 0.80211 0.92909 0.71857 1.90667 1.60322 1.43231 1.44934 1.21146 0.97432 0.88792 1.02253 0.86269 1.21536 1.00699 0.96499 0.95760 1.21568 0.95412 0.95938 1.02191 1.22142 0.95164 0.98963 0.91761 1.61971 1.11290 1.14932 1.35008 1.21897 0.84366 0.98378 0.97178 0.91093 1.22533 1.01647 1.01227 0.99034 1.19226 0.96114 0.96888 0.88717 1.21102 1.36637 1.04805 0.90237 0.92224 1.24997 0.95906 0.95230 0.98702 1.69954 1.45032 1.22747 1.16669 0.86713 0.79434 0.81178 0.80929 1.20516 1.21722 1.20400 1.21868 0.89833 0.90995 1.02653 0.91428 0.90456 0.91614 0.91225 0.91491 0.90900 0.92198 0.91643 0.90566 0.95661 0.90967 0.94167 0.92686 0.92503 0.96631 0.95827 0.93291 0.88465 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -5.06 10.15 -39.26 -0.40 -5.46 16 4 C 0.47 7.68 7.26 36.00 0.26 7.94 16 5 O -0.50 -9.69 15.73 -18.75 -0.30 -9.99 16 6 C -0.08 -1.22 2.79 -91.69 -0.26 -1.47 16 7 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 8 C -0.11 -1.37 5.22 -26.61 -0.14 -1.51 16 9 C -0.11 -1.43 6.09 -26.65 -0.16 -1.59 16 10 C 0.05 0.72 5.13 -3.83 -0.02 0.70 16 11 N -0.51 -9.57 4.27 -226.68 -0.97 -10.54 16 12 C 0.09 1.82 2.28 -67.71 -0.15 1.67 16 13 H 0.07 1.44 7.99 -51.93 -0.41 1.03 16 14 C -0.19 -3.28 8.45 37.15 0.31 -2.97 16 15 C 0.03 0.71 4.34 -27.88 -0.12 0.59 16 16 C -0.49 -13.67 8.78 -34.44 -0.30 -13.98 16 17 H 0.06 1.65 7.75 -52.49 -0.41 1.24 16 18 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 19 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.07 1.39 3.12 -3.83 -0.01 1.38 16 25 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.07 0.74 8.13 -51.92 -0.42 0.32 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.03 0.37 6.87 -51.93 -0.36 0.01 16 35 H 0.07 1.05 8.02 -51.93 -0.42 0.63 16 36 H 0.04 0.62 6.81 -51.93 -0.35 0.27 16 37 H 0.05 1.01 6.46 -51.93 -0.34 0.68 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.65 6.29 -51.93 -0.33 0.33 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.10 2.19 6.13 -51.93 -0.32 1.87 16 43 H 0.03 0.63 6.52 -51.93 -0.34 0.29 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -31.53 338.52 -8.39 -39.93 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.47 Total: -1.57 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.08 Total: -7.80 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.23 Total: -37.32 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.69 Total: -15.44 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.53 -8.39 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351610829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.222 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds