Wall clock time and date at job start Mon Mar 30 2020 01:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47098 * 2 1 4 4 C 1.34231 * 117.00129 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.50689 * 120.00032 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.50868 * 300.07977 * 6 4 3 8 8 C 1.53121 * 109.53843 * 60.17651 * 6 4 3 9 9 C 1.53121 * 109.16431 * 177.61407 * 8 6 4 10 10 C 1.53039 * 109.27645 * 302.34631 * 9 8 6 11 11 N 1.46852 * 109.52156 * 59.18165 * 10 9 8 12 12 C 1.46905 * 110.99617 * 174.16262 * 11 10 9 13 13 H 1.09000 * 109.46687 * 309.85172 * 12 11 10 14 14 C 1.52992 * 109.47406 * 69.86075 * 12 11 10 15 15 C 1.53005 * 109.46648 * 189.86126 * 12 11 10 16 16 C 1.50698 * 109.47290 * 63.00297 * 15 12 11 17 17 H 1.07996 * 120.00146 * 5.12786 * 16 15 12 18 18 C 1.37881 * 119.99895 * 185.13869 * 16 15 12 19 19 N 1.31506 * 120.00082 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47079 * 59.99668 * 20 18 16 22 22 H 1.48495 * 109.47177 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47155 * 299.99885 * 20 18 16 24 24 C 1.46847 * 111.19620 * 298.25202 * 11 10 9 25 25 H 1.09007 * 109.46871 * 60.00528 * 1 2 3 26 26 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47504 * 300.00502 * 1 2 3 28 28 H 1.08998 * 109.47504 * 239.99498 * 2 1 3 29 29 H 1.09007 * 109.46871 * 119.99472 * 2 1 3 30 30 H 1.09001 * 109.52046 * 297.52042 * 8 6 4 31 31 H 1.08998 * 109.51757 * 57.71023 * 8 6 4 32 32 H 1.08991 * 109.50444 * 182.40807 * 9 8 6 33 33 H 1.08994 * 109.50045 * 62.28307 * 9 8 6 34 34 H 1.08997 * 109.46499 * 299.16417 * 10 9 8 35 35 H 1.08998 * 109.46446 * 179.19338 * 10 9 8 36 36 H 1.08997 * 109.47252 * 299.99728 * 14 12 11 37 37 H 1.08996 * 109.47393 * 60.00352 * 14 12 11 38 38 H 1.08999 * 109.47225 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.47074 * 183.00190 * 15 12 11 40 40 H 1.09001 * 109.47274 * 302.99754 * 15 12 11 41 41 H 0.97000 * 120.00154 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.46039 * 181.75861 * 24 11 10 43 43 H 1.09002 * 109.46272 * 301.74011 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5843 3.4701 -0.8896 8 6 3.4526 3.6856 1.2512 9 6 4.0900 5.0777 1.2724 10 6 5.6134 4.9364 1.2363 11 7 6.0107 4.2149 0.0205 12 6 7.4728 4.1813 -0.1176 13 1 7.8721 5.1886 0.0004 14 6 8.0658 3.2683 0.9572 15 6 7.8420 3.6455 -1.5024 16 6 7.3210 4.5844 -2.5597 17 1 6.8537 5.5149 -2.2728 18 6 7.4405 4.2555 -3.8934 19 7 8.0097 3.1226 -4.2427 20 14 6.7940 5.4191 -5.2039 21 1 7.4905 6.7259 -5.0928 22 1 7.0432 4.8386 -6.5478 23 1 5.3348 5.6181 -5.0130 24 6 5.4490 2.8582 0.0007 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.3670 3.7823 1.2331 31 1 3.7552 3.1329 2.1406 32 1 3.7945 5.5995 2.1825 33 1 3.7564 5.6439 0.4028 34 1 5.9476 4.3820 2.1132 35 1 6.0701 5.9261 1.2367 36 1 7.8028 3.6500 1.9437 37 1 7.6666 2.2610 0.8391 38 1 9.1507 3.2437 0.8550 39 1 8.9262 3.5703 -1.5857 40 1 7.3978 2.6598 -1.6410 41 1 8.0942 2.8914 -5.1810 42 1 5.7861 2.3386 -0.8961 43 1 5.7838 2.3136 0.8836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351610829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:48 Heat of formation + Delta-G solvation = -120.270913 kcal Electronic energy + Delta-G solvation = -21854.681442 eV Core-core repulsion = 18705.450945 eV Total energy + Delta-G solvation = -3149.230496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.83799 -40.10629 -37.73962 -36.37433 -34.51823 -32.84575 -31.97486 -31.10450 -29.15654 -25.95980 -25.66447 -24.66476 -23.75401 -22.09458 -21.28955 -20.13080 -18.66048 -18.31629 -17.74270 -17.63016 -16.53216 -16.50131 -15.77283 -15.49265 -15.17678 -14.90158 -14.65705 -14.47691 -14.15575 -13.74072 -13.67824 -13.60945 -13.44440 -12.99617 -12.92686 -12.81873 -12.61235 -12.53664 -12.41370 -12.30083 -11.96001 -11.81543 -11.66061 -11.53643 -11.46165 -11.19673 -11.09464 -10.87309 -10.45893 -8.93420 -8.07617 -6.12889 1.10167 1.42671 1.45929 1.53078 1.58826 2.48895 3.11725 3.29414 3.53315 3.77838 3.88692 3.98690 4.07479 4.15871 4.16990 4.30750 4.33184 4.33431 4.42838 4.53139 4.67240 4.74579 4.80824 4.83908 4.88853 4.92076 4.98668 5.07266 5.10212 5.14015 5.20548 5.22510 5.26333 5.41270 5.48457 5.50331 5.70900 5.90608 6.29059 6.42154 6.54710 6.68053 7.01163 7.52830 9.04616 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.005896 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.710102 B = 4747.474489 C = 5548.182950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.542 6.542 6 C -0.075 4.075 7 H 0.112 0.888 8 C -0.098 4.098 9 C -0.107 4.107 10 C 0.045 3.955 11 N -0.525 5.525 12 C 0.096 3.904 13 H 0.076 0.924 14 C -0.175 4.175 15 C 0.033 3.967 16 C -0.495 4.495 17 H 0.063 0.937 18 C -0.008 4.008 19 N -0.944 5.944 20 Si 0.957 3.043 21 H -0.267 1.267 22 H -0.291 1.291 23 H -0.270 1.270 24 C 0.086 3.914 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.058 0.942 39 H -0.011 1.011 40 H -0.009 1.009 41 H 0.257 0.743 42 H 0.045 0.955 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 0.088 13.897 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.316 3.684 5 O -0.432 6.432 6 C -0.094 4.094 7 H 0.130 0.870 8 C -0.136 4.136 9 C -0.144 4.144 10 C -0.083 4.083 11 N -0.249 5.249 12 C -0.012 4.012 13 H 0.094 0.906 14 C -0.233 4.233 15 C -0.004 4.004 16 C -0.534 4.534 17 H 0.081 0.919 18 C -0.203 4.203 19 N -0.586 5.586 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.195 1.195 24 C -0.043 4.043 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.007 0.993 40 H 0.009 0.991 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.738 -0.049 13.356 19.890 hybrid contribution 0.696 -0.739 -0.658 1.210 sum -14.042 -0.789 12.698 18.948 Atomic orbital electron populations 1.21810 0.89804 1.04438 1.03904 1.23331 0.97493 0.79345 1.02299 1.86503 1.23365 1.33626 1.83560 1.24005 0.80824 0.92656 0.70904 1.90654 1.61327 1.44362 1.46834 1.21108 0.95279 0.89043 1.04012 0.86964 1.21550 1.02083 0.96121 0.93832 1.21577 0.93229 0.95878 1.03747 1.22301 0.97194 0.98694 0.90069 1.61872 1.09983 1.15039 1.38005 1.21617 0.86191 0.98635 0.94727 0.90599 1.22393 1.01499 0.99901 0.99556 1.19082 0.93966 0.95290 0.92078 1.21442 1.35932 1.04992 0.90985 0.91865 1.25896 0.96267 0.96852 1.01304 1.70112 1.46673 1.24827 1.17004 0.85613 0.79128 0.79231 0.77710 1.19162 1.21703 1.19477 1.21598 0.91980 0.90677 1.00013 0.91433 0.88135 0.90649 0.92235 0.91141 0.88540 0.91474 0.88026 0.91147 0.94549 0.90163 0.91141 0.94102 0.92293 0.99307 0.99103 0.93434 0.93646 0.94885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.29 71.98 0.74 -1.25 16 2 C 0.05 1.07 6.19 71.98 0.45 1.52 16 3 O -0.35 -9.62 10.15 -51.42 -0.52 -10.14 16 4 C 0.47 15.54 7.26 71.23 0.52 16.06 16 5 O -0.54 -21.58 15.73 21.95 0.35 -21.23 16 6 C -0.07 -2.35 2.79 -11.49 -0.03 -2.38 16 7 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 8 C -0.10 -2.22 5.22 30.68 0.16 -2.06 16 9 C -0.11 -2.30 6.09 30.65 0.19 -2.11 16 10 C 0.04 1.22 5.13 86.33 0.44 1.67 16 11 N -0.53 -19.61 4.27 -871.09 -3.72 -23.32 16 12 C 0.10 3.98 2.28 44.91 0.10 4.08 16 13 H 0.08 3.04 7.99 -2.39 -0.02 3.02 16 14 C -0.17 -6.15 8.45 71.98 0.61 -5.54 16 15 C 0.03 1.77 4.34 29.85 0.13 1.90 16 16 C -0.50 -28.37 8.78 25.60 0.22 -28.14 16 17 H 0.06 3.51 7.75 -2.91 -0.02 3.48 16 18 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 19 N -0.94 -59.67 13.29 21.45 0.28 -59.38 16 20 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 C 0.09 3.29 3.12 86.33 0.27 3.56 16 25 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 29 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 0.93 6.87 -2.39 -0.02 0.91 16 35 H 0.08 2.08 8.02 -2.39 -0.02 2.06 16 36 H 0.07 2.05 6.81 -2.39 -0.02 2.03 16 37 H 0.04 1.54 6.46 -2.39 -0.02 1.52 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H -0.01 -0.56 6.29 -2.39 -0.02 -0.58 16 41 H 0.26 15.48 8.31 -92.71 -0.77 14.70 16 42 H 0.04 2.20 6.13 -2.39 -0.01 2.18 16 43 H 0.03 1.25 6.52 -2.39 -0.02 1.24 16 Total: -1.00 -71.27 338.52 3.64 -67.63 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.96 Total: 11.23 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.26 Total: -12.69 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -3.43 Total: -82.71 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.18 Total: -31.38 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.27 3.64 -67.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351610829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.643 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds