Wall clock time and date at job start Mon Mar 30 2020 01:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47167 * 2 1 4 4 C 1.34223 * 117.00256 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00028 * 359.72628 * 4 3 2 6 6 C 1.50697 * 120.00444 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.50361 * 60.07455 * 6 4 3 8 8 C 1.53123 * 109.50187 * 299.99750 * 6 4 3 9 9 C 1.53114 * 109.16378 * 182.40304 * 8 6 4 10 10 C 1.53036 * 109.27796 * 57.65269 * 9 8 6 11 11 N 1.46844 * 109.52569 * 300.82759 * 10 9 8 12 12 C 1.46900 * 111.00179 * 185.83767 * 11 10 9 13 13 H 1.09005 * 109.47243 * 50.08837 * 12 11 10 14 14 C 1.52998 * 109.47060 * 290.09542 * 12 11 10 15 15 C 1.52998 * 109.47474 * 170.09259 * 12 11 10 16 16 C 1.50700 * 109.46885 * 296.29309 * 15 12 11 17 17 H 1.07997 * 120.00060 * 4.90365 * 16 15 12 18 18 C 1.37878 * 119.99597 * 184.90506 * 16 15 12 19 19 N 1.31512 * 120.00165 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46906 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47066 * 119.99471 * 20 18 16 23 23 H 1.48493 * 109.47155 * 239.99807 * 20 18 16 24 24 C 1.46846 * 111.20074 * 61.73728 * 11 10 9 25 25 H 1.08995 * 109.47357 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47240 * 299.99823 * 1 2 3 27 27 H 1.08999 * 109.47103 * 59.99739 * 1 2 3 28 28 H 1.08998 * 109.46742 * 240.00131 * 2 1 3 29 29 H 1.08999 * 109.47103 * 120.00261 * 2 1 3 30 30 H 1.08998 * 109.52407 * 302.31054 * 8 6 4 31 31 H 1.09001 * 109.51684 * 62.43363 * 8 6 4 32 32 H 1.08995 * 109.50587 * 177.59903 * 9 8 6 33 33 H 1.09005 * 109.50429 * 297.71848 * 9 8 6 34 34 H 1.09004 * 109.45930 * 60.83895 * 10 9 8 35 35 H 1.08996 * 109.46366 * 180.81367 * 10 9 8 36 36 H 1.09003 * 109.47708 * 179.97438 * 14 12 11 37 37 H 1.09000 * 109.47204 * 299.99679 * 14 12 11 38 38 H 1.09006 * 109.47670 * 59.99631 * 14 12 11 39 39 H 1.08996 * 109.46699 * 56.29581 * 15 12 11 40 40 H 1.08999 * 109.46950 * 176.29282 * 15 12 11 41 41 H 0.97001 * 120.00138 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46189 * 178.24462 * 24 11 10 43 43 H 1.08997 * 109.46122 * 58.27756 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5866 3.4691 0.8909 8 6 3.4487 3.6864 -1.2494 9 6 4.0860 5.0784 -1.2717 10 6 5.6095 4.9371 -1.2405 11 7 6.0107 4.2148 -0.0265 12 6 7.4732 4.1811 0.1070 13 1 7.8723 5.1884 -0.0126 14 6 8.0628 3.2680 -0.9698 15 6 7.8469 3.6455 1.4906 16 6 7.3443 4.5934 2.5488 17 1 6.7438 5.4462 2.2686 18 6 7.6511 4.3719 3.8746 19 7 8.3819 3.3331 4.2158 20 14 7.0275 5.5464 5.1865 21 1 6.2332 6.6261 4.5471 22 1 6.1724 4.8055 6.1483 23 1 8.1815 6.1418 5.9068 24 6 5.4490 2.8581 -0.0058 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7484 3.1342 -2.1401 31 1 2.3631 3.7820 -1.2282 32 1 3.7875 5.6008 -2.1805 33 1 3.7552 5.6441 -0.4007 34 1 5.9409 4.3832 -2.1189 35 1 6.0661 5.9268 -1.2417 36 1 9.1480 3.2433 -0.8711 37 1 7.6638 2.2607 -0.8503 38 1 7.7966 3.6496 -1.9555 39 1 7.3928 2.6652 1.6354 40 1 8.9308 3.5584 1.5659 41 1 8.5974 3.1770 5.1486 42 1 5.7891 2.3379 0.8897 43 1 5.7812 2.3140 -0.8899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351610830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:50 Heat of formation + Delta-G solvation = -120.509191 kcal Electronic energy + Delta-G solvation = -21805.999672 eV Core-core repulsion = 18656.758843 eV Total energy + Delta-G solvation = -3149.240829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83686 -40.11032 -37.73742 -36.37566 -34.52502 -32.84489 -31.97639 -31.09952 -29.16299 -25.95945 -25.66815 -24.66920 -23.75177 -22.09092 -21.29039 -20.13310 -18.65804 -18.31694 -17.73779 -17.62717 -16.55424 -16.48565 -15.77410 -15.49409 -15.17637 -14.90564 -14.65625 -14.47387 -14.17827 -13.69992 -13.68036 -13.61144 -13.46106 -13.02531 -12.93608 -12.81543 -12.63904 -12.56567 -12.38003 -12.28944 -11.90021 -11.82286 -11.64730 -11.53203 -11.47452 -11.19583 -11.06566 -10.88881 -10.47722 -8.94693 -8.08546 -6.13880 1.10538 1.42368 1.43039 1.56607 1.59027 2.48567 3.11519 3.28159 3.53346 3.77829 3.88873 3.99096 4.07753 4.16084 4.17064 4.30798 4.33366 4.33798 4.42741 4.52728 4.67017 4.74610 4.80677 4.84136 4.88742 4.92403 4.98762 5.07070 5.10412 5.14226 5.20811 5.21899 5.25673 5.41667 5.48439 5.50877 5.71692 5.91004 6.28771 6.42208 6.53946 6.68403 7.01727 7.52467 9.04132 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.005660 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.692431 B = 4946.179639 C = 5688.419280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.542 6.542 6 C -0.075 4.075 7 H 0.114 0.886 8 C -0.099 4.099 9 C -0.107 4.107 10 C 0.045 3.955 11 N -0.526 5.526 12 C 0.097 3.903 13 H 0.075 0.925 14 C -0.175 4.175 15 C 0.034 3.966 16 C -0.496 4.496 17 H 0.066 0.934 18 C -0.009 4.009 19 N -0.944 5.944 20 Si 0.958 3.042 21 H -0.259 1.259 22 H -0.286 1.286 23 H -0.283 1.283 24 C 0.084 3.916 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.041 0.959 38 H 0.070 0.930 39 H -0.014 1.014 40 H -0.007 1.007 41 H 0.257 0.743 42 H 0.046 0.954 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.574 -0.324 -13.837 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.316 3.684 5 O -0.432 6.432 6 C -0.094 4.094 7 H 0.132 0.868 8 C -0.136 4.136 9 C -0.144 4.144 10 C -0.083 4.083 11 N -0.250 5.250 12 C -0.011 4.011 13 H 0.093 0.907 14 C -0.233 4.233 15 C -0.004 4.004 16 C -0.534 4.534 17 H 0.084 0.916 18 C -0.205 4.205 19 N -0.587 5.587 20 Si 0.784 3.216 21 H -0.183 1.183 22 H -0.213 1.213 23 H -0.209 1.209 24 C -0.044 4.044 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.004 0.996 40 H 0.011 0.989 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.518 -0.441 -13.302 20.443 hybrid contribution 0.775 -0.731 0.654 1.250 sum -14.743 -1.172 -12.648 19.460 Atomic orbital electron populations 1.21810 0.89836 1.04423 1.03905 1.23327 0.97470 0.79348 1.02307 1.86502 1.23372 1.33613 1.83550 1.24001 0.80819 0.92647 0.70907 1.90656 1.61320 1.44377 1.46839 1.21108 0.95200 0.89043 1.04063 0.86773 1.21549 1.02073 0.96086 0.93909 1.21574 0.93169 0.95921 1.03759 1.22297 0.97208 0.98663 0.90092 1.61873 1.09858 1.15048 1.38203 1.21617 0.86175 0.98632 0.94717 0.90666 1.22396 1.01473 0.99932 0.99544 1.19077 0.94233 0.94933 0.92107 1.21557 1.30147 1.10176 0.91547 0.91599 1.25927 0.95960 0.97218 1.01363 1.70127 1.40645 1.30410 1.17476 0.85487 0.78005 0.79201 0.78883 1.18283 1.21281 1.20865 1.21616 0.92027 0.90648 1.00111 0.88166 0.91413 0.90671 0.91171 0.92184 0.91519 0.88513 0.88077 0.91106 0.94552 0.90236 0.92392 0.94010 0.91150 0.99600 0.98911 0.93406 0.93499 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.05 1.05 6.19 71.98 0.45 1.49 16 3 O -0.35 -9.38 10.15 -51.35 -0.52 -9.90 16 4 C 0.47 15.18 7.26 71.24 0.52 15.70 16 5 O -0.54 -21.18 15.73 21.95 0.35 -20.83 16 6 C -0.07 -2.29 2.79 -11.49 -0.03 -2.32 16 7 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 8 C -0.10 -2.18 5.21 30.67 0.16 -2.02 16 9 C -0.11 -2.27 6.09 30.64 0.19 -2.08 16 10 C 0.04 1.22 5.13 86.33 0.44 1.66 16 11 N -0.53 -19.46 4.26 -871.13 -3.71 -23.16 16 12 C 0.10 3.99 2.27 44.91 0.10 4.09 16 13 H 0.08 3.05 7.99 -2.38 -0.02 3.03 16 14 C -0.17 -6.16 8.45 71.98 0.61 -5.55 16 15 C 0.03 1.81 4.35 29.85 0.13 1.94 16 16 C -0.50 -28.42 8.81 25.60 0.23 -28.20 16 17 H 0.07 3.67 7.71 -2.91 -0.02 3.65 16 18 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 19 N -0.94 -59.56 13.29 21.45 0.28 -59.27 16 20 Si 0.96 45.88 29.54 68.60 2.03 47.90 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 C 0.08 3.18 3.12 86.32 0.27 3.45 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.04 0.93 6.87 -2.38 -0.02 0.91 16 35 H 0.08 2.07 8.02 -2.39 -0.02 2.05 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.56 6.46 -2.39 -0.02 1.55 16 38 H 0.07 2.05 6.81 -2.38 -0.02 2.04 16 39 H -0.01 -0.85 6.27 -2.39 -0.01 -0.86 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.05 2.22 6.11 -2.39 -0.01 2.20 16 43 H 0.03 1.24 6.52 -2.39 -0.02 1.22 16 Total: -1.00 -71.19 338.46 3.65 -67.54 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.96 Total: 10.82 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 4.26 Total: -13.10 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.42 Total: -82.44 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.18 Total: -30.73 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.19 3.65 -67.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351610830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.970 kcal (2) G-P(sol) polarization free energy of solvation -71.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds