Wall clock time and date at job start Mon Mar 30 2020 01:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45195 * 109.47082 * 2 1 4 4 C 1.34233 * 117.00074 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99338 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00117 * 179.97438 * 4 3 2 7 7 C 1.53121 * 109.52408 * 60.31981 * 6 4 3 8 8 C 1.53035 * 109.28022 * 177.56188 * 7 6 4 9 9 N 1.46846 * 109.52157 * 300.81661 * 8 7 6 10 10 C 1.46897 * 111.00257 * 185.83944 * 9 8 7 11 11 H 1.08996 * 109.47186 * 296.37809 * 10 9 8 12 12 C 1.53005 * 109.47185 * 176.37890 * 10 9 8 13 13 C 1.53001 * 109.46979 * 56.38177 * 10 9 8 14 14 C 1.50700 * 109.47123 * 182.46466 * 13 10 9 15 15 H 1.07999 * 119.99928 * 5.59776 * 14 13 10 16 16 C 1.37882 * 119.99630 * 185.60055 * 14 13 10 17 17 N 1.31509 * 120.00358 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99613 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47066 * 60.00283 * 18 16 14 20 20 H 1.48503 * 109.47119 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47653 * 300.00205 * 18 16 14 22 22 C 1.46851 * 111.19987 * 61.73969 * 9 8 7 23 23 C 1.53033 * 109.52370 * 298.26530 * 22 9 8 24 24 H 1.08997 * 109.47170 * 59.99950 * 1 2 3 25 25 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46987 * 300.00062 * 1 2 3 27 27 H 1.08998 * 109.46521 * 239.99997 * 2 1 3 28 28 H 1.08997 * 109.47170 * 120.00050 * 2 1 3 29 29 H 1.09002 * 109.57785 * 300.15950 * 6 4 3 30 30 H 1.09007 * 109.49788 * 297.49853 * 7 6 4 31 31 H 1.08998 * 109.50576 * 57.61590 * 7 6 4 32 32 H 1.09001 * 109.45952 * 180.80419 * 8 7 6 33 33 H 1.08993 * 109.46824 * 60.83118 * 8 7 6 34 34 H 1.09004 * 109.46848 * 300.00318 * 12 10 9 35 35 H 1.08997 * 109.46953 * 60.00046 * 12 10 9 36 36 H 1.09001 * 109.47125 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.47010 * 302.46259 * 13 10 9 38 38 H 1.08997 * 109.47518 * 62.45842 * 13 10 9 39 39 H 0.97001 * 120.00020 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.46348 * 178.24298 * 22 9 8 41 41 H 1.09000 * 109.44805 * 58.27068 * 22 9 8 42 42 H 1.08999 * 109.50425 * 299.22984 * 23 22 9 43 43 H 1.09002 * 109.50074 * 179.11477 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9374 -0.0012 7 6 3.4565 3.6837 1.2526 8 6 4.0930 5.0752 1.2771 9 7 5.5558 4.9457 1.2764 10 6 6.2004 6.2556 1.4391 11 1 5.9588 6.8880 0.5848 12 6 7.7169 6.0708 1.5240 13 6 5.6946 6.9170 2.7227 14 6 6.3097 8.2861 2.8584 15 1 6.9209 8.6848 2.0622 16 6 6.0922 9.0295 3.9991 17 7 5.3476 8.5441 4.9684 18 14 6.8553 10.7262 4.1677 19 1 6.3661 11.6001 3.0712 20 1 6.4718 11.3136 5.4766 21 1 8.3339 10.6141 4.0890 22 6 6.0288 4.2739 0.0593 23 6 5.4499 2.8586 -0.0017 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.5832 3.4718 -0.8892 30 1 2.3708 3.7805 1.2374 31 1 3.7605 3.1287 2.1401 32 1 3.7757 5.6039 2.1759 33 1 3.7776 5.6345 0.3965 34 1 7.9585 5.4383 2.3783 35 1 8.0772 5.5996 0.6096 36 1 8.1951 7.0428 1.6452 37 1 4.6092 7.0089 2.6807 38 1 5.9745 6.3062 3.5809 39 1 5.1950 9.0670 5.7710 40 1 7.1174 4.2208 0.0735 41 1 5.7041 4.8371 -0.8157 42 1 5.7853 2.2906 0.8660 43 1 5.7886 2.3659 -0.9130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351646510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:22 Heat of formation + Delta-G solvation = -121.370307 kcal Electronic energy + Delta-G solvation = -21172.422884 eV Core-core repulsion = 18023.144715 eV Total energy + Delta-G solvation = -3149.278170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78292 -40.03048 -37.79566 -36.40995 -34.57005 -32.70776 -31.98380 -31.63172 -28.78712 -26.75063 -25.47437 -23.97049 -23.53713 -22.37498 -20.93025 -20.59959 -18.77822 -18.63151 -17.62230 -17.56763 -16.57910 -16.48495 -15.77683 -15.46593 -15.19390 -14.94070 -14.65423 -14.36150 -14.28647 -14.04346 -13.62331 -13.56227 -13.15127 -13.02227 -12.89686 -12.66614 -12.56573 -12.53551 -12.32712 -12.24476 -12.10766 -11.95444 -11.67043 -11.52939 -11.49107 -11.24963 -11.09365 -10.86538 -10.46208 -9.09373 -8.15077 -6.24057 1.11780 1.42155 1.44472 1.52052 1.65893 2.43089 3.06077 3.18573 3.51349 3.71373 3.78839 4.00780 4.08413 4.17198 4.19283 4.32636 4.35286 4.36797 4.49434 4.52149 4.66587 4.68470 4.80144 4.81863 4.89592 4.92751 4.99064 5.05069 5.13532 5.13916 5.19034 5.28705 5.30982 5.45536 5.47544 5.54286 5.76925 5.83322 6.17291 6.41755 6.43135 6.69393 6.92065 7.43656 8.96748 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.003596 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.766474 B = 7784.757518 C = 8403.892074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.474 3.526 5 O -0.536 6.536 6 C -0.075 4.075 7 C -0.094 4.094 8 C 0.056 3.944 9 N -0.549 5.549 10 C 0.096 3.904 11 H 0.025 0.975 12 C -0.124 4.124 13 C 0.039 3.961 14 C -0.531 4.531 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.960 3.040 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.054 3.946 23 C -0.091 4.091 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.053 0.947 37 H -0.005 1.005 38 H -0.008 1.008 39 H 0.262 0.738 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 -14.162 -12.890 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.318 3.682 5 O -0.426 6.426 6 C -0.094 4.094 7 C -0.132 4.132 8 C -0.072 4.072 9 N -0.274 5.274 10 C -0.011 4.011 11 H 0.042 0.958 12 C -0.181 4.181 13 C 0.002 3.998 14 C -0.570 4.570 15 H 0.079 0.921 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.785 3.215 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.074 4.074 23 C -0.129 4.129 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.014 0.986 38 H 0.010 0.990 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.595 -14.733 -12.328 20.311 hybrid contribution 0.082 1.208 0.024 1.211 sum -6.513 -13.525 -12.304 19.410 Atomic orbital electron populations 1.21825 0.90470 1.04353 1.03703 1.23295 0.97097 0.79305 1.02503 1.86528 1.23979 1.33679 1.83481 1.23966 0.80621 0.92662 0.70939 1.90635 1.61108 1.44054 1.46770 1.21206 0.96808 0.89025 1.02397 1.21493 1.01091 0.94730 0.95928 1.22065 0.87707 0.96403 1.01050 1.61961 1.05911 1.21556 1.38014 1.21516 0.95088 0.87393 0.97139 0.95753 1.21686 0.94189 1.01280 1.00954 1.19024 0.94636 0.93842 0.92281 1.21566 1.30884 1.01998 1.02531 0.92072 1.25896 0.95837 1.02277 0.95623 1.70098 1.40050 1.39409 1.07728 0.85585 0.79123 0.79545 0.77295 1.19258 1.21178 1.19250 1.22187 1.01019 0.93747 0.90419 1.21431 0.91579 0.96548 1.03320 0.91105 0.88160 0.91539 0.91042 0.91673 0.85553 0.88818 0.92069 0.91713 0.94260 0.93803 0.91461 0.92809 0.98636 0.98958 0.92969 0.89383 0.94048 0.91927 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.05 0.90 6.19 71.98 0.45 1.34 16 3 O -0.36 -8.06 10.15 -51.45 -0.52 -8.58 16 4 C 0.47 11.94 7.26 71.23 0.52 12.46 16 5 O -0.54 -16.15 15.73 21.97 0.35 -15.81 16 6 C -0.08 -1.76 2.70 -11.46 -0.03 -1.79 16 7 C -0.09 -2.50 5.31 30.65 0.16 -2.34 16 8 C 0.06 1.82 5.15 86.33 0.44 2.26 16 9 N -0.55 -19.22 4.53 -871.13 -3.94 -23.16 16 10 C 0.10 3.94 2.13 44.92 0.10 4.04 16 11 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 12 C -0.12 -4.62 8.74 71.98 0.63 -3.99 16 13 C 0.04 2.06 4.22 29.85 0.13 2.19 16 14 C -0.53 -29.60 8.27 25.60 0.21 -29.39 16 15 H 0.06 3.25 7.10 -2.91 -0.02 3.23 16 16 C 0.00 0.08 5.46 84.66 0.46 0.54 16 17 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 18 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 C 0.05 1.46 5.21 86.32 0.45 1.91 16 23 C -0.09 -2.25 4.68 30.64 0.14 -2.11 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 28 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 2.53 5.86 -2.39 -0.01 2.52 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.07 2.02 6.27 -2.39 -0.01 2.01 16 36 H 0.05 2.13 6.89 -2.39 -0.02 2.11 16 37 H 0.00 -0.25 6.09 -2.39 -0.01 -0.26 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.09 2.30 5.99 -2.39 -0.01 2.29 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.79 8.04 -2.39 -0.02 1.77 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -66.63 338.67 3.55 -63.08 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.96 Total: 10.66 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 4.40 Total: -15.83 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.66 Total: -79.56 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.18 Total: -24.39 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.63 3.55 -63.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351646510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.295 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds