Wall clock time and date at job start Mon Mar 30 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45206 * 109.46803 * 2 1 4 4 C 1.34229 * 116.99642 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00342 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99834 * 180.02562 * 4 3 2 7 7 C 1.53112 * 109.52530 * 180.02562 * 6 4 3 8 8 C 1.53038 * 109.27981 * 182.44034 * 7 6 4 9 9 N 1.46847 * 109.52019 * 59.18367 * 8 7 6 10 10 C 1.46905 * 110.99586 * 174.15901 * 9 8 7 11 11 H 1.08996 * 109.46979 * 310.94405 * 10 9 8 12 12 C 1.52993 * 109.47303 * 70.94762 * 10 9 8 13 13 C 1.52999 * 109.46820 * 190.94478 * 10 9 8 14 14 C 1.50703 * 109.47462 * 63.87207 * 13 10 9 15 15 H 1.08000 * 119.99782 * 0.02562 * 14 13 10 16 16 C 1.37877 * 120.00456 * 179.97438 * 14 13 10 17 17 N 1.31511 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00077 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47227 * 59.99782 * 18 16 14 20 20 H 1.48500 * 109.47282 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46948 * 299.99832 * 18 16 14 22 22 C 1.46847 * 111.19733 * 298.25534 * 9 8 7 23 23 C 1.53040 * 109.52263 * 61.74472 * 22 9 8 24 24 H 1.08999 * 109.47333 * 60.00110 * 1 2 3 25 25 H 1.09002 * 109.46582 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47184 * 299.99252 * 1 2 3 27 27 H 1.09000 * 109.47184 * 240.00748 * 2 1 3 28 28 H 1.08999 * 109.47333 * 119.99890 * 2 1 3 29 29 H 1.09002 * 109.57685 * 300.16455 * 6 4 3 30 30 H 1.09006 * 109.50101 * 62.49990 * 7 6 4 31 31 H 1.09006 * 109.50631 * 302.38922 * 7 6 4 32 32 H 1.09002 * 109.46215 * 179.19652 * 8 7 6 33 33 H 1.08998 * 109.46458 * 299.16206 * 8 7 6 34 34 H 1.09004 * 109.46902 * 299.99868 * 12 10 9 35 35 H 1.09009 * 109.47188 * 59.99652 * 12 10 9 36 36 H 1.08991 * 109.47797 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47469 * 183.87149 * 13 10 9 38 38 H 1.09008 * 109.47348 * 303.87404 * 13 10 9 39 39 H 0.96998 * 120.00001 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.45883 * 181.75632 * 22 9 8 41 41 H 1.09000 * 109.46278 * 301.72878 * 22 9 8 42 42 H 1.09002 * 109.50259 * 60.75906 * 23 22 9 43 43 H 1.08998 * 109.49958 * 180.88001 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4498 2.8589 0.0010 8 6 6.0285 4.2742 0.0632 9 7 5.5552 4.9449 1.2808 10 6 6.1997 6.2548 1.4447 11 1 7.2774 6.1474 1.3215 12 6 5.6600 7.2241 0.3912 13 6 5.8979 6.8004 2.8418 14 6 6.5119 5.8948 3.8783 15 1 7.0627 5.0180 3.5711 16 6 6.3714 6.1861 5.2186 17 7 5.7012 7.2540 5.5926 18 14 7.1331 5.0640 6.5031 19 1 8.6030 5.0060 6.3007 20 1 6.8411 5.5941 7.8592 21 1 6.5610 3.6999 6.3705 22 6 4.0924 5.0743 1.2812 23 6 3.4559 3.6828 1.2554 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.5837 3.4725 -0.8867 30 1 5.7887 2.3668 -0.9106 31 1 5.7850 2.2901 0.8684 32 1 7.1172 4.2211 0.0776 33 1 5.7042 4.8380 -0.8115 34 1 5.8750 6.8354 -0.6042 35 1 4.5823 7.3315 0.5144 36 1 6.1379 8.1961 0.5130 37 1 6.3178 7.8014 2.9396 38 1 4.8188 6.8429 2.9901 39 1 5.6020 7.4588 6.5355 40 1 3.7749 5.6023 2.1803 41 1 3.7771 5.6343 0.4008 42 1 3.7598 3.1271 2.1425 43 1 2.3703 3.7796 1.2399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351646511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:25 Heat of formation + Delta-G solvation = -101.847075 kcal Electronic energy + Delta-G solvation = -21534.392454 eV Core-core repulsion = 18385.960875 eV Total energy + Delta-G solvation = -3148.431579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67622 -38.79055 -36.71195 -34.81628 -32.52881 -31.85802 -30.60818 -29.79535 -27.28836 -25.42920 -23.44492 -22.95042 -22.73579 -21.25457 -19.75455 -18.70807 -17.64823 -16.61882 -16.47030 -16.12090 -15.32220 -14.60124 -14.50701 -14.26715 -13.88411 -13.51539 -13.43693 -13.33083 -12.94239 -12.60862 -12.15724 -12.06202 -11.86465 -11.79394 -11.70204 -11.53041 -11.35716 -10.94537 -10.89977 -10.65508 -10.57234 -10.44305 -10.39851 -10.30625 -9.99043 -9.84035 -9.14800 -8.95356 -8.23083 -7.45903 -5.86525 -3.84008 2.23347 2.63360 3.43219 3.46655 3.51002 4.48809 4.58672 4.60720 4.72152 4.78725 4.87043 4.94851 5.06273 5.25845 5.47219 5.50268 5.50725 5.55615 5.62632 5.70204 5.75263 5.79139 5.84058 5.95642 5.98791 6.01997 6.05177 6.23171 6.37735 6.39519 6.41920 6.56695 6.61425 6.72901 7.00052 7.55204 7.69575 7.77086 7.92798 8.03668 8.14971 8.60808 9.21929 9.77731 11.25437 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.004820 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.170870 B = 5807.830712 C = 6510.953956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.469 3.531 5 O -0.510 6.510 6 C -0.078 4.078 7 C -0.098 4.098 8 C 0.055 3.945 9 N -0.511 5.511 10 C 0.087 3.913 11 H 0.070 0.930 12 C -0.184 4.184 13 C 0.031 3.969 14 C -0.490 4.490 15 H 0.060 0.940 16 C 0.051 3.949 17 N -0.905 5.905 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.058 3.942 23 C -0.106 4.106 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.257 0.743 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.078 0.922 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 -9.232 -13.767 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.312 3.688 5 O -0.397 6.397 6 C -0.097 4.097 7 C -0.136 4.136 8 C -0.074 4.074 9 N -0.235 5.235 10 C -0.021 4.021 11 H 0.088 0.912 12 C -0.243 4.243 13 C -0.006 4.006 14 C -0.528 4.528 15 H 0.078 0.922 16 C -0.148 4.148 17 N -0.546 5.546 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.070 4.070 23 C -0.144 4.144 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.985 -9.755 -13.200 18.253 hybrid contribution 0.147 -0.309 0.071 0.349 sum -7.838 -10.064 -13.129 18.306 Atomic orbital electron populations 1.21800 0.92707 1.02815 1.03594 1.22997 0.95333 0.80615 1.02455 1.86531 1.24923 1.32003 1.84042 1.23972 0.80254 0.92936 0.71651 1.90642 1.60426 1.43284 1.45369 1.21223 0.97252 0.89113 1.02130 1.21508 0.91101 0.97763 1.03244 1.22073 1.00073 0.93419 0.91810 1.62050 1.04990 1.21949 1.34509 1.21917 0.97466 0.85473 0.97243 0.91216 1.22525 1.01655 1.01027 0.99077 1.19191 0.97192 0.95691 0.88566 1.21142 1.32363 1.09031 0.90301 0.92160 1.24988 0.95861 0.95302 0.98657 1.69950 1.42387 1.26304 1.15927 0.86712 0.79681 0.81195 0.80676 1.20517 1.21698 1.20399 1.22073 0.88510 0.94873 1.01527 1.21615 1.00039 0.96831 0.95882 0.91559 0.90404 0.91313 0.91485 0.91258 0.88079 0.91451 0.89978 0.90621 0.95580 0.94191 0.92797 0.92553 0.96380 0.96308 0.93305 0.88801 0.95442 0.90294 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.56 10.16 -39.26 -0.40 -4.96 16 4 C 0.47 6.68 7.26 36.01 0.26 6.94 16 5 O -0.51 -8.47 15.72 -18.75 -0.29 -8.77 16 6 C -0.08 -1.04 2.70 -91.65 -0.25 -1.29 16 7 C -0.10 -1.40 4.68 -26.65 -0.12 -1.53 16 8 C 0.05 0.82 5.15 -3.83 -0.02 0.80 16 9 N -0.51 -9.35 4.28 -226.69 -0.97 -10.32 16 10 C 0.09 1.71 2.26 -67.71 -0.15 1.56 16 11 H 0.07 1.41 7.97 -51.93 -0.41 0.99 16 12 C -0.18 -3.04 8.43 37.15 0.31 -2.73 16 13 C 0.03 0.76 4.37 -27.88 -0.12 0.64 16 14 C -0.49 -13.60 8.81 -34.44 -0.30 -13.91 16 15 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 16 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 17 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.06 0.97 4.52 -3.83 -0.02 0.95 16 23 C -0.11 -1.55 5.31 -26.65 -0.14 -1.69 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.34 8.04 -51.93 -0.42 0.93 16 32 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 33 H 0.03 0.36 6.91 -51.93 -0.36 0.00 16 34 H 0.04 0.58 6.85 -51.93 -0.36 0.22 16 35 H 0.05 0.88 6.45 -51.92 -0.34 0.54 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.49 6.30 -51.92 -0.33 0.16 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 40 H 0.09 1.81 6.18 -51.93 -0.32 1.49 16 41 H 0.03 0.42 6.57 -51.93 -0.34 0.08 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -31.09 338.61 -8.36 -39.45 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.48 Total: -2.49 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.04 Total: -8.78 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.23 Total: -36.70 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.69 Total: -13.73 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.09 -8.36 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351646511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.395 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds