Wall clock time and date at job start Mon Mar 30 2020 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45206 * 109.46803 * 2 1 4 4 C 1.34229 * 116.99642 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00342 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99834 * 180.02562 * 4 3 2 7 7 C 1.53112 * 109.52530 * 180.02562 * 6 4 3 8 8 C 1.53038 * 109.27981 * 182.44034 * 7 6 4 9 9 N 1.46847 * 109.52019 * 59.18367 * 8 7 6 10 10 C 1.46905 * 110.99586 * 174.15901 * 9 8 7 11 11 H 1.08996 * 109.46979 * 310.94405 * 10 9 8 12 12 C 1.52993 * 109.47303 * 70.94762 * 10 9 8 13 13 C 1.52999 * 109.46820 * 190.94478 * 10 9 8 14 14 C 1.50703 * 109.47462 * 63.87207 * 13 10 9 15 15 H 1.08000 * 119.99782 * 0.02562 * 14 13 10 16 16 C 1.37877 * 120.00456 * 179.97438 * 14 13 10 17 17 N 1.31511 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00077 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47227 * 59.99782 * 18 16 14 20 20 H 1.48500 * 109.47282 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46948 * 299.99832 * 18 16 14 22 22 C 1.46847 * 111.19733 * 298.25534 * 9 8 7 23 23 C 1.53040 * 109.52263 * 61.74472 * 22 9 8 24 24 H 1.08999 * 109.47333 * 60.00110 * 1 2 3 25 25 H 1.09002 * 109.46582 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47184 * 299.99252 * 1 2 3 27 27 H 1.09000 * 109.47184 * 240.00748 * 2 1 3 28 28 H 1.08999 * 109.47333 * 119.99890 * 2 1 3 29 29 H 1.09002 * 109.57685 * 300.16455 * 6 4 3 30 30 H 1.09006 * 109.50101 * 62.49990 * 7 6 4 31 31 H 1.09006 * 109.50631 * 302.38922 * 7 6 4 32 32 H 1.09002 * 109.46215 * 179.19652 * 8 7 6 33 33 H 1.08998 * 109.46458 * 299.16206 * 8 7 6 34 34 H 1.09004 * 109.46902 * 299.99868 * 12 10 9 35 35 H 1.09009 * 109.47188 * 59.99652 * 12 10 9 36 36 H 1.08991 * 109.47797 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47469 * 183.87149 * 13 10 9 38 38 H 1.09008 * 109.47348 * 303.87404 * 13 10 9 39 39 H 0.96998 * 120.00001 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.45883 * 181.75632 * 22 9 8 41 41 H 1.09000 * 109.46278 * 301.72878 * 22 9 8 42 42 H 1.09002 * 109.50259 * 60.75906 * 23 22 9 43 43 H 1.08998 * 109.49958 * 180.88001 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4498 2.8589 0.0010 8 6 6.0285 4.2742 0.0632 9 7 5.5552 4.9449 1.2808 10 6 6.1997 6.2548 1.4447 11 1 7.2774 6.1474 1.3215 12 6 5.6600 7.2241 0.3912 13 6 5.8979 6.8004 2.8418 14 6 6.5119 5.8948 3.8783 15 1 7.0627 5.0180 3.5711 16 6 6.3714 6.1861 5.2186 17 7 5.7012 7.2540 5.5926 18 14 7.1331 5.0640 6.5031 19 1 8.6030 5.0060 6.3007 20 1 6.8411 5.5941 7.8592 21 1 6.5610 3.6999 6.3705 22 6 4.0924 5.0743 1.2812 23 6 3.4559 3.6828 1.2554 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.5837 3.4725 -0.8867 30 1 5.7887 2.3668 -0.9106 31 1 5.7850 2.2901 0.8684 32 1 7.1172 4.2211 0.0776 33 1 5.7042 4.8380 -0.8115 34 1 5.8750 6.8354 -0.6042 35 1 4.5823 7.3315 0.5144 36 1 6.1379 8.1961 0.5130 37 1 6.3178 7.8014 2.9396 38 1 4.8188 6.8429 2.9901 39 1 5.6020 7.4588 6.5355 40 1 3.7749 5.6023 2.1803 41 1 3.7771 5.6343 0.4008 42 1 3.7598 3.1271 2.1425 43 1 2.3703 3.7796 1.2399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351646511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:24 Heat of formation + Delta-G solvation = -120.120023 kcal Electronic energy + Delta-G solvation = -21535.184828 eV Core-core repulsion = 18385.960875 eV Total energy + Delta-G solvation = -3149.223953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77915 -40.10104 -37.79817 -36.28055 -34.51422 -32.70933 -31.83505 -31.25027 -29.11156 -26.63476 -25.10625 -24.10063 -23.97667 -22.43657 -21.05775 -20.10570 -18.72389 -18.31556 -17.67673 -17.51731 -16.68220 -16.50615 -15.71102 -15.51052 -15.13337 -14.83319 -14.58863 -14.46093 -14.21671 -13.75571 -13.58250 -13.55831 -13.19963 -12.94779 -12.92921 -12.79575 -12.64230 -12.53152 -12.45927 -12.31263 -12.08062 -11.77819 -11.61807 -11.51531 -11.45870 -11.23814 -11.06098 -10.85736 -10.44211 -8.82829 -8.07753 -6.11399 1.12715 1.41927 1.43945 1.51435 1.67019 2.48551 3.13320 3.29589 3.53917 3.75629 3.82511 4.00216 4.08316 4.18117 4.21418 4.34453 4.37964 4.41779 4.43952 4.55112 4.66225 4.72318 4.80289 4.82520 4.87512 4.92448 5.00442 5.05020 5.14100 5.17877 5.20795 5.26410 5.29289 5.39703 5.48115 5.55151 5.75619 5.93696 6.36936 6.52785 6.59487 6.70237 7.02630 7.54067 9.03946 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.004820 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.170870 B = 5807.830712 C = 6510.953956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.359 6.359 4 C 0.472 3.528 5 O -0.538 6.538 6 C -0.072 4.072 7 C -0.093 4.093 8 C 0.059 3.941 9 N -0.538 5.538 10 C 0.095 3.905 11 H 0.063 0.937 12 C -0.173 4.173 13 C 0.036 3.964 14 C -0.498 4.498 15 H 0.055 0.945 16 C -0.002 4.002 17 N -0.939 5.939 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.062 3.938 23 C -0.098 4.098 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.054 0.946 37 H -0.009 1.009 38 H -0.001 1.001 39 H 0.258 0.742 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -10.213 -15.563 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.316 3.684 5 O -0.428 6.428 6 C -0.091 4.091 7 C -0.131 4.131 8 C -0.069 4.069 9 N -0.262 5.262 10 C -0.013 4.013 11 H 0.081 0.919 12 C -0.232 4.232 13 C -0.001 4.001 14 C -0.537 4.537 15 H 0.073 0.927 16 C -0.198 4.198 17 N -0.581 5.581 18 Si 0.777 3.223 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.065 4.065 23 C -0.136 4.136 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.009 0.991 38 H 0.017 0.983 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.581 -10.741 -15.009 20.354 hybrid contribution 0.292 -0.034 0.625 0.691 sum -8.289 -10.775 -14.383 19.791 Atomic orbital electron populations 1.21820 0.90345 1.04349 1.03747 1.23295 0.97185 0.79376 1.02401 1.86525 1.23954 1.33597 1.83504 1.24066 0.80618 0.92827 0.70864 1.90634 1.61151 1.44192 1.46837 1.21190 0.96574 0.88859 1.02434 1.21433 0.91809 0.96958 1.02861 1.22089 1.00113 0.93603 0.91085 1.61900 1.05875 1.21284 1.37178 1.21592 0.97454 0.87136 0.95100 0.91853 1.22383 1.01469 1.00101 0.99256 1.19052 0.95347 0.94089 0.91590 1.21477 1.31875 1.09028 0.91274 0.92659 1.25772 0.96488 0.96694 1.00850 1.70071 1.43817 1.27959 1.16266 0.85725 0.79153 0.79221 0.78215 1.19598 1.21244 1.20163 1.21981 0.87797 0.95913 1.00840 1.21503 1.01024 0.95438 0.95592 0.90917 0.88195 0.91590 0.90982 0.91974 0.85003 0.89610 0.92799 0.90690 0.93075 0.91263 0.92656 0.92661 0.99060 0.98268 0.93333 0.92348 0.93015 0.93099 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.29 71.98 0.74 -1.07 16 2 C 0.05 0.96 6.19 71.98 0.45 1.40 16 3 O -0.36 -8.51 10.16 -51.41 -0.52 -9.04 16 4 C 0.47 12.72 7.26 71.24 0.52 13.23 16 5 O -0.54 -17.42 15.72 21.98 0.35 -17.08 16 6 C -0.07 -1.75 2.70 -11.46 -0.03 -1.79 16 7 C -0.09 -2.48 4.68 30.64 0.14 -2.33 16 8 C 0.06 1.64 5.15 86.33 0.44 2.08 16 9 N -0.54 -19.30 4.28 -871.12 -3.73 -23.03 16 10 C 0.10 3.73 2.26 44.91 0.10 3.84 16 11 H 0.06 2.54 7.97 -2.39 -0.02 2.52 16 12 C -0.17 -5.40 8.43 71.98 0.61 -4.79 16 13 C 0.04 1.86 4.37 29.85 0.13 1.99 16 14 C -0.50 -28.30 8.81 25.60 0.23 -28.08 16 15 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 16 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 17 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 18 Si 0.95 46.08 29.54 68.60 2.03 48.11 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 C 0.06 2.03 4.52 86.33 0.39 2.42 16 23 C -0.10 -2.76 5.31 30.65 0.16 -2.60 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.05 1.75 8.04 -2.38 -0.02 1.73 16 32 H 0.07 2.10 8.00 -2.39 -0.02 2.08 16 33 H 0.05 1.20 6.91 -2.39 -0.02 1.18 16 34 H 0.07 1.76 6.85 -2.39 -0.02 1.75 16 35 H 0.05 1.70 6.45 -2.38 -0.02 1.68 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.00 -0.05 6.30 -2.38 -0.02 -0.07 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 40 H 0.06 2.31 6.18 -2.39 -0.01 2.30 16 41 H 0.05 1.43 6.57 -2.39 -0.02 1.41 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -68.25 338.61 3.71 -64.54 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.96 Total: 9.17 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.34 Total: -15.35 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -3.45 Total: -80.35 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.18 Total: -26.11 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -68.25 3.71 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351646511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.582 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds