Wall clock time and date at job start Mon Mar 30 2020 01:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47576 * 2 1 4 4 C 1.34231 * 117.00192 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99772 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47119 * 60.00059 * 6 4 3 8 8 C 1.53001 * 109.47301 * 300.00086 * 6 4 3 9 9 C 1.53005 * 109.46973 * 179.97438 * 6 4 3 10 10 C 1.53043 * 109.44748 * 299.96899 * 9 6 4 11 11 C 1.53191 * 109.30759 * 181.37929 * 10 9 6 12 12 N 1.46929 * 108.77832 * 305.35884 * 11 10 9 13 13 C 1.36933 * 120.63209 * 233.63771 * 12 11 10 14 14 H 1.07992 * 120.00380 * 27.66123 * 13 12 11 15 15 C 1.38815 * 119.99439 * 207.66718 * 13 12 11 16 16 N 1.31617 * 120.00272 * 17.35761 * 15 13 12 17 17 Si 1.86807 * 119.99654 * 197.36302 * 15 13 12 18 18 H 1.48498 * 109.47366 * 89.99707 * 17 15 13 19 19 H 1.48496 * 109.46821 * 210.00060 * 17 15 13 20 20 H 1.48500 * 109.46857 * 329.99696 * 17 15 13 21 21 C 1.46924 * 118.73417 * 53.61200 * 12 11 10 22 22 C 1.53036 * 109.45786 * 60.02923 * 9 6 4 23 23 H 1.08997 * 109.47606 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46870 * 300.00456 * 1 2 3 25 25 H 1.09005 * 109.46875 * 60.00029 * 1 2 3 26 26 H 1.09003 * 109.46975 * 239.99728 * 2 1 3 27 27 H 1.09000 * 109.47241 * 120.00266 * 2 1 3 28 28 H 1.08995 * 109.46930 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47110 * 300.00026 * 7 6 4 30 30 H 1.09006 * 109.46888 * 60.00017 * 7 6 4 31 31 H 1.09007 * 109.46841 * 299.99993 * 8 6 4 32 32 H 1.09001 * 109.47039 * 59.99906 * 8 6 4 33 33 H 1.08995 * 109.47018 * 180.02562 * 8 6 4 34 34 H 1.08998 * 109.46286 * 180.02562 * 9 6 4 35 35 H 1.08997 * 109.49581 * 301.33017 * 10 9 6 36 36 H 1.08999 * 109.49581 * 61.42681 * 10 9 6 37 37 H 1.09001 * 109.58110 * 185.57945 * 11 10 9 38 38 H 1.08991 * 109.59161 * 65.15315 * 11 10 9 39 39 H 0.96998 * 119.99469 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.58729 * 186.60386 * 21 12 11 41 41 H 1.09008 * 109.70558 * 66.24793 * 21 12 11 42 42 H 1.09001 * 109.49896 * 298.58025 * 22 9 6 43 43 H 1.09003 * 109.50426 * 58.64216 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4487 3.6850 1.2486 8 6 3.4499 3.6835 -1.2499 9 6 5.4488 2.8572 0.0014 10 6 5.9188 2.1115 1.2526 11 6 7.4498 2.0632 1.2682 12 7 7.9175 1.4766 0.0049 13 6 8.7701 0.4051 0.0067 14 1 8.7657 -0.2872 0.8354 15 6 9.6403 0.2090 -1.0569 16 7 9.8998 1.1978 -1.8859 17 14 10.4429 -1.4585 -1.3118 18 1 9.5811 -2.2944 -2.1857 19 1 11.7697 -1.2763 -1.9532 20 1 10.6160 -2.1303 0.0012 21 6 7.4524 2.0612 -1.2602 22 6 5.9212 2.1097 -1.2476 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8657 4.6920 1.2484 29 1 2.3602 3.7420 1.2480 30 1 3.7842 3.1533 2.1390 31 1 3.7863 3.1508 -2.1395 32 1 2.3614 3.7406 -1.2504 33 1 3.8669 4.6906 -1.2505 34 1 5.8653 3.8644 0.0015 35 1 5.5620 2.6317 2.1415 36 1 5.5228 1.0961 1.2411 37 1 7.7874 1.4493 2.1032 38 1 7.8463 3.0733 1.3710 39 1 10.5082 1.0608 -2.6289 40 1 7.7916 1.4460 -2.0936 41 1 7.8490 3.0710 -1.3663 42 1 5.5252 1.0942 -1.2355 43 1 5.5658 2.6280 -2.1382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352185389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:47 Heat of formation + Delta-G solvation = -76.680542 kcal Electronic energy + Delta-G solvation = -22404.186267 eV Core-core repulsion = 19256.845991 eV Total energy + Delta-G solvation = -3147.340276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82585 -38.12192 -36.12651 -35.17632 -32.29312 -31.56204 -30.11617 -29.37932 -27.17551 -25.17744 -24.40445 -22.72297 -21.81611 -21.75025 -19.45709 -19.19790 -17.07837 -16.76352 -16.42084 -15.43998 -14.89129 -14.39946 -14.19283 -13.72946 -13.55505 -13.48504 -13.17313 -13.02357 -12.85271 -12.39284 -12.24263 -12.01662 -12.01123 -11.88787 -11.62490 -11.45554 -11.28008 -10.89850 -10.84542 -10.59499 -10.54003 -10.46687 -10.15471 -9.88400 -9.73435 -9.41097 -9.26660 -9.13712 -8.32454 -6.51458 -5.65998 -3.06212 2.49660 2.80504 3.46018 3.52190 3.53813 4.60935 4.65441 4.83576 4.88666 4.93219 4.96268 5.18115 5.22472 5.46827 5.56290 5.58684 5.63810 5.65720 5.77168 5.79666 5.83005 5.89277 5.90828 5.98251 6.12591 6.18325 6.24995 6.42860 6.49926 6.57003 6.71014 6.78557 6.94703 6.99296 7.06331 7.26833 7.58694 7.81458 7.92161 8.10377 8.59012 9.35476 9.99908 10.57042 11.42504 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.005519 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.599818 B = 5072.282242 C = 5624.791054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.363 6.363 4 C 0.463 3.537 5 O -0.477 6.477 6 C -0.049 4.049 7 C -0.141 4.141 8 C -0.142 4.142 9 C -0.056 4.056 10 C -0.143 4.143 11 C 0.150 3.850 12 N -0.589 5.589 13 C -0.243 4.243 14 H 0.063 0.937 15 C -0.001 4.001 16 N -0.905 5.905 17 Si 0.900 3.100 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.175 3.825 22 C -0.150 4.150 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.251 0.749 40 H 0.084 0.916 41 H 0.013 0.987 42 H 0.078 0.922 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.352 4.082 3.474 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.281 6.281 4 C 0.305 3.695 5 O -0.362 6.362 6 C -0.050 4.050 7 C -0.198 4.198 8 C -0.199 4.199 9 C -0.075 4.075 10 C -0.182 4.182 11 C 0.023 3.977 12 N -0.312 5.312 13 C -0.373 4.373 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.551 5.551 17 Si 0.730 3.270 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.205 1.205 21 C 0.049 3.951 22 C -0.189 4.189 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.031 0.969 42 H 0.097 0.903 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.010 3.742 3.347 18.697 hybrid contribution 0.467 -1.010 -0.233 1.136 sum -17.543 2.733 3.115 18.026 Atomic orbital electron populations 1.21781 0.92993 1.02693 1.03246 1.22949 0.94996 0.80959 1.02577 1.86495 1.25376 1.31694 1.84539 1.23847 0.79999 0.92935 0.72680 1.90670 1.59320 1.43023 1.43190 1.20727 0.97608 0.88478 0.98173 1.21904 1.01302 1.00483 0.96146 1.21901 1.01222 1.00533 0.96212 1.20997 0.88671 0.99864 0.97957 1.22385 0.99318 1.01510 0.94984 1.20836 0.91037 0.95798 0.90017 1.43987 1.52378 1.35267 0.99541 1.19203 1.11776 1.00318 1.06002 0.91913 1.24985 0.97394 0.97387 1.00095 1.70043 1.37631 1.29307 1.18095 0.86314 0.78326 0.84391 0.77928 1.21594 1.21880 1.20522 1.20703 0.87448 0.96651 0.90274 1.22552 1.01068 1.00953 0.94354 0.90513 0.91669 0.91644 0.91383 0.91438 0.91162 0.91918 0.91776 0.91606 0.91941 0.91137 0.90913 0.93712 0.90028 0.93188 0.96936 0.93855 0.89748 0.96931 0.90339 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.36 -4.97 10.02 -39.26 -0.39 -5.36 16 4 C 0.46 7.38 5.98 36.00 0.22 7.60 16 5 O -0.48 -9.30 11.11 -18.75 -0.21 -9.51 16 6 C -0.05 -0.69 0.53 -155.66 -0.08 -0.77 16 7 C -0.14 -1.64 8.05 37.16 0.30 -1.34 16 8 C -0.14 -1.72 8.06 37.16 0.30 -1.42 16 9 C -0.06 -0.99 1.48 -90.58 -0.13 -1.12 16 10 C -0.14 -2.72 4.72 -26.61 -0.13 -2.85 16 11 C 0.15 3.37 6.52 -3.71 -0.02 3.35 16 12 N -0.59 -15.74 2.99 -172.32 -0.52 -16.25 16 13 C -0.24 -7.08 9.59 -15.06 -0.14 -7.23 16 14 H 0.06 1.81 7.89 -52.49 -0.41 1.40 16 15 C 0.00 -0.02 4.91 -17.43 -0.09 -0.11 16 16 N -0.91 -27.34 11.19 55.49 0.62 -26.72 16 17 Si 0.90 22.76 29.59 -169.99 -5.03 17.73 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.18 4.43 5.31 -3.71 -0.02 4.41 16 22 C -0.15 -3.11 4.73 -26.61 -0.13 -3.23 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.65 8.11 -51.93 -0.42 0.22 16 30 H 0.06 0.78 6.39 -51.93 -0.33 0.44 16 31 H 0.06 0.86 6.40 -51.92 -0.33 0.53 16 32 H 0.06 0.67 8.11 -51.93 -0.42 0.24 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.72 6.36 -51.93 -0.33 0.39 16 36 H 0.08 1.73 5.56 -51.93 -0.29 1.45 16 37 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.08 2.40 6.03 -51.93 -0.31 2.09 16 41 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.08 1.80 5.55 -51.93 -0.29 1.51 16 43 H 0.04 0.80 6.36 -51.93 -0.33 0.47 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -32.42 326.99 -7.16 -39.58 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.25 Total: -1.76 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 0.68 Total: -2.63 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.10 Total: -42.98 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.60 Total: -14.87 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.42 -7.16 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352185389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.102 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds