Wall clock time and date at job start Mon Mar 30 2020 01:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47576 * 2 1 4 4 C 1.34231 * 117.00192 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99772 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47119 * 60.00059 * 6 4 3 8 8 C 1.53001 * 109.47301 * 300.00086 * 6 4 3 9 9 C 1.53005 * 109.46973 * 179.97438 * 6 4 3 10 10 C 1.53043 * 109.44748 * 299.96899 * 9 6 4 11 11 C 1.53191 * 109.30759 * 181.37929 * 10 9 6 12 12 N 1.46929 * 108.77832 * 305.35884 * 11 10 9 13 13 C 1.36933 * 120.63209 * 233.63771 * 12 11 10 14 14 H 1.07992 * 120.00380 * 27.66123 * 13 12 11 15 15 C 1.38815 * 119.99439 * 207.66718 * 13 12 11 16 16 N 1.31617 * 120.00272 * 17.35761 * 15 13 12 17 17 Si 1.86807 * 119.99654 * 197.36302 * 15 13 12 18 18 H 1.48498 * 109.47366 * 89.99707 * 17 15 13 19 19 H 1.48496 * 109.46821 * 210.00060 * 17 15 13 20 20 H 1.48500 * 109.46857 * 329.99696 * 17 15 13 21 21 C 1.46924 * 118.73417 * 53.61200 * 12 11 10 22 22 C 1.53036 * 109.45786 * 60.02923 * 9 6 4 23 23 H 1.08997 * 109.47606 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46870 * 300.00456 * 1 2 3 25 25 H 1.09005 * 109.46875 * 60.00029 * 1 2 3 26 26 H 1.09003 * 109.46975 * 239.99728 * 2 1 3 27 27 H 1.09000 * 109.47241 * 120.00266 * 2 1 3 28 28 H 1.08995 * 109.46930 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47110 * 300.00026 * 7 6 4 30 30 H 1.09006 * 109.46888 * 60.00017 * 7 6 4 31 31 H 1.09007 * 109.46841 * 299.99993 * 8 6 4 32 32 H 1.09001 * 109.47039 * 59.99906 * 8 6 4 33 33 H 1.08995 * 109.47018 * 180.02562 * 8 6 4 34 34 H 1.08998 * 109.46286 * 180.02562 * 9 6 4 35 35 H 1.08997 * 109.49581 * 301.33017 * 10 9 6 36 36 H 1.08999 * 109.49581 * 61.42681 * 10 9 6 37 37 H 1.09001 * 109.58110 * 185.57945 * 11 10 9 38 38 H 1.08991 * 109.59161 * 65.15315 * 11 10 9 39 39 H 0.96998 * 119.99469 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.58729 * 186.60386 * 21 12 11 41 41 H 1.09008 * 109.70558 * 66.24793 * 21 12 11 42 42 H 1.09001 * 109.49896 * 298.58025 * 22 9 6 43 43 H 1.09003 * 109.50426 * 58.64216 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4487 3.6850 1.2486 8 6 3.4499 3.6835 -1.2499 9 6 5.4488 2.8572 0.0014 10 6 5.9188 2.1115 1.2526 11 6 7.4498 2.0632 1.2682 12 7 7.9175 1.4766 0.0049 13 6 8.7701 0.4051 0.0067 14 1 8.7657 -0.2872 0.8354 15 6 9.6403 0.2090 -1.0569 16 7 9.8998 1.1978 -1.8859 17 14 10.4429 -1.4585 -1.3118 18 1 9.5811 -2.2944 -2.1857 19 1 11.7697 -1.2763 -1.9532 20 1 10.6160 -2.1303 0.0012 21 6 7.4524 2.0612 -1.2602 22 6 5.9212 2.1097 -1.2476 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8657 4.6920 1.2484 29 1 2.3602 3.7420 1.2480 30 1 3.7842 3.1533 2.1390 31 1 3.7863 3.1508 -2.1395 32 1 2.3614 3.7406 -1.2504 33 1 3.8669 4.6906 -1.2505 34 1 5.8653 3.8644 0.0015 35 1 5.5620 2.6317 2.1415 36 1 5.5228 1.0961 1.2411 37 1 7.7874 1.4493 2.1032 38 1 7.8463 3.0733 1.3710 39 1 10.5082 1.0608 -2.6289 40 1 7.7916 1.4460 -2.0936 41 1 7.8490 3.0710 -1.3663 42 1 5.5252 1.0942 -1.2355 43 1 5.5658 2.6280 -2.1382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352185389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:47 Heat of formation + Delta-G solvation = -95.404818 kcal Electronic energy + Delta-G solvation = -22404.998212 eV Core-core repulsion = 19256.845991 eV Total energy + Delta-G solvation = -3148.152222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07270 -39.53032 -37.53398 -36.67148 -34.13276 -32.54544 -31.81623 -31.17037 -28.20710 -27.08423 -25.48012 -24.16916 -23.50675 -23.09853 -20.99360 -20.64917 -18.80371 -18.23543 -17.52929 -16.97228 -16.63581 -15.91306 -15.49975 -15.07302 -15.02018 -14.97348 -14.70657 -14.61615 -14.08335 -13.52438 -13.46911 -13.24727 -13.13990 -13.07781 -12.96434 -12.79023 -12.69661 -12.56178 -12.47433 -12.17245 -12.10254 -12.00778 -11.73283 -11.67293 -11.31261 -11.02112 -10.89391 -10.72425 -10.47860 -8.65470 -7.87211 -5.30969 1.28625 1.41776 1.44437 1.52949 1.74207 2.49791 3.25383 3.52100 3.73825 3.80971 3.84691 4.00982 4.09775 4.14679 4.22245 4.36201 4.44686 4.59855 4.63886 4.75770 4.80408 4.82466 4.85669 4.91817 4.93813 4.97840 5.02911 5.07886 5.11633 5.16098 5.20164 5.32185 5.39915 5.43071 5.48513 5.53794 5.60239 5.69703 5.92978 6.39555 6.89320 7.15610 7.88847 8.39958 9.18724 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.005519 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.599818 B = 5072.282242 C = 5624.791054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.463 3.537 5 O -0.521 6.521 6 C -0.045 4.045 7 C -0.137 4.137 8 C -0.139 4.139 9 C -0.052 4.052 10 C -0.131 4.131 11 C 0.143 3.857 12 N -0.609 5.609 13 C -0.261 4.261 14 H 0.058 0.942 15 C -0.051 4.051 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.270 1.270 21 C 0.181 3.819 22 C -0.137 4.137 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.018 0.982 39 H 0.250 0.750 40 H 0.045 0.955 41 H -0.002 1.002 42 H 0.055 0.945 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.584 5.041 4.220 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.307 3.693 5 O -0.410 6.410 6 C -0.046 4.046 7 C -0.194 4.194 8 C -0.196 4.196 9 C -0.070 4.070 10 C -0.170 4.170 11 C 0.018 3.982 12 N -0.333 5.333 13 C -0.392 4.392 14 H 0.076 0.924 15 C -0.246 4.246 16 N -0.580 5.580 17 Si 0.793 3.207 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.194 1.194 21 C 0.056 3.944 22 C -0.175 4.175 23 H 0.114 0.886 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.016 0.984 42 H 0.073 0.927 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.284 4.719 4.117 21.228 hybrid contribution 1.130 -1.321 -0.443 1.794 sum -19.154 3.397 3.674 19.797 Atomic orbital electron populations 1.21786 0.89901 1.04212 1.03904 1.23214 0.97362 0.79890 1.01832 1.86489 1.24060 1.32884 1.83887 1.24272 0.80424 0.93196 0.71397 1.90672 1.60392 1.44526 1.45372 1.20705 0.94778 0.88184 1.00915 1.21920 1.02623 1.00882 0.93979 1.21922 1.02626 1.00891 0.94170 1.20914 0.91536 0.99393 0.95204 1.22223 0.96210 1.01113 0.97431 1.21020 0.93602 0.95471 0.88095 1.44253 1.52475 1.35280 1.01249 1.19481 1.12216 1.01307 1.06154 0.92444 1.25733 0.98274 1.00682 0.99915 1.70185 1.38315 1.31057 1.18464 0.85308 0.77219 0.80192 0.78027 1.21598 1.21522 1.19428 1.20519 0.90532 0.94630 0.88744 1.22323 0.97223 1.00641 0.97342 0.88594 0.90845 0.91070 0.92443 0.92063 0.89108 0.90056 0.92375 0.93137 0.89929 0.89173 0.89680 0.90203 0.92285 0.93756 0.96398 0.94138 0.93672 0.98391 0.92672 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.05 1.12 6.19 71.98 0.45 1.57 16 3 O -0.36 -9.09 10.02 -51.43 -0.52 -9.61 16 4 C 0.46 14.20 5.98 71.24 0.43 14.62 16 5 O -0.52 -20.55 11.11 21.95 0.24 -20.31 16 6 C -0.04 -1.16 0.53 -52.93 -0.03 -1.18 16 7 C -0.14 -2.63 8.05 71.98 0.58 -2.05 16 8 C -0.14 -2.93 8.06 71.98 0.58 -2.35 16 9 C -0.05 -1.74 1.48 -10.77 -0.02 -1.76 16 10 C -0.13 -4.86 4.72 30.67 0.14 -4.72 16 11 C 0.14 6.50 6.52 86.36 0.56 7.06 16 12 N -0.61 -33.45 2.99 -699.10 -2.09 -35.54 16 13 C -0.26 -15.66 9.59 84.03 0.81 -14.86 16 14 H 0.06 3.42 7.89 -2.91 -0.02 3.39 16 15 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 16 N -0.93 -58.12 11.19 21.65 0.24 -57.88 16 17 Si 0.96 47.85 29.59 68.60 2.03 49.88 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 20 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 21 C 0.18 9.49 5.31 86.36 0.46 9.95 16 22 C -0.14 -5.68 4.73 30.67 0.14 -5.54 16 23 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 30 H 0.06 1.19 6.39 -2.38 -0.02 1.18 16 31 H 0.05 1.22 6.40 -2.38 -0.02 1.20 16 32 H 0.08 1.43 8.11 -2.39 -0.02 1.41 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.08 2.39 6.36 -2.39 -0.02 2.38 16 36 H 0.06 2.51 5.56 -2.39 -0.01 2.50 16 37 H 0.04 2.00 7.93 -2.39 -0.02 1.98 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.04 2.69 6.03 -2.39 -0.01 2.67 16 41 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 42 H 0.05 2.59 5.55 -2.39 -0.01 2.58 16 43 H 0.06 2.35 6.36 -2.39 -0.02 2.33 16 Total: -1.00 -72.86 326.99 6.14 -66.72 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.97 Total: 9.82 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.26 Total: -3.08 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -1.85 Total: -93.43 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.27 Total: -29.92 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -72.86 6.14 -66.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352185389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.690 kcal (2) G-P(sol) polarization free energy of solvation -72.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds