Wall clock time and date at job start Mon Mar 30 2020 01:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 C 1.53010 * 109.46632 * 60.27590 * 6 4 3 8 8 C 1.53004 * 109.47380 * 300.28073 * 6 4 3 9 9 C 1.52996 * 109.46913 * 299.99818 * 8 6 4 10 10 C 1.53004 * 109.46899 * 299.99650 * 9 8 6 11 11 N 1.46896 * 109.47232 * 179.97438 * 10 9 8 12 12 C 1.46902 * 110.99843 * 84.99905 * 11 10 9 13 13 C 1.50705 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99849 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99683 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00372 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99534 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47351 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47057 * 120.00602 * 17 15 13 20 20 H 1.48508 * 109.47158 * 239.99922 * 17 15 13 21 21 C 1.53004 * 109.47053 * 60.00436 * 10 9 8 22 22 C 1.52996 * 109.47298 * 180.27351 * 6 4 3 23 23 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 24 24 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 25 25 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 27 27 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 28 28 H 1.09000 * 109.46764 * 60.00436 * 7 6 4 29 29 H 1.09005 * 109.46732 * 180.02562 * 7 6 4 30 30 H 1.08990 * 109.47121 * 300.00016 * 7 6 4 31 31 H 1.08998 * 109.46756 * 59.99337 * 8 6 4 32 32 H 1.08996 * 109.47135 * 179.97438 * 8 6 4 33 33 H 1.08995 * 109.47223 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47179 * 59.99522 * 9 8 6 35 35 H 1.08991 * 109.47547 * 300.00481 * 10 9 8 36 36 H 1.00902 * 111.00719 * 208.95763 * 11 10 9 37 37 H 1.08991 * 109.47529 * 300.00186 * 12 11 10 38 38 H 1.08996 * 109.46876 * 60.00811 * 12 11 10 39 39 H 0.96995 * 120.00103 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47212 * 180.02562 * 21 10 9 41 41 H 1.08996 * 109.47588 * 59.99783 * 21 10 9 42 42 H 1.09005 * 109.47129 * 180.02562 * 22 6 4 43 43 H 1.08994 * 109.47515 * 300.00215 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 6 3.4532 3.6883 1.2428 8 6 3.4448 3.6806 -1.2558 9 6 3.9121 2.9297 -2.5042 10 6 5.4400 2.8497 -2.5092 11 7 5.8887 2.1283 -3.7076 12 6 5.9953 3.0348 -4.8586 13 6 6.4576 2.2609 -6.0663 14 1 6.6524 1.2016 -5.9868 15 6 6.6320 2.9054 -7.2727 16 7 6.3953 4.1954 -7.3694 17 14 7.2044 1.9460 -8.7698 18 1 7.3999 0.5212 -8.3997 19 1 6.1810 2.0437 -9.8414 20 1 8.4881 2.5106 -9.2585 21 6 5.9159 2.1066 -1.2593 22 6 5.4485 2.8574 -0.0107 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7923 3.1589 2.1332 29 1 3.8695 4.6957 1.2380 30 1 2.3648 3.7453 1.2462 31 1 2.3563 3.7375 -1.2522 32 1 3.8611 4.6879 -1.2601 33 1 3.5735 3.4593 -3.3947 34 1 3.4955 1.9225 -2.4997 35 1 5.8566 3.8569 -2.5137 36 1 6.7633 1.6545 -3.5382 37 1 5.0212 3.4793 -5.0625 38 1 6.7146 3.8226 -4.6353 39 1 6.5184 4.6488 -8.2180 40 1 7.0044 2.0500 -1.2625 41 1 5.4993 1.0994 -1.2547 42 1 5.8651 3.8647 -0.0148 43 1 5.7875 2.3281 0.8798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355128753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:11 Heat of formation + Delta-G solvation = -112.571856 kcal Electronic energy + Delta-G solvation = -21671.374370 eV Core-core repulsion = 18522.477730 eV Total energy + Delta-G solvation = -3148.896640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05461 -38.37418 -36.40430 -35.04034 -32.74126 -31.79291 -30.57396 -30.55358 -26.84761 -25.04424 -24.18910 -22.72592 -22.47023 -21.34901 -20.09721 -19.51525 -17.20817 -16.68597 -16.47282 -15.78008 -14.90969 -14.63941 -14.55936 -14.31233 -13.77982 -13.75655 -13.58259 -12.96078 -12.80980 -12.61807 -12.26923 -12.22048 -12.05701 -11.98729 -11.90159 -11.65170 -11.41987 -11.19787 -10.87584 -10.85143 -10.71523 -10.54238 -10.45095 -10.29822 -9.91896 -9.74609 -9.55297 -9.07309 -8.44955 -7.20848 -6.00051 -4.01365 2.30902 2.67002 3.32961 3.40044 3.45866 4.45214 4.46427 4.61649 4.70265 4.80659 4.85787 5.01974 5.14181 5.19431 5.30859 5.35854 5.41804 5.53096 5.58321 5.62567 5.63075 5.68324 5.73543 5.77503 5.80493 5.93330 5.99776 6.14094 6.16296 6.26996 6.42639 6.51416 6.54217 6.74552 6.89217 7.33768 7.48104 7.84356 7.86452 8.18887 8.48924 8.69443 9.08982 9.63544 11.11157 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.004213 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.626372 B = 6644.642225 C = 7137.719246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.476 3.524 5 O -0.500 6.500 6 C -0.049 4.049 7 C -0.141 4.141 8 C -0.107 4.107 9 C -0.109 4.109 10 C 0.087 3.913 11 N -0.687 5.687 12 C 0.194 3.806 13 C -0.512 4.512 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.135 4.135 22 C -0.094 4.094 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.329 0.671 37 H 0.027 0.973 38 H -0.015 1.015 39 H 0.260 0.740 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 -2.312 18.747 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.319 3.681 5 O -0.387 6.387 6 C -0.050 4.050 7 C -0.198 4.198 8 C -0.145 4.145 9 C -0.147 4.147 10 C -0.023 4.023 11 N -0.318 5.318 12 C 0.068 3.932 13 C -0.551 4.551 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.173 4.173 22 C -0.132 4.132 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.146 0.854 37 H 0.046 0.954 38 H 0.003 0.997 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.873 -2.706 18.435 21.087 hybrid contribution 1.133 -0.067 -0.750 1.360 sum -8.740 -2.773 17.685 19.921 Atomic orbital electron populations 1.21793 0.92783 1.02822 1.03450 1.22997 0.95249 0.80600 1.02556 1.86493 1.24844 1.31989 1.84067 1.23645 0.80312 0.92520 0.71671 1.90602 1.60043 1.43167 1.44846 1.20648 0.96787 0.89004 0.98564 1.21864 1.02196 1.00479 0.95283 1.21675 1.01207 0.99260 0.92329 1.21557 0.96309 1.00167 0.96684 1.21441 0.94701 0.95693 0.90472 1.60634 1.35560 1.31796 1.03780 1.19587 0.96085 0.90523 0.87035 1.21262 1.44208 0.95609 0.93990 0.91967 1.24985 0.95716 0.94906 0.98990 1.69972 1.49682 1.08593 1.25606 0.86448 0.78186 0.80182 0.82640 1.19667 1.21019 1.21118 1.21998 1.00477 1.01662 0.93126 1.21461 0.91102 1.01323 0.99320 0.91697 0.91324 0.90408 0.91061 0.91556 0.92320 0.90924 0.91320 0.90825 0.90457 0.91057 0.92232 0.94853 0.85377 0.95445 0.99741 0.93039 0.92254 0.88963 0.90723 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.80 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.58 10.02 -39.24 -0.39 -4.97 16 4 C 0.48 6.73 5.04 36.00 0.18 6.92 16 5 O -0.50 -8.29 13.41 -18.76 -0.25 -8.54 16 6 C -0.05 -0.60 0.72 -155.66 -0.11 -0.71 16 7 C -0.14 -1.30 8.41 37.16 0.31 -0.99 16 8 C -0.11 -1.39 4.67 -26.73 -0.12 -1.52 16 9 C -0.11 -1.87 5.21 -26.73 -0.14 -2.01 16 10 C 0.09 1.62 2.49 -67.71 -0.17 1.45 16 11 N -0.69 -15.46 6.30 -107.99 -0.68 -16.14 16 12 C 0.19 5.23 5.24 -4.97 -0.03 5.21 16 13 C -0.51 -14.90 9.32 -34.44 -0.32 -15.22 16 14 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 17 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.14 -2.16 4.90 -26.73 -0.13 -2.29 16 22 C -0.09 -1.21 4.37 -26.73 -0.12 -1.33 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 31 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.34 7.45 -51.93 -0.39 0.95 16 34 H 0.06 1.09 7.22 -51.93 -0.37 0.72 16 35 H 0.03 0.64 7.80 -51.93 -0.41 0.24 16 36 H 0.33 7.18 8.34 -39.29 -0.33 6.86 16 37 H 0.03 0.79 7.43 -51.93 -0.39 0.40 16 38 H -0.02 -0.43 8.06 -51.93 -0.42 -0.85 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 41 H 0.09 1.65 5.52 -51.93 -0.29 1.37 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -32.11 339.82 -8.24 -40.35 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.62 Total: 2.52 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -0.13 Total: -8.91 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.06 Total: -42.65 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.64 Total: -13.51 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.11 -8.24 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355128753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.221 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds