Wall clock time and date at job start Mon Mar 30 2020 01:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 C 1.53010 * 109.46632 * 60.27590 * 6 4 3 8 8 C 1.53004 * 109.47380 * 300.28073 * 6 4 3 9 9 C 1.52996 * 109.46913 * 299.99818 * 8 6 4 10 10 C 1.53004 * 109.46899 * 299.99650 * 9 8 6 11 11 N 1.46896 * 109.47232 * 179.97438 * 10 9 8 12 12 C 1.46902 * 110.99843 * 84.99905 * 11 10 9 13 13 C 1.50705 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99849 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99683 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00372 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99534 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47351 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47057 * 120.00602 * 17 15 13 20 20 H 1.48508 * 109.47158 * 239.99922 * 17 15 13 21 21 C 1.53004 * 109.47053 * 60.00436 * 10 9 8 22 22 C 1.52996 * 109.47298 * 180.27351 * 6 4 3 23 23 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 24 24 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 25 25 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 27 27 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 28 28 H 1.09000 * 109.46764 * 60.00436 * 7 6 4 29 29 H 1.09005 * 109.46732 * 180.02562 * 7 6 4 30 30 H 1.08990 * 109.47121 * 300.00016 * 7 6 4 31 31 H 1.08998 * 109.46756 * 59.99337 * 8 6 4 32 32 H 1.08996 * 109.47135 * 179.97438 * 8 6 4 33 33 H 1.08995 * 109.47223 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47179 * 59.99522 * 9 8 6 35 35 H 1.08991 * 109.47547 * 300.00481 * 10 9 8 36 36 H 1.00902 * 111.00719 * 208.95763 * 11 10 9 37 37 H 1.08991 * 109.47529 * 300.00186 * 12 11 10 38 38 H 1.08996 * 109.46876 * 60.00811 * 12 11 10 39 39 H 0.96995 * 120.00103 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47212 * 180.02562 * 21 10 9 41 41 H 1.08996 * 109.47588 * 59.99783 * 21 10 9 42 42 H 1.09005 * 109.47129 * 180.02562 * 22 6 4 43 43 H 1.08994 * 109.47515 * 300.00215 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 6 3.4532 3.6883 1.2428 8 6 3.4448 3.6806 -1.2558 9 6 3.9121 2.9297 -2.5042 10 6 5.4400 2.8497 -2.5092 11 7 5.8887 2.1283 -3.7076 12 6 5.9953 3.0348 -4.8586 13 6 6.4576 2.2609 -6.0663 14 1 6.6524 1.2016 -5.9868 15 6 6.6320 2.9054 -7.2727 16 7 6.3953 4.1954 -7.3694 17 14 7.2044 1.9460 -8.7698 18 1 7.3999 0.5212 -8.3997 19 1 6.1810 2.0437 -9.8414 20 1 8.4881 2.5106 -9.2585 21 6 5.9159 2.1066 -1.2593 22 6 5.4485 2.8574 -0.0107 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7923 3.1589 2.1332 29 1 3.8695 4.6957 1.2380 30 1 2.3648 3.7453 1.2462 31 1 2.3563 3.7375 -1.2522 32 1 3.8611 4.6879 -1.2601 33 1 3.5735 3.4593 -3.3947 34 1 3.4955 1.9225 -2.4997 35 1 5.8566 3.8569 -2.5137 36 1 6.7633 1.6545 -3.5382 37 1 5.0212 3.4793 -5.0625 38 1 6.7146 3.8226 -4.6353 39 1 6.5184 4.6488 -8.2180 40 1 7.0044 2.0500 -1.2625 41 1 5.4993 1.0994 -1.2547 42 1 5.8651 3.8647 -0.0148 43 1 5.7875 2.3281 0.8798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355128753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:11 Heat of formation + Delta-G solvation = -132.620874 kcal Electronic energy + Delta-G solvation = -21672.243760 eV Core-core repulsion = 18522.477730 eV Total energy + Delta-G solvation = -3149.766031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14903 -39.57896 -37.58479 -36.60282 -34.72932 -32.74432 -32.01547 -31.75679 -28.63381 -26.28930 -25.36419 -24.14008 -23.54100 -23.00159 -21.51008 -20.64725 -18.62313 -18.27938 -17.67920 -16.99276 -16.65920 -16.41142 -15.83050 -15.39123 -15.25956 -14.87981 -14.73604 -14.40238 -13.96648 -13.76683 -13.64063 -13.49951 -13.20363 -13.18516 -13.02564 -12.90410 -12.70920 -12.58617 -12.48342 -12.37226 -12.11982 -12.01272 -11.84267 -11.51381 -11.46134 -11.15292 -11.00599 -10.88126 -10.67091 -9.11520 -8.24315 -6.35462 1.22683 1.38982 1.39691 1.53915 1.72412 2.38529 3.08581 3.40715 3.49752 3.59959 3.86142 3.99188 4.01898 4.09732 4.11024 4.22582 4.34962 4.41123 4.42246 4.54168 4.74877 4.77483 4.83931 4.86872 4.90064 4.93328 5.00270 5.06721 5.06790 5.14242 5.20818 5.21178 5.26175 5.31912 5.33621 5.38208 5.59432 5.67695 6.03170 6.47560 6.72973 6.79560 6.88026 7.35591 8.87496 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.004213 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.626372 B = 6644.642225 C = 7137.719246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.471 3.529 5 O -0.531 6.531 6 C -0.047 4.047 7 C -0.135 4.135 8 C -0.099 4.099 9 C -0.104 4.104 10 C 0.085 3.915 11 N -0.691 5.691 12 C 0.213 3.787 13 C -0.538 4.538 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.275 1.275 21 C -0.127 4.127 22 C -0.091 4.091 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.029 0.971 36 H 0.332 0.668 37 H 0.001 0.999 38 H -0.040 1.040 39 H 0.266 0.734 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 -2.228 19.862 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.316 3.684 5 O -0.420 6.420 6 C -0.048 4.048 7 C -0.192 4.192 8 C -0.136 4.136 9 C -0.143 4.143 10 C -0.025 4.025 11 N -0.322 5.322 12 C 0.085 3.915 13 C -0.577 4.577 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.797 3.203 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.200 1.200 21 C -0.165 4.165 22 C -0.129 4.129 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.149 0.851 37 H 0.019 0.981 38 H -0.022 1.022 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.335 -2.621 19.574 22.290 hybrid contribution 1.235 -0.121 -1.087 1.650 sum -9.100 -2.742 18.487 20.787 Atomic orbital electron populations 1.21803 0.90296 1.04264 1.03746 1.23233 0.97211 0.79692 1.02045 1.86493 1.24195 1.33139 1.83621 1.24122 0.80549 0.93016 0.70762 1.90589 1.60736 1.44298 1.46380 1.20717 0.96254 0.88204 0.99655 1.21864 1.02827 1.01031 0.93489 1.21635 1.02180 0.99403 0.90413 1.21486 0.95172 0.99491 0.98129 1.21583 0.95588 0.95308 0.89989 1.60562 1.35645 1.31458 1.04506 1.19203 0.93625 0.90233 0.88442 1.21586 1.45051 0.95744 0.95271 0.92185 1.25935 0.95386 0.95931 1.02271 1.70088 1.50121 1.10247 1.26787 0.85285 0.77983 0.78776 0.78245 1.18974 1.20202 1.20026 1.21895 1.00534 1.00699 0.93385 1.21480 0.91689 1.02012 0.97678 0.90575 0.91768 0.88420 0.92723 0.91008 0.91513 0.88902 0.90523 0.89371 0.88730 0.93579 0.94014 0.95323 0.85079 0.98094 1.02224 0.92542 0.91969 0.90913 0.88675 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 10.29 71.98 0.74 -1.29 16 2 C 0.05 1.09 6.19 71.98 0.45 1.53 16 3 O -0.36 -8.84 10.02 -51.34 -0.51 -9.36 16 4 C 0.47 12.96 5.04 71.23 0.36 13.32 16 5 O -0.53 -17.63 13.41 21.94 0.29 -17.34 16 6 C -0.05 -1.07 0.72 -52.93 -0.04 -1.10 16 7 C -0.14 -2.03 8.41 71.99 0.61 -1.42 16 8 C -0.10 -2.43 4.67 30.59 0.14 -2.29 16 9 C -0.10 -3.67 5.21 30.59 0.16 -3.51 16 10 C 0.09 3.22 2.49 44.92 0.11 3.34 16 11 N -0.69 -32.29 6.30 -495.59 -3.12 -35.41 16 12 C 0.21 11.94 5.24 85.56 0.45 12.39 16 13 C -0.54 -32.05 9.32 25.60 0.24 -31.81 16 14 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 15 C 0.00 0.18 5.46 84.66 0.46 0.64 16 16 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 17 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 C -0.13 -4.06 4.90 30.60 0.15 -3.91 16 22 C -0.09 -2.16 4.37 30.59 0.13 -2.03 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.07 1.41 8.13 -2.39 -0.02 1.40 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 31 H 0.09 1.95 8.11 -2.39 -0.02 1.93 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.81 7.45 -2.39 -0.02 1.80 16 34 H 0.04 1.58 7.22 -2.39 -0.02 1.57 16 35 H 0.03 1.12 7.80 -2.39 -0.02 1.10 16 36 H 0.33 14.97 8.34 -89.69 -0.75 14.23 16 37 H 0.00 0.06 7.43 -2.39 -0.02 0.04 16 38 H -0.04 -2.38 8.06 -2.39 -0.02 -2.40 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 41 H 0.07 2.65 5.52 -2.39 -0.01 2.64 16 42 H 0.09 1.90 8.14 -2.38 -0.02 1.89 16 43 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -70.88 339.82 3.15 -67.73 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.22 Total: 20.07 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 3.96 Total: -16.13 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -2.84 Total: -92.45 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.22 Total: -26.70 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.88 3.15 -67.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355128753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.894 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds