Wall clock time and date at job start Mon Mar 30 2020 01:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47213 * 2 1 4 4 C 1.42899 * 113.99936 * 182.39806 * 3 2 1 5 5 H 1.08994 * 109.47222 * 18.23630 * 4 3 2 6 6 C 1.53001 * 109.47077 * 258.23147 * 4 3 2 7 7 C 1.53000 * 109.46955 * 65.26449 * 6 4 3 8 8 N 1.46501 * 109.46748 * 179.58155 * 7 6 4 9 9 C 1.34784 * 119.99883 * 180.02562 * 8 7 6 10 10 O 1.21686 * 119.99480 * 359.97438 * 9 8 7 11 11 C 1.46369 * 120.00103 * 180.02562 * 9 8 7 12 12 H 1.07997 * 120.00104 * 5.74516 * 11 9 8 13 13 C 1.40048 * 120.00011 * 185.74935 * 11 9 8 14 14 N 1.30672 * 120.00156 * 354.17463 * 13 11 9 15 15 Si 1.86798 * 120.00016 * 174.17379 * 13 11 9 16 16 H 1.48494 * 109.47258 * 94.98736 * 15 13 11 17 17 H 1.48501 * 109.47042 * 214.98762 * 15 13 11 18 18 H 1.48499 * 109.47220 * 334.98522 * 15 13 11 19 19 C 1.53007 * 109.46582 * 138.23554 * 4 3 2 20 20 C 1.54259 * 110.03221 * 54.72036 * 19 4 3 21 21 C 1.54893 * 104.19581 * 217.10131 * 20 19 4 22 22 C 1.54896 * 102.74625 * 37.94607 * 21 20 19 23 23 C 1.53877 * 110.03038 * 297.55069 * 19 4 3 24 24 H 1.09004 * 109.46950 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47247 * 299.99745 * 1 2 3 26 26 H 1.08998 * 109.47286 * 60.00164 * 1 2 3 27 27 H 1.08998 * 109.47207 * 239.99707 * 2 1 3 28 28 H 1.09005 * 109.47146 * 120.00199 * 2 1 3 29 29 H 1.09000 * 109.47401 * 305.25922 * 6 4 3 30 30 H 1.09002 * 109.46992 * 185.26514 * 6 4 3 31 31 H 1.08994 * 109.46825 * 299.57796 * 7 6 4 32 32 H 1.08997 * 109.47109 * 59.58309 * 7 6 4 33 33 H 0.96998 * 120.00573 * 359.97438 * 8 7 6 34 34 H 0.96994 * 120.00503 * 180.02562 * 14 13 11 35 35 H 1.08999 * 110.01213 * 176.16423 * 19 4 3 36 36 H 1.08999 * 110.49315 * 335.78059 * 20 19 4 37 37 H 1.08996 * 110.48752 * 98.42787 * 20 19 4 38 38 H 1.08996 * 110.75779 * 279.63525 * 21 20 19 39 39 H 1.08998 * 110.75480 * 156.25281 * 21 20 19 40 40 H 1.08991 * 110.48833 * 203.37903 * 22 21 20 41 41 H 1.08994 * 110.59774 * 80.78788 * 22 21 20 42 42 H 1.08995 * 110.03350 * 238.57047 * 23 19 4 43 43 H 1.09004 * 110.03376 * 359.95776 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4298 1.4605 -0.0546 5 1 3.8558 0.5209 -0.4064 6 6 3.9704 1.7744 1.3418 7 6 3.6996 0.5899 2.2717 8 7 4.2261 0.8866 3.6062 9 6 4.1014 -0.0192 4.5965 10 8 3.5510 -1.0831 4.3821 11 6 4.6269 0.2773 5.9301 12 1 5.0309 1.2553 6.1461 13 6 4.6060 -0.7072 6.9258 14 7 4.0157 -1.8512 6.7013 15 14 5.4219 -0.3851 8.5750 16 1 4.4083 0.1107 9.5403 17 1 6.0181 -1.6452 9.0869 18 1 6.4881 0.6351 8.4090 19 6 3.8152 2.5868 -1.0158 20 6 3.1114 3.8964 -0.6046 21 6 2.7550 4.5749 -1.9506 22 6 2.3489 3.3746 -2.8415 23 6 3.3305 2.2549 -2.4381 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.4748 2.6634 1.7320 30 1 5.0441 1.9530 1.2841 31 1 2.6255 0.4162 2.3352 32 1 4.1892 -0.3006 1.8776 33 1 4.6652 1.7344 3.7771 34 1 4.0009 -2.5330 7.3911 35 1 4.8963 2.7261 -1.0129 36 1 2.2075 3.6812 -0.0349 37 1 3.7867 4.5272 -0.0266 38 1 3.6222 5.0882 -2.3660 39 1 1.9196 5.2639 -1.8266 40 1 2.4678 3.6245 -3.8957 41 1 1.3217 3.0741 -2.6350 42 1 4.1761 2.2342 -3.1254 43 1 2.8213 1.2912 -2.4436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356906914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:12 Heat of formation + Delta-G solvation = -119.093768 kcal Electronic energy + Delta-G solvation = -21209.455292 eV Core-core repulsion = 18060.275841 eV Total energy + Delta-G solvation = -3149.179452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.47827 -37.28614 -36.78295 -34.01632 -32.47763 -31.85196 -30.14749 -28.87368 -28.46595 -26.20406 -23.90278 -22.62433 -21.43837 -20.47908 -19.83353 -19.37802 -17.13370 -16.59787 -16.19277 -15.35990 -15.32433 -15.11533 -14.22453 -14.16629 -13.91107 -13.76710 -13.34899 -13.03763 -12.79790 -12.35302 -12.18565 -11.95861 -11.68423 -11.53446 -11.18793 -11.14772 -11.13831 -11.01919 -10.99315 -10.77551 -10.60296 -10.57023 -10.46337 -10.29425 -10.25992 -10.18367 -9.26310 -8.81891 -7.57159 -7.44065 -6.16403 -4.60368 3.15340 3.22424 3.26521 3.79250 4.12800 4.46687 4.61769 4.62640 4.67013 4.89532 5.13490 5.16456 5.24045 5.37147 5.43318 5.45017 5.52057 5.55606 5.60605 5.63202 5.70625 5.74768 5.81545 5.84129 5.87878 5.88059 6.00312 6.07342 6.10389 6.11904 6.22694 6.26354 6.29832 6.45871 6.61349 6.67935 7.43214 7.46338 7.97866 8.15493 8.37228 9.05532 9.58810 10.63333 10.82302 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.003753 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.993652 B = 7459.435130 C = 8085.163381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.374 6.374 4 C 0.101 3.899 5 H 0.061 0.939 6 C -0.146 4.146 7 C 0.133 3.867 8 N -0.768 5.768 9 C 0.554 3.446 10 O -0.583 6.583 11 C -0.547 4.547 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.093 4.093 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.116 4.116 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.379 0.621 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 9.468 -16.834 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.293 6.293 4 C 0.043 3.957 5 H 0.079 0.921 6 C -0.184 4.184 7 C 0.007 3.993 8 N -0.423 5.423 9 C 0.358 3.642 10 O -0.466 6.466 11 C -0.584 4.584 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.732 3.268 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.111 4.111 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.153 4.153 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.210 0.790 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.422 8.625 -16.925 19.150 hybrid contribution 0.850 0.262 0.901 1.267 sum -1.572 8.887 -16.024 18.391 Atomic orbital electron populations 1.21704 0.94095 1.02048 1.02671 1.22656 0.95414 0.84110 1.00462 1.87873 1.20525 1.26034 1.94888 1.22026 0.81721 0.97757 0.94240 0.92137 1.22283 1.01076 0.99998 0.95092 1.20926 0.98566 0.95388 0.84372 1.46131 1.65367 1.21263 1.09585 1.18218 0.79286 0.82544 0.84148 1.90585 1.47210 1.25409 1.83400 1.20893 1.43250 0.99631 0.94639 0.91455 1.25706 0.93563 0.94411 0.99512 1.70028 1.32368 1.04489 1.32878 0.86375 0.79894 0.78502 0.82077 1.19844 1.20429 1.18868 1.21992 0.99828 0.95098 0.94191 1.22346 1.01037 0.94868 0.97002 1.22480 1.00501 0.97224 0.95991 1.22287 0.99583 0.95248 0.98576 1.22115 0.98556 0.99119 0.95536 0.91357 0.91782 0.92416 0.93991 0.92155 0.90752 0.91083 0.92997 0.94107 0.78956 0.92182 0.90248 0.90143 0.92085 0.92034 0.91943 0.92442 0.91538 0.92361 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.16 0.38 -1.37 16 2 C 0.05 0.67 6.06 37.16 0.23 0.90 16 3 O -0.37 -5.23 8.19 -35.23 -0.29 -5.52 16 4 C 0.10 1.30 1.76 -26.73 -0.05 1.26 16 5 H 0.06 0.77 7.65 -51.93 -0.40 0.38 16 6 C -0.15 -2.15 4.78 -26.73 -0.13 -2.28 16 7 C 0.13 2.63 4.85 -4.04 -0.02 2.61 16 8 N -0.77 -17.79 5.55 -61.72 -0.34 -18.13 16 9 C 0.55 16.23 7.74 -12.99 -0.10 16.13 16 10 O -0.58 -19.33 15.04 5.20 0.08 -19.26 16 11 C -0.55 -15.80 9.54 -35.63 -0.34 -16.14 16 12 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 13 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 14 N -0.77 -23.44 11.85 55.55 0.66 -22.78 16 15 Si 0.91 20.40 29.56 -169.99 -5.03 15.37 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 19 C -0.09 -1.00 2.80 -89.50 -0.25 -1.25 16 20 C -0.12 -1.23 5.40 -25.07 -0.14 -1.37 16 21 C -0.12 -1.16 6.91 -24.73 -0.17 -1.33 16 22 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 23 C -0.12 -1.14 6.25 -25.61 -0.16 -1.30 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 28 H 0.06 0.95 5.97 -51.93 -0.31 0.64 16 29 H 0.07 1.10 7.59 -51.93 -0.39 0.70 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 1.12 6.23 -51.93 -0.32 0.79 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.38 7.70 8.45 -40.82 -0.35 7.35 16 34 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.01 7.02 -51.93 -0.36 0.64 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -34.22 342.52 -8.33 -42.56 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.56 Total: 5.64 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.01 Total: -3.05 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.32 Total: -40.91 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.21 Total: -24.77 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.22 -8.33 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356906914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.538 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds