Wall clock time and date at job start Mon Mar 30 2020 01:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42906 * 109.46952 * 2 1 4 4 C 1.42896 * 113.99930 * 174.99604 * 3 2 1 5 5 H 1.09003 * 109.47265 * 344.47540 * 4 3 2 6 6 C 1.53001 * 109.46676 * 104.46853 * 4 3 2 7 7 C 1.52998 * 109.47157 * 296.54171 * 6 4 3 8 8 N 1.46502 * 109.47011 * 184.94919 * 7 6 4 9 9 C 1.34784 * 119.99801 * 180.02562 * 8 7 6 10 10 O 1.21687 * 119.99916 * 0.02562 * 9 8 7 11 11 C 1.46375 * 119.99750 * 179.97438 * 9 8 7 12 12 H 1.07999 * 120.00129 * 0.02562 * 11 9 8 13 13 C 1.40049 * 119.99972 * 180.02562 * 11 9 8 14 14 N 1.30669 * 119.99950 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 120.00059 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47074 * 120.00160 * 15 13 11 18 18 H 1.48502 * 109.47137 * 239.99827 * 15 13 11 19 19 C 1.52991 * 109.47544 * 224.46855 * 4 3 2 20 20 C 1.54264 * 110.03726 * 172.48399 * 19 4 3 21 21 C 1.54891 * 104.20091 * 217.10791 * 20 19 4 22 22 C 1.54888 * 102.74662 * 37.93927 * 21 20 19 23 23 C 1.53879 * 110.03268 * 55.31717 * 19 4 3 24 24 H 1.08998 * 109.47131 * 60.00093 * 1 2 3 25 25 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47076 * 300.00181 * 1 2 3 27 27 H 1.08998 * 109.47131 * 119.99907 * 2 1 3 28 28 H 1.08991 * 109.47183 * 240.00289 * 2 1 3 29 29 H 1.08996 * 109.47510 * 56.54393 * 6 4 3 30 30 H 1.09004 * 109.47009 * 176.54731 * 6 4 3 31 31 H 1.08993 * 109.47772 * 304.95172 * 7 6 4 32 32 H 1.08998 * 109.46982 * 64.95404 * 7 6 4 33 33 H 0.97000 * 120.00393 * 0.02562 * 8 7 6 34 34 H 0.97004 * 120.00148 * 180.02562 * 14 13 11 35 35 H 1.09007 * 110.01831 * 293.92872 * 19 4 3 36 36 H 1.09001 * 110.48395 * 335.78666 * 20 19 4 37 37 H 1.09004 * 110.48903 * 98.42668 * 20 19 4 38 38 H 1.09002 * 110.74887 * 279.62601 * 21 20 19 39 39 H 1.08991 * 110.91894 * 156.32978 * 21 20 19 40 40 H 1.09002 * 110.48383 * 203.38456 * 22 21 20 41 41 H 1.09000 * 110.60104 * 80.79303 * 22 21 20 42 42 H 1.08996 * 110.03149 * 238.57063 * 23 19 4 43 43 H 1.08998 * 110.03027 * 0.02562 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4262 1.4619 0.1139 5 1 3.8414 0.5124 0.4520 6 6 4.0198 1.8212 -1.2498 7 6 3.7501 0.6854 -2.2387 8 7 4.4188 0.9753 -3.5095 9 6 4.3194 0.1081 -4.5365 10 8 3.6738 -0.9154 -4.4083 11 6 4.9871 0.3981 -5.8065 12 1 5.5597 1.3067 -5.9204 13 6 4.8834 -0.5027 -6.8738 14 7 4.1902 -1.6017 -6.7361 15 14 5.7361 -0.1330 -8.4941 16 1 6.4512 1.1645 -8.3925 17 1 6.7100 -1.2120 -8.7985 18 1 4.7253 -0.0580 -9.5795 19 6 3.7701 2.5577 1.1246 20 6 5.2882 2.5661 1.3990 21 6 5.3994 2.8905 2.9094 22 6 4.2057 2.1114 3.5152 23 6 3.0818 2.2686 2.4701 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5137 -0.8899 29 1 3.5594 2.7388 -1.6160 30 1 5.0952 1.9687 -1.1504 31 1 4.1338 -0.2499 -1.8314 32 1 2.6766 0.5958 -2.4052 33 1 4.9331 1.7914 -3.6119 34 1 4.1186 -2.2259 -7.4753 35 1 3.4533 3.5289 0.7442 36 1 5.7197 1.5880 1.1861 37 1 5.7788 3.3379 0.8059 38 1 5.2904 3.9610 3.0836 39 1 6.3434 2.5286 3.3167 40 1 3.9063 2.5514 4.4664 41 1 4.4607 1.0597 3.6457 42 1 2.4318 3.0998 2.7431 43 1 2.5032 1.3474 2.4031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356906916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:14 Heat of formation + Delta-G solvation = -120.695930 kcal Electronic energy + Delta-G solvation = -21078.355252 eV Core-core repulsion = 17929.106326 eV Total energy + Delta-G solvation = -3149.248926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.44863 -37.32835 -36.92581 -34.02552 -32.47636 -31.85568 -30.19975 -28.82684 -28.52686 -26.20497 -23.92343 -22.57911 -21.39205 -20.60826 -19.83835 -19.43861 -17.12150 -16.87148 -15.99736 -15.56773 -15.32386 -15.05256 -14.24235 -14.20590 -13.92298 -13.80821 -13.44026 -13.14002 -12.56204 -12.37585 -12.26463 -11.90432 -11.76659 -11.36662 -11.23903 -11.19875 -11.16721 -11.11427 -10.99849 -10.85194 -10.75708 -10.64242 -10.46357 -10.36369 -10.29321 -10.16122 -9.28048 -8.83076 -7.56780 -7.43867 -6.15447 -4.60564 3.14700 3.22651 3.27343 3.73987 4.12843 4.45156 4.51278 4.62718 4.66469 4.85385 5.08495 5.14311 5.26929 5.33752 5.37124 5.41387 5.50751 5.52094 5.52988 5.56582 5.61611 5.72606 5.74975 5.80864 5.82459 5.91409 5.93988 6.03320 6.08569 6.11098 6.17649 6.21762 6.23672 6.34307 6.61116 6.68626 7.41911 7.46402 7.98052 8.15816 8.37398 9.05762 9.59194 10.63827 10.82871 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.003838 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.267502 B = 7293.786403 C = 8177.103813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.379 6.379 4 C 0.102 3.898 5 H 0.062 0.938 6 C -0.146 4.146 7 C 0.135 3.865 8 N -0.768 5.768 9 C 0.554 3.446 10 O -0.582 6.582 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.092 4.092 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.114 4.114 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.379 0.621 34 H 0.267 0.733 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 7.811 17.840 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.298 6.298 4 C 0.044 3.956 5 H 0.080 0.920 6 C -0.184 4.184 7 C 0.009 3.991 8 N -0.424 5.424 9 C 0.357 3.643 10 O -0.465 6.465 11 C -0.583 4.583 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.732 3.268 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.111 4.111 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.165 4.165 23 C -0.152 4.152 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.210 0.790 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.128 7.018 17.842 19.206 hybrid contribution 0.808 0.324 -0.885 1.241 sum -0.320 7.342 16.956 18.480 Atomic orbital electron populations 1.21720 0.94074 1.02075 1.02738 1.22633 0.95414 0.83977 1.00446 1.87876 1.21118 1.26304 1.94506 1.22147 0.81460 0.97914 0.94110 0.92014 1.22278 1.01000 1.00122 0.94995 1.20873 0.97409 0.95615 0.85164 1.46136 1.57558 1.25923 1.12763 1.18230 0.80924 0.82104 0.82996 1.90587 1.45360 1.27446 1.83154 1.20935 1.33926 1.07384 0.96063 0.91430 1.25713 0.93825 0.94062 0.99649 1.70037 1.31002 1.07750 1.30992 0.86326 0.79483 0.79157 0.81826 1.18793 1.20196 1.20177 1.21950 0.95129 0.99203 0.94829 1.22426 0.95088 1.02068 0.96072 1.22484 0.98156 1.00099 0.95460 1.22401 0.95649 1.00230 0.98205 1.22094 0.97422 1.01965 0.93672 0.91733 0.91313 0.92378 0.93903 0.92271 0.90988 0.90815 0.94138 0.93087 0.78969 0.92232 0.90383 0.91259 0.91315 0.91615 0.91705 0.92009 0.91849 0.91946 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.38 16 2 C 0.05 0.70 6.10 37.16 0.23 0.93 16 3 O -0.38 -5.49 8.85 -35.23 -0.31 -5.81 16 4 C 0.10 1.34 1.59 -26.74 -0.04 1.30 16 5 H 0.06 0.81 7.47 -51.93 -0.39 0.42 16 6 C -0.15 -2.17 4.94 -26.73 -0.13 -2.30 16 7 C 0.13 2.69 4.65 -4.04 -0.02 2.67 16 8 N -0.77 -17.86 5.55 -61.72 -0.34 -18.20 16 9 C 0.55 16.25 7.75 -12.98 -0.10 16.15 16 10 O -0.58 -19.37 15.02 5.20 0.08 -19.29 16 11 C -0.55 -15.78 9.54 -35.63 -0.34 -16.12 16 12 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 13 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 14 N -0.77 -23.48 11.83 55.55 0.66 -22.82 16 15 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 16 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 C -0.09 -1.01 2.70 -89.51 -0.24 -1.25 16 20 C -0.12 -1.15 5.46 -25.07 -0.14 -1.29 16 21 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 22 C -0.13 -1.10 6.83 -25.07 -0.17 -1.27 16 23 C -0.11 -1.14 6.18 -25.61 -0.16 -1.30 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.51 8.03 -51.93 -0.42 0.09 16 28 H 0.06 0.94 6.40 -51.93 -0.33 0.60 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.00 7.40 -51.93 -0.38 0.62 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.12 6.84 -51.93 -0.35 0.76 16 33 H 0.38 7.71 8.45 -40.82 -0.35 7.36 16 34 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.70 7.76 -51.93 -0.40 0.29 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -34.49 344.02 -8.38 -42.87 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.62 Total: 5.36 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.00 Total: -2.71 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.31 Total: -41.02 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.23 Total: -25.10 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.49 -8.38 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356906916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.824 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds