Wall clock time and date at job start Mon Mar 30 2020 01:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42906 * 109.46952 * 2 1 4 4 C 1.42896 * 113.99930 * 174.99604 * 3 2 1 5 5 H 1.09003 * 109.47265 * 344.47540 * 4 3 2 6 6 C 1.53001 * 109.46676 * 104.46853 * 4 3 2 7 7 C 1.52998 * 109.47157 * 296.54171 * 6 4 3 8 8 N 1.46502 * 109.47011 * 184.94919 * 7 6 4 9 9 C 1.34784 * 119.99801 * 180.02562 * 8 7 6 10 10 O 1.21687 * 119.99916 * 0.02562 * 9 8 7 11 11 C 1.46375 * 119.99750 * 179.97438 * 9 8 7 12 12 H 1.07999 * 120.00129 * 0.02562 * 11 9 8 13 13 C 1.40049 * 119.99972 * 180.02562 * 11 9 8 14 14 N 1.30669 * 119.99950 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 120.00059 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47074 * 120.00160 * 15 13 11 18 18 H 1.48502 * 109.47137 * 239.99827 * 15 13 11 19 19 C 1.52991 * 109.47544 * 224.46855 * 4 3 2 20 20 C 1.54264 * 110.03726 * 172.48399 * 19 4 3 21 21 C 1.54891 * 104.20091 * 217.10791 * 20 19 4 22 22 C 1.54888 * 102.74662 * 37.93927 * 21 20 19 23 23 C 1.53879 * 110.03268 * 55.31717 * 19 4 3 24 24 H 1.08998 * 109.47131 * 60.00093 * 1 2 3 25 25 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47076 * 300.00181 * 1 2 3 27 27 H 1.08998 * 109.47131 * 119.99907 * 2 1 3 28 28 H 1.08991 * 109.47183 * 240.00289 * 2 1 3 29 29 H 1.08996 * 109.47510 * 56.54393 * 6 4 3 30 30 H 1.09004 * 109.47009 * 176.54731 * 6 4 3 31 31 H 1.08993 * 109.47772 * 304.95172 * 7 6 4 32 32 H 1.08998 * 109.46982 * 64.95404 * 7 6 4 33 33 H 0.97000 * 120.00393 * 0.02562 * 8 7 6 34 34 H 0.97004 * 120.00148 * 180.02562 * 14 13 11 35 35 H 1.09007 * 110.01831 * 293.92872 * 19 4 3 36 36 H 1.09001 * 110.48395 * 335.78666 * 20 19 4 37 37 H 1.09004 * 110.48903 * 98.42668 * 20 19 4 38 38 H 1.09002 * 110.74887 * 279.62601 * 21 20 19 39 39 H 1.08991 * 110.91894 * 156.32978 * 21 20 19 40 40 H 1.09002 * 110.48383 * 203.38456 * 22 21 20 41 41 H 1.09000 * 110.60104 * 80.79303 * 22 21 20 42 42 H 1.08996 * 110.03149 * 238.57063 * 23 19 4 43 43 H 1.08998 * 110.03027 * 0.02562 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4262 1.4619 0.1139 5 1 3.8414 0.5124 0.4520 6 6 4.0198 1.8212 -1.2498 7 6 3.7501 0.6854 -2.2387 8 7 4.4188 0.9753 -3.5095 9 6 4.3194 0.1081 -4.5365 10 8 3.6738 -0.9154 -4.4083 11 6 4.9871 0.3981 -5.8065 12 1 5.5597 1.3067 -5.9204 13 6 4.8834 -0.5027 -6.8738 14 7 4.1902 -1.6017 -6.7361 15 14 5.7361 -0.1330 -8.4941 16 1 6.4512 1.1645 -8.3925 17 1 6.7100 -1.2120 -8.7985 18 1 4.7253 -0.0580 -9.5795 19 6 3.7701 2.5577 1.1246 20 6 5.2882 2.5661 1.3990 21 6 5.3994 2.8905 2.9094 22 6 4.2057 2.1114 3.5152 23 6 3.0818 2.2686 2.4701 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5137 -0.8899 29 1 3.5594 2.7388 -1.6160 30 1 5.0952 1.9687 -1.1504 31 1 4.1338 -0.2499 -1.8314 32 1 2.6766 0.5958 -2.4052 33 1 4.9331 1.7914 -3.6119 34 1 4.1186 -2.2259 -7.4753 35 1 3.4533 3.5289 0.7442 36 1 5.7197 1.5880 1.1861 37 1 5.7788 3.3379 0.8059 38 1 5.2904 3.9610 3.0836 39 1 6.3434 2.5286 3.3167 40 1 3.9063 2.5514 4.4664 41 1 4.4607 1.0597 3.6457 42 1 2.4318 3.0998 2.7431 43 1 2.5032 1.3474 2.4031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356906916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:14 Heat of formation + Delta-G solvation = -143.878410 kcal Electronic energy + Delta-G solvation = -21079.360520 eV Core-core repulsion = 17929.106326 eV Total energy + Delta-G solvation = -3150.254194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50548 -39.29861 -37.98772 -35.79276 -34.57163 -33.28585 -31.44374 -29.93016 -29.47136 -28.16904 -25.27641 -23.70666 -22.65812 -21.75765 -21.39213 -20.49359 -19.19085 -17.98269 -17.50375 -17.09338 -16.41983 -16.17738 -15.86257 -15.79175 -15.71394 -14.90924 -14.41343 -14.30245 -14.18889 -14.02960 -13.44994 -13.20814 -13.06765 -12.86737 -12.81389 -12.63767 -12.46243 -12.36618 -11.98683 -11.95151 -11.90636 -11.87373 -11.72992 -11.62466 -11.44909 -11.22927 -10.95895 -10.45007 -9.86580 -9.51491 -8.30612 -6.87617 1.39820 1.40145 1.58508 2.24264 2.45458 2.69405 3.06444 3.59594 3.66771 3.72076 3.84470 4.04743 4.09550 4.15171 4.28008 4.30019 4.38379 4.45891 4.56971 4.60300 4.64011 4.72379 4.79414 4.80697 4.89288 4.93576 5.01686 5.07889 5.10527 5.12984 5.15174 5.24557 5.29816 5.30689 5.39573 5.49751 5.53203 5.85952 6.21588 6.25383 6.31504 6.84989 7.53526 8.47222 8.65847 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.003838 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.267502 B = 7293.786403 C = 8177.103813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.390 6.390 4 C 0.102 3.898 5 H 0.061 0.939 6 C -0.131 4.131 7 C 0.140 3.860 8 N -0.756 5.756 9 C 0.534 3.466 10 O -0.634 6.634 11 C -0.574 4.574 12 H 0.089 0.911 13 C 0.026 3.974 14 N -0.823 5.823 15 Si 1.002 2.998 16 H -0.246 1.246 17 H -0.267 1.267 18 H -0.268 1.268 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.113 4.113 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.396 0.604 34 H 0.275 0.725 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 9.564 18.267 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.310 6.310 4 C 0.044 3.956 5 H 0.079 0.921 6 C -0.169 4.169 7 C 0.016 3.984 8 N -0.411 5.411 9 C 0.338 3.662 10 O -0.522 6.522 11 C -0.610 4.610 12 H 0.107 0.893 13 C -0.189 4.189 14 N -0.452 5.452 15 Si 0.821 3.179 16 H -0.169 1.169 17 H -0.192 1.192 18 H -0.193 1.193 19 C -0.107 4.107 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.163 4.163 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.251 8.827 18.314 20.332 hybrid contribution 0.347 -0.234 -0.965 1.052 sum 0.597 8.593 17.349 19.370 Atomic orbital electron populations 1.21721 0.92735 1.03049 1.02740 1.22674 0.96600 0.83637 0.99743 1.87867 1.21879 1.26710 1.94519 1.22232 0.80838 0.98933 0.93583 0.92079 1.22203 1.02475 0.97774 0.94470 1.20914 0.95430 0.97249 0.84842 1.45851 1.57062 1.25447 1.12737 1.18698 0.80681 0.82193 0.84626 1.90540 1.47557 1.29768 1.84336 1.21481 1.34431 1.08592 0.96515 0.89312 1.27034 0.94122 0.93265 1.04445 1.70204 1.32699 1.09302 1.33025 0.84921 0.78136 0.79760 0.75129 1.16883 1.19229 1.19339 1.21923 0.96314 0.97895 0.94522 1.22450 0.93881 1.02081 0.97352 1.22481 0.98477 1.00589 0.94251 1.22399 0.95146 1.00434 0.98285 1.22082 0.97857 1.01612 0.93560 0.93239 0.89928 0.90747 0.92042 0.95473 0.90652 0.88857 0.95684 0.95578 0.77057 0.91551 0.90534 0.91761 0.90658 0.90831 0.90751 0.90782 0.91927 0.91574 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 10.28 71.99 0.74 -2.72 16 2 C 0.05 1.39 6.10 71.99 0.44 1.83 16 3 O -0.39 -11.36 8.85 -148.98 -1.32 -12.68 16 4 C 0.10 2.65 1.59 30.59 0.05 2.70 16 5 H 0.06 1.59 7.47 -2.39 -0.02 1.57 16 6 C -0.13 -3.85 4.94 30.59 0.15 -3.70 16 7 C 0.14 5.80 4.65 86.38 0.40 6.21 16 8 N -0.76 -35.75 5.55 -467.41 -2.59 -38.35 16 9 C 0.53 32.26 7.75 86.36 0.67 32.93 16 10 O -0.63 -44.19 15.02 -4.31 -0.06 -44.25 16 11 C -0.57 -33.35 9.54 24.83 0.24 -33.12 16 12 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 13 C 0.03 1.49 5.50 85.31 0.47 1.96 16 14 N -0.82 -51.44 11.83 21.84 0.26 -51.18 16 15 Si 1.00 41.50 29.56 68.60 2.03 43.53 16 16 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 17 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 19 C -0.09 -1.79 2.70 -10.07 -0.03 -1.81 16 20 C -0.12 -2.07 5.46 31.67 0.17 -1.89 16 21 C -0.12 -1.71 6.91 31.89 0.22 -1.49 16 22 C -0.13 -1.87 6.83 31.67 0.22 -1.66 16 23 C -0.11 -2.09 6.18 31.32 0.19 -1.89 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.46 8.03 -2.39 -0.02 1.44 16 28 H 0.03 0.92 6.40 -2.39 -0.02 0.90 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.09 2.38 7.40 -2.38 -0.02 2.37 16 31 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.03 1.21 6.84 -2.39 -0.02 1.19 16 33 H 0.40 15.90 8.45 -92.71 -0.78 15.12 16 34 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 35 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.06 1.18 7.76 -2.39 -0.02 1.16 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.14 7.26 -2.39 -0.02 1.13 16 Total: -1.00 -77.16 344.02 2.43 -74.73 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.19 Total: 30.88 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 3.93 Total: -2.67 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -2.34 Total: -89.53 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -1.38 Total: -56.94 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -77.16 2.43 -74.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356906916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.152 kcal (2) G-P(sol) polarization free energy of solvation -77.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds